Abstract
Extraction of genomic DNA from various types of samples is often challenging for commercial silica spin column. In this study, we proposed graphite oxide (GO)/cellulose composite as an alternative material for genomic DNA extraction. The purity of DNA and extraction efficiency were compared to that of commercial silica product. In this study, the total weight % of GO was fixed at 4.15% in GO/Cellulose composite. Chewed gum, nail clip, cigarette bud paper, animal tissue and hair sample were used as various genomic DNA sources for extraction experiments. Among all types of samples, the extraction efficiencies were 4 to 12 times higher than that of commercial silica spin column. The absorbance ratio of 260 nm to 280 nm (A260/A280) of all samples ranged between 1.6 and 2.0. The results demonstrated that GO/Cellulose composites might serve as an innovative solid support material for genomic DNA extraction.
Similar content being viewed by others
References
L. Le Marchand, A. Lum-Jones, B. Saltzman, V. Visaya, A.M.Y. Nomura, and L.N. Kolonel, Cancer Epidemiol. Biomark. Prev. 10, 701 (2001).
T.V.O. Hansen, M.K. Simonsen, F.C. Nielsen, and Y.A. Hundrup, Cancer Epidemiol. Biomark. Prev. 16, 2072 (2007).
S. Ghatak, R.B. Muthukumaran, and S.K. Nachimuthu, J. Biomol. Tech. 24, 224 (2013).
L. Truong, H.L. Park, S.S. Chang, A. Ziogas, S.L. Neuhausen, S.S. Wang, L. Bernstein, and H. Anton-Culver, Open J. Epidemiol. 05, 41 (2015).
J. Stray, A. Holt, M. Brevnov, L.M. Calandro, M.R. Furtado, and J.G. Shewale, Forensic Sci. Int. 2, 159 (2009).
S. Witt, J. Neumann, H. Zierdt, G. Gébel, and C. Röscheisen, Forensic Sci. Int. 6, 539 (2012).
A. Barbaro, P. Cormaci, and G. Falcone, Forensic Sci. Int. 3, e61 (2011).
V. Castella, N. Dimo-Simonin, C. Brandt-Casadevall, and P. Mangin, Forensic Sci. Int. 156, 70 (2006).
K. Anslinger, B. Bayer, B. Rolf, W. Keil, and W. Eisenmenger, J. Leg. Med. 7, 164 (2005).
M.T. Bourke, C.A. Scherczinger, C. Ladd, and H.C. Lee, J. Forensic Sci. 44, 1046 (1999).
M.R. Wilson, J.A. DiZinno, D. Polanskey, J. Replogle, and B. Budowle, Int. J. Legal Med. 108, 68 (1995).
Y. Watanabe, T. Takayama, K. Hirata, S. Yamada, A. Nagai, I. Nakamura, Y. Bunai, and I. Ohya, J. Leg. Med. (Tokyo, Japan) 5, S177 (2003).
S.C.Y. Ip, S.-w. Lin, and K.-m. Lai, Sci. Justice (2015).
S.A. Greenspoon, J.D. Ban, K. Sykes, E.J. Ballard, S.S. Edler, M. Baisden, and B.L. Covington, J. Forensic Sci. 49, 29 (2004).
C.A. Crouse, S. Yeung, S. Greenspoon, A. McGuckian, J. Sikorsky, J. Ban, and R. Mathies, Croat Med. J. 46, 563 (2005).
N. Franke, C. Augustin, and K. Püschel, Forensic Sci. Int. 1, 423 (2008).
D. Han, L. Yan, W. Chen, W. Li, and P.R. Bangal, Carbohydr. Polym. 83, 966 (2011).
L. Tang, H. Chang, Y. Liu, and J. Li, Adv. Funct. Mater. 22, 3083 (2012).
Z. Tang, H. Wu, J.R. Cort, G.W. Buchko, Y. Zhang, Y. Shao, I.A. Aksay, J. Liu, and Y. Lin, Small 6, 1205 (2010).
N. Dahotre and S. Seal, JOM-J. Min. Met. Mat. S 56, 35 (2004).
G.A. Akceoglu, O.L. Li, and N. Saito, Colloids and Surf. B (2015, in press).
D.C. Marcano, D.V. Kosynkin, J.M. Berlin, A. Sinitskii, Z. Sun, A. Slesarev, L.B. Alemany, W. Lu, and J.M. Tour, ACS Nano 4, 4806 (2010).
R. Boom, C.J. Sol, M.M. Salimans, C.L. Jansen, P.M. Wertheim-van Dillen, and J. van der Noordaa, J. Clin. Microbiol. 28, 495 (1990).
Thermo Scientific, T0-42 Technical Bulletin “Assessment of Nucleic Acid Purity” http://www.nanodrop.com/Library/T042-NanoDrop-Spectrophotometers-Nucleic-Acid-Purity-Ratios.pdf. Accessed 10 August 2015.
Qiagen, Kit Handbooks, “QIAamp DNA Investigator Handbook” https://www.qiagen.com/tr/resources/resourcedetail?id=f2c2cc99-7cdb-442c-bae6-64830af8faec&lang=en. Accessed 10 August 2015.
L.Y. Khriachtchev, Diamond Based Composites and Related Materials, ed. M. Prelas, A. Benedictus, L.S. Lin, G. Popovici, and P. Gielisse (Springer, 1997), p. 309.
A.V. Stanishevsky and L.Y. Khriachtchev, Diam. Relat. Mater. 5, 1355 (1996).
L.Y. Khriachtchev, R. Lappalainen, M. Hakovirta, and M. Räsänen, Diam. Relat. Mater. 6, 694 (1997).
A. Dimiev, D.V. Kosynkin, L.B. Alemany, P. Chaguine, and J.M. Tour, J. Am. Chem. Soc. 134, 2815 (2012).
S. Eigler, C. Dotzer, and A. Hirsch, Carbon 50, 3666 (2012).
C. Wittmann, Immobilisation of DNA on Chips, 1st ed. (Berlin: Springer, 2005), p. 4.
D. Nii, T. Hayashida, and K. Umemura, Colloids Surf. B 106, 234 (2013).
Y. Wang, Z. Li, J. Wang, J. Li, and Y. Lin, Trends Biotechnol. 29, 205 (2011).
H. Lei, L. Mi, X. Zhou, J. Chen, J. Hu, S. Guo, and Y. Zhang, Nanoscale 3, 3888 (2011).
Y. Shao, J. Wang, H. Wu, J. Liu, I.A. Aksay, and Y. Lin, Electroanalysis 22, 1027 (2010).
S. Goenka, V. Sant, and S. Sant, J. Control Release 173, 75 (2014).
T. Premkumar and K.E. Geckeler, Prog. Polym. Sci. 37, 515 (2012).
A.M. Pinto, I.C. Gonçalves, and F.D. Magalhães, Colloids Surf. B 111, 188 (2013).
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Akceoglu, G.A., Li, O.L. & Saito, N. Innovative Graphite Oxide-Cellulose Based Material Specific for Genomic DNA Extraction. JOM 67, 2557–2563 (2015). https://doi.org/10.1007/s11837-015-1610-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11837-015-1610-6