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Diversity of endophytic fungi of common yew (Taxus baccata L.) in Iran

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Abstract

To characterize the endophytic fungi of common yew, 125 fungal strains were isolated from 80 healthy twig and bark samples. Of them, 41 (32.8%) isolates were identified on the basis of morphological features and 84 (67.2%) isolates were sterile. Of the 41 morphotypes, 40 isolates belonged to 21 genera and 26 species, with an isolate as anamorphic Xylaria. Most of the identified endophytic fungi belonged to mycelia sterilia (67.2%) and Ascomycota (32%) and the others belonged to Zygomycota (0.8%). Cladosporium and Alternaria were the dominant genera. Most of the identified species are new endophytes for common yew and Pseudodictyosporium elegans, Cladosporium basi-inflatum, C. perangustum, C. subtilissimum, Geniculosporium serpens, Phoma pratorum, Paraphoma fimeti, Phomopsis archeri, Sclerostagonospora cycadis, and Seimatosporium cf. pezizoides are reported as new taxa for the mycoflora of Iran. ITS rDNA phylogeny of 26 selected isolates revealed four clades, 1, 2, 3, and 4, corresponding to Sordariomycetes, Dothideomycetes, Eurotiomycetes, and Dothideomycetes, respectively. Clade 1 included four groups, A, B, C, and D, representing, respectively, the Xylariales, Trichosphaeriales, Hypocreales, and Diaporthales identified. The results have shown that T. baccata in Iran harbors a wide and significant diversity of fungal endophytes.

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References

  • Alborch L, Bragulat MR, Castellá G, Abarca ML, Cabañes FJ (2012) Mycobiota and mycotoxin contamination of maize flours and popcorn kernels for human consumption commercialized in Spain. Food Microbiol 32(1):97–103

    Article  CAS  PubMed  Google Scholar 

  • Alhanout K, Brunel JM, Ranque S, Rolain JM (2010) In vitro antifungal activity of aminosterols against moulds isolated from cystic fibrosis patients. J Antimicrob Chemother 65(6):1307–1309

    Article  CAS  PubMed  Google Scholar 

  • Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25(17):3389–3402

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ariyawansa HA, Thambugala KM, Manamgoda DS, Jayawardena R, Camporesi E, Boonmee S, Wanasinghe DN, Phookamsak R, Hongsanan S, Singtripop C, Chukeatirote E, Kang JC, Jones EB, Hyde KD (2015) Towards a natural classification and backbone tree for Pleosporaceae. Fungal Divers. doi:10.1007/s13225-015-0323-z

    Google Scholar 

  • Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? Ecol Soc Am 88(3):541–549

    Google Scholar 

  • Barber PA, Crous PW, Groenewald JZ, Pascoe IG, Keane P (2011) Reassessing Vermisporium (Amphisphaeriaceae), a genus of foliar pathogens of eucalypts. Persoonia 27:90–118

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bensch K, Groenewald JZ, Dijksterhuis J, Starink-Willemse M, Andersen B, Summerell BA, Shin HD, Dugan FM, Schroers HJ, Braun U, Crous PW (2010) Species and ecological diversity within the Cladosporium cladosporioides complex (Davidiellaceae, Capnodiales). Stud Mycol 67:1–94

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Boerema GH, de Gruyter J, Noordeloos ME, Hamers MEC (2004) Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, CAB International, Wallingford

    Book  Google Scholar 

  • Booth C (1971) The genus Fusarium. Commonwealth Mycological Institute, Kew

    Google Scholar 

  • Caruso M, Colombo AL, Fedeli L, Pavesi A, Quaroni S, Saracchi M, Ventrella G (2000) Isolation of endophytic fungi and Actinomycetes taxane producers. Ann Microbiol 50(1):3–14

    CAS  Google Scholar 

  • Chesters CGC, Greenhalgh GN (1964) Geniculosporium serpens gen. et sp. nov., the imperfect state of Hypoxylon. Trans Br Mycol Soc 47(3):393–401

    Article  Google Scholar 

  • Crozier J, Thomas SE, Aime MC, Evans HC, Holmes KA (2006) Molecular characterization of fungal endophytic morphospecies isolated from stems and pods of Theobroma cacao. Plant Pathol 55:783–789

    Article  CAS  Google Scholar 

  • Cueva C, Moreno-Arribas MV, Bartolomé B, Salazar Ó, Vicente MF, Bills GF (2011) Antibiosis of vineyard ecosystem fungi against food-borne microorganisms. Res Microbiol 162(10):1043–1051

    Article  CAS  PubMed  Google Scholar 

  • Duckett JG, Ligrone R (2008) A cytological analysis of basidiomycetous endophytes in New Zealand Aneuraceae (simple thalloid liverworts, Metzgeriidae); confirmation of the derived status of Verdoornia. Can J Bot 86:346–358

    Article  CAS  Google Scholar 

  • Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  CAS  PubMed  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Gazis R, Chaverri P (2010) Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru. Fungal Ecol 3:240–254

    Article  Google Scholar 

  • Hansen K, Læssøe T, Pfister DH (2002) Phylogenetic diversity in the core group of Peziza inferred from ITS sequences and morphology. Mycol Res 106(8):879–902

    Article  CAS  Google Scholar 

  • Hassan AEHA (2007) Novel natural products from endophytic fungi of Egyptian medicinal plants—chemical and biological characterization. PhD thesis, University of Dusseldorf

  • Haugland RA, Heckman JL (1998) Identification of putative sequence specific PCR primers for detection of the toxigenic fungal species Stachybotrys chartarum. Mol Cell Probes 12(6):387–396

    Article  CAS  PubMed  Google Scholar 

  • Hedges SB (1992) The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol Biol Evol 9:366–369

    CAS  PubMed  Google Scholar 

  • Ho HM, Chuang SC, Chen SJ (2004) Notes on Zygomycetes of Taiwan (IV): three Absidia species (Mucoraceae). Fungal Sci 19(3–4):125–131

    Google Scholar 

  • Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM (2010) Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol 54(3):957–969

    Article  CAS  PubMed  Google Scholar 

  • Huang Y, Wang J, Li G, Zheng Z, Su W (2001) Antitumor and antifungal activities in endophytic fungi isolated from pharmaceutical plants Taxus mairei, Cephalataxus fortunei and Torreya grandis. FEMS Immunol Med Microbiol 31:163–167

    Article  CAS  PubMed  Google Scholar 

  • Hyde KD, Soytong K (2008) The fungal endophyte dilemma. Fungal Divers 33:163–173

    Google Scholar 

  • Hyde KD, Jones EG, Liu JK, Ariyawansa H, Boehm E, Boonmee S et al (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Article  Google Scholar 

  • Kirschner R, Pang KL, Jones EBG (2013) Two cheirosporous hyphomycetes reassessed based on morphological and molecular examination. Mycol Prog 12:29–36

    Article  Google Scholar 

  • Kusari S, Spiteller M (2012) Metabolomics of endophytic fungi producing associated plant secondary metabolites: progress, challenges and opportunities. In: Roessner U (ed) Metabolomics. InTech, Rijeka, pp 241–266

    Google Scholar 

  • Kusari S, Hertweck C, Spiteller M (2012) Chemical ecology of endophytic fungi: origins of secondary metabolites. Chem Biol 19(7):792–798

    Article  CAS  PubMed  Google Scholar 

  • Liew EC, Aptroot A, Hyde KD (2002) An evaluation of the monophyly of Massarina based on ribosomal DNA sequences. Mycologia 94(5):803–813

    Article  CAS  PubMed  Google Scholar 

  • Liu D, Coloe S, Baird R, Pedersen J (2000) Rapid mini-preparation of fungal DNA for PCR. J Clin Microbiol 38(1):471

    CAS  PubMed  PubMed Central  Google Scholar 

  • Liu K, Ding X, Deng B, Chen W (2009) Isolation and characterization of endophytic taxol-producing fungi from Taxus chinensis. J Ind Microbiol Biotechnol 36(9):1171–1177

    Article  CAS  PubMed  Google Scholar 

  • Mirjalili MH, Farzaneh M, Bonfill M, Rezadoost H, Ghassempour A (2012) Isolation and characterization of Stemphylium sedicola SBU-16 as a new endophytic Taxol-producing fungus from Taxus baccata grown in Iran. FEMS Microbiol Lett 328:122–129

    Article  CAS  PubMed  Google Scholar 

  • Nasiri Madiseh Z, Mofid MR, Ebrahimi M, Khayyam Nekoei SM, Khosro Shahli M (2010) Isolation of Taxol-producing endophytes fungi from Iranian yew (Taxus baccata L.). J Shahrekord Uni Med Sci 11(4):101–106

    Google Scholar 

  • Park HG, Managbanag JR, Stamenova EK, Jong SC (2004) Comparative analysis of common indoor Cladosporium species based on molecular data and conidial characters. Mycotaxon 89(2):441–451

    Google Scholar 

  • Rivera-Orduña FN, Suarez-Sanchez RA, Flores-Bustamante ZR, Gracida-Rodriguez JN, Flores-Cotera LB (2011) Diversity of endophytic fungi of Taxus globosa (Mexican yew). Fungal Divers 47(1):65–74

    Article  Google Scholar 

  • Rodriguez RJ, White JF Jr, Arnold AE, Redman RS (2009) Fungal endophytes: diversity and functional roles. New Phytol 182:314–330

    Article  CAS  PubMed  Google Scholar 

  • Rungjindamai N, Pinruan U, Choeyklin R, Hattori T, Jones EBG (2008) Molecular characterization of Basidiomycetous endophytes isolated from leaves, rachis and petioles of the oil palm, Elaeis guineensis. Thailand Fungal Divers 33:139–161

    Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  • Sánchez Márquez S, Bills GF, Zabalgogeazcoa I (2007) The endophytic mycobiota of the grass Dactylis glomerata. Fungal Divers 27:171–195

    Google Scholar 

  • Sánchez Márquez S, Bills GF, Domínguez Acuña L, Zabalgogeazcoa I (2010) Endophytic mycobiota of leaves and roots of the grass Holcus lanatus. Fungal Divers 41:115–123

    Article  Google Scholar 

  • Schoch CL, Crous PW, Groenewald JZ, Boehm EW, Burgess TI, De Gruyter J et al (2009) A class-wide phylogenetic assessment of Dothideomycetes. Stud Mycol 64:1–15

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schubert K, Greslebin A, Groenewald JZ, Crous PW (2009) New foliicolous species of Cladosporium from South America. Persoonia 22:111–122

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sieber TN (2007) Endophytic fungi in forest trees: are they mutualists? Fungal Biol Rev 21:75–89

    Article  Google Scholar 

  • Simmons EG (2007) Alternaria: an identification manual. CBS biodiversity series, no. 6. CBS Fungal Biodiversity Centre, Utrecht

  • Sridhar KR, Raviraja NS (1995) Endophytes: a crucial issue. Curr Sci 69:570–571

    Google Scholar 

  • Strobel G, Daisy B (2003) Bioprospecting for microbial endophytes and their natural products. Microbiol Mol Biol Rev 67(4):491–502

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Strobel G, Yang X, Sears J, Kramer R, Sidhu RS, Hess WM (1996) Taxol from Pestalotiopsis microspora, an endophytic fungus of Taxus wallachiana. Microbiology 142:435–440

    Article  CAS  PubMed  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731–2739

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thomas SE, Crozier J, Aime MC, Evans HC, Holmes KA (2008) Molecular characterisation of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador. Mycol Res 112:852–860

    Article  CAS  PubMed  Google Scholar 

  • Wang Y, Guo LD, Hyde KD (2005) Taxonomic placement of sterile morphotypes of endophytic fungi from Pinus tabulaeformis (Pinaceae) in northeast China based on rDNA sequences. Fungal Divers 20:235–260

    CAS  Google Scholar 

  • Wang YT, Lo HS, Wang PH (2008) Endophytic fungi from Taxus mairei in Taiwan: first report of Colletotrichum gloeosporioides as an endophyte of Taxus mairei. Bot Stud 49:39–43

    Google Scholar 

  • White TJ, Bruns TD, Lee SB, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and application. Academic, New York Press, pp 315–322

  • Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xue F, Zhang XG, Wang Y, Wang HZ (2005) Taxonomic studies of Stemphylium from China II: Stemphylium subglobuliferum sp. nov., and four new records. Mycosystema 24(3):322–329

    CAS  Google Scholar 

  • Zhao J, Zhou L, Wang J, Shan T, Zhong L, Liu X, Gao X (2010) Endophytic fungi for producing bioactive compounds originally from their host plants. In: Mendez-Vilas A (ed) Current research, technology and education topics in applied microbiology and microbial biotechnology. Formatex Research Center, Badajoz, pp 567–576

    Google Scholar 

  • Zhong S, Steffenson BJ (2001) Virulence and molecular diversity in Cochliobolus sativus. Phytopathology 91:469–476

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

The present research has been done based on a grant (73145563/6/05) given by the University of Tehran. So, the authors are pleased to appreciate the University of Tehran.

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Correspondence to Khalil-Berdi Fotouhifar.

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Jam Ashkezari, S., Fotouhifar, KB. Diversity of endophytic fungi of common yew (Taxus baccata L.) in Iran. Mycol Progress 16, 247–256 (2017). https://doi.org/10.1007/s11557-017-1274-4

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