Frontiers of Physics

, Volume 12, Issue 6, pp 1–15

Constructing backbone network by using tinker algorithm

  • Zhiwei He
  • Meng Zhan
  • Jianxiong Wang
  • Chenggui Yao
Research article

DOI: 10.1007/s11467-016-0645-7

Cite this article as:
He, Z., Zhan, M., Wang, J. et al. Front. Phys. (2017) 12: 1. doi:10.1007/s11467-016-0645-7
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Part of the following topical collections:
  1. Soft-Matter Physics and Complex Systems

Abstract

Revealing how a biological network is organized to realize its function is one of the main topics in systems biology. The functional backbone network, defined as the primary structure of the biological network, is of great importance in maintaining the main function of the biological network. We propose a new algorithm, the tinker algorithm, to determine this core structure and apply it in the cell-cycle system. With this algorithm, the backbone network of the cell-cycle network can be determined accurately and efficiently in various models such as the Boolean model, stochastic model, and ordinary differential equation model. Results show that our algorithm is more efficient than that used in the previous research. We hope this method can be put into practical use in relevant future studies.

Keywords

biological network backbone network tinker algorithm mathematical model 

Copyright information

© Higher Education Press and Springer-Verlag Berlin Heidelberg 2017

Authors and Affiliations

  • Zhiwei He
    • 1
  • Meng Zhan
    • 2
  • Jianxiong Wang
    • 3
  • Chenggui Yao
    • 1
  1. 1.Department of MathematicsShaoxing UniversityShaoxingChina
  2. 2.State Key Laboratory of Advanced Electromagnetic Engineering and Technology, School of Electrical and Electronic EngineeringHuazhong University of Science and TechnologyWuhanChina
  3. 3.College of ScienceHubei University of TechnologyWuhanChina