Cell Biochemistry and Biophysics

, Volume 55, Issue 2, pp 107–116

The Genetic Code—More Than Just a Table

Original Research

DOI: 10.1007/s12013-009-9060-9

Cite this article as:
Berleant, D., White, M., Pierce, E. et al. Cell Biochem Biophys (2009) 55: 107. doi:10.1007/s12013-009-9060-9

Abstract

The standard codon table is a primary tool for basic understanding of molecular biology. In the minds of many, the table’s orderly arrangement of bases and amino acids is synonymous with the true genetic code, i.e., the biological coding principle itself. However, developments in the field reveal a much more complex and interesting picture. In this article, we review the traditional codon table and its limitations in light of the true complexity of the genetic code. We suggest the codon table be brought up to date and, as a step, we present a novel superposition of the BLOSUM62 matrix and an allowed point mutation matrix. This superposition depicts an important aspect of the true genetic code—its ability to tolerate mutations and mistranslations.

Keywords

Genetic code Codon table Biological pedagogy Code optimization Point mutation BLOSUM62 PAM250 

Supplementary material

12013_2009_9060_MOESM1_ESM.pdf (2 mb)
(PDF 2056 kb)

Copyright information

© Humana Press Inc. 2009

Authors and Affiliations

  • D. Berleant
    • 1
  • M. White
    • 2
  • E. Pierce
    • 1
  • E. Tudoreanu
    • 1
  • A. Boeszoermenyi
    • 3
  • Y. Shtridelman
    • 4
  • J. C. Macosko
    • 4
  1. 1.Department of Information ScienceUniversity of Arkansas at Little RockLittle RockUSA
  2. 2.Rafiki Inc.BloomingtonUSA
  3. 3.Karl-Franzens-Universität GrazGrazAustria
  4. 4.Department of PhysicsWake Forest UniversityWinston-SalemUSA