Abstract
Heavy metals, which have severe toxic effects on plants, animals, and human health, are serious pollutants of the modern world. Remediation of heavy metal pollution is utmost necessary. Among different approaches used for such remediation, phytoremediation is an emerging technology. Research is in progress to enhance the efficiency of this plant-based technology. In this regard, the role of rhizospheric and symbiotic microorganisms is important. It was assessed by enumeration of data from the current studies that efficiency of phytoremediation can be enhanced by assisting with diazotrophs. These bacteria are very beneficial because they bring metals to more bioavailable form by the processes of methylation, chelation, leaching, and redox reactions and the production of siderophores. Diazotrophs also posses growth-promoting traits including nitrogen fixation, phosphorous solubilization, phytohormones synthesis, siderophore production, and synthesis of ACC-deaminase which may facilitate plant growth and increase plant biomass, in turn facilitating phytoremediation technology. Thus, the aim of this review is to highlight the potential of diazotrophs in assisting phytoremediation of heavy metals in contaminated soils. The novel current assessment of literature suggests the winning combination of diazotroph with phytoremediation technology.
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Abdelatey LM, Khalil WK, Ali TH, Mahrous KF (2011) Heavy metal resistance and gene expression analysis of metal resistance genes in gram-positive and gram-negative bacteria present in egyptian soils. J Appl Sci Environ San 6:201–211
Adriano DC (2001) Trace elements in terrestrial environments: biogeochemistry, bioavailability, and risks of metals. University of Georgia, Aitken, pp 15–20
Ahemad M, Kibret M (2014) Mechanisms and applications of plant growth promoting rhizobacteria: current perspective. J King Saud Univ Sci 26:1–20
Ali H, Khan E, Sajad MA (2013) Phytoremediation of heavy metals—concepts and applications. Chemosphere 91:869–881
Altinozlu H, Karagoz A, Polat T, Unver I (2012) Nickel hyperaccumulation by natural plants in Turkish serpentine soils. Turk J Bot 36:269–280
Banasova V, Horak O, Nadubinska M, Ciamporova M (2008) Heavy metal content in Thlaspi caerulescens J. et C. Presl growing on metalliferous and non-metalliferous soils in Central Slovakia. Int J Environ Pollut 33:133–145
Bani A, Pavlova D, Echevarria G, Mullai A, Reeves RD, Morel JL, Sulce S (2010) Nickel hyperaccumulation by the species of Alyssum and Thlaspi (Brassicaceae) from the ultramafic soils of the Balkans. Bot Serbica 34:3–14
Beskoski VP, Gojgic-Cvijovic G, Milic J, Ilic M, Miletic S, Solevic T, Vrvic MM (2011) Ex situ bioremediation of a soil contaminated by mazut (heavy residual fuel oil)—a field experiment. Chemosphere 83:34–40
Boopathy R (2000) Factors limiting bioremediation technologies. Bioresour Technol 74:63–67
Braud A, Jezequel K, Bazot S, Lebeau T (2009) Enhanced phytoextraction of an agricultural Cr- and Pb-contaminated soil by bioaugmentation with siderophore-producing bacteria. Chemosphere 74:280–286
Burd GI, Dixon DG, Glick RR (2000) Plant growth promoting bacteria that decrease heavy metal toxicity in plants. Can J Microbiol 46:237–245
Carrasco JA, Armario P, Pajuelo E, Burgos A, Caviedes MA, López R, Chamber MA, Palomares AJ (2005) Isolation and characterization of symbiotically effective Rhizobium resistant to arsenic and heavy metals after the toxic spill at the Aznalcollar pyrite mine. Soil Biol Biochem 37:1131–1140
Chaudhary HJ, Peng G, Hu M, He Y, Yang L, Luo Y, Tan Z (2012) Genetic diversity of endophytic diazotrophs of the wild rice, Oryza alta and identification of the new diazotroph, Acinetobacter oryzae sp. nov. Microb Ecol 63:813–821
Chehregani A, Malayeri B (2007) Removal of heavy metals by native accumulator plants. Int J Agric Biol 9:462–465
Chen WM, Wu CH, James EK, Chang JS (2008) Metal biosorption capability of Cupriavidus taiwanensis and its effects on heavy metal removal by nodulated Mimosa. J Hazard Mater 151:364–371
Daniels R, Vanderleyden J, Michiels J (2004) Quorum sensing and swarming migration in bacteria. FEMS Microbiol Rev 28:261–289
Dary M, Chamber-Perez M, Palomares A, Pajuelo E (2010) In situ phytostabilisation of heavy metal polluted soils using Lupinus luteus inoculated with metal resistant plant-growth promoting rhizobacteria. J Hazard Mater 177:323–330
de-Bashan LE, Hernandez JP, Bashan Y (2012) The potential contribution of plant growth promoting bacteria to reduce environmental degradation—a comprehensive evaluation. Appl Soil Ecol 61:171–189
Dobbelaere S, Vanderleyden J, Okon Y (2003) Plant growth promoting effects of diazotrophs in the rhizosphere. Crit Rev Plant Sci 22:107–149
Döbereiner J, Day JM (1976) Associative symbioses in tropical grasses: characterization of microorganisms and dinitrogen-fixing sites. In: Newton WE, Nyman CJ (eds) Proc. 1 Intern. Symp. on Nitrogen Fixation. Washignton State University Press, Washignton, pp 518–538
Döbereiner J, Pedrosa FO (1987) Nitrogen-fixing bacteria in nonleguminous crop plants, 1st edn. Springer, New York
Döbereiner J, Day JM, Dart PJ (1972) Nitrogenase activity and oxygen sensitivity of the Paspalum notatum—Azotobacter paspali association. J Gen Microbiol 71:103–116
Doble M, Kumar A (2005) Biotreatment of industrial effluents. Elsvier, Butterworth-Heinemann, UK, pp 1–5
Duruibe JO, Ogwuegbu MOC, Egwurugwu JN (2007) Heavy metal pollution and human biotoxic effects. Int J Phys Sci 2:112–118
Gadd GM (2000) Bioremedial potential of microbial mechanisms of metal mobilization and immobilization. Curr Opin Biotechnol 11:271–279
Gadd GM (2004) Microbial influence on metal mobility and application to bioremediation. Geoderma 122:109–119
Gadd GM (2009) Biosorption: critical review of scientific rationale, environmental importance and significance for pollution treatment. J Chem Technol Biotechnol 84:13–28
Garcia-Salgado S, Garcia-Casillas D, Quijano-Nieto MA, Bonilla-Simon MM (2012) Arsenic and heavy metal uptake and accumulation in native plant species from soils polluted by mining activities. Water Air Soil Pollut 223:559–572
Ghosh M, Singh S (2005) A review on phytoremediation of heavy metals and utilization of it’s by products. Asian J Energy Environ 3:214–231
Glick BR (2003) Phytoremediation: synergistic use of plants and bacteria to clean up the environment. Biotechnol Adv 21:383–393
Glick BR (2010) Using soil bacteria to facilitate phytoremediation. Biotechnol Adv 28:367–374
Glick BR (2012) Plant growth-promoting bacteria: mechanisms and applications. Scientifica 2012:1–15
Graham PH, Vance CP (2000) Nitrogen fixation in perspective: an overview of research and extension needs. Field Crop Res 65:93–106
Hadi F, Bano A (2010) Effect of diazotrophs (Rhizobium and Azotobacter) on growth of maize (Zea mays L.) and accumulation of Lead (Pb) in different plant parts. Pak J Bot 42:4363–4370
Handelsman J, Stabb EV (1996) Biocontrol of soil borne plant pathogens. Plant Cell 8:1855–1869
Hayat R, Sheirdil RA, Iftikhar-ul-Hassan M, Ahmed I (2013) Characterization and identification of compost bacteria based on 16S rRNA gene sequencing. Ann Microbiol 63:905–912
Hussain A, Abbas N, Arshad F, Akram M, Khan ZI, Ahmad K, Mansha M, Mirzaei F (2013) Effects of diverse doses of Lead (Pb) on different growth attributes of Zea-Mays L. Agric Sci 4:262–265
Ike A, Sriprang R, Ono H, Murooka Y, Yamashita M (2007) Bioremediation of cadmium contaminated soil using symbiosis between leguminous plant and recombinant rhizobia with the MTL4 and the PCS genes. Chemosphere 66:1670–1676
Ike A, Sriprang R, Ono H, Murooka Y, Yamashita M (2008) Promotion of metal accumulation in nodule of Astragalus sinicus by the expression of the iron-regulated transporter gene in Mesorhizobium huakuii subsp. rengei B3. J Biosci Bioeng 105:642–648
Iqbal M, Khan AG, Anwar-ul-hassan AM (2012) Soil physical health indices, soil organic carbon, nitrate contents and wheat growth as influenced by irrigation and nitrogen rates. Int J Agric Biol 14:1–10
Jabeen R, Ahmad A, Iqbal M (2009) Phytoremediation of heavy metals: physiological and molecular mechanisms. Bot Rev 75:339–364
Jiang C, Sheng X, Qian M, Wang Q (2008) Isolation and characterization of a heavy metal-resistant Burkholderia sp. from heavy metal-contaminated paddy field soil and its potential in promoting plant growth and heavy metal accumulation in metal-polluted soil. Chemosphere 72:157–164
Jones DL (1998) Organic acids in the rhizosphere—a critical review. Plant Soil 205:25–44
Joshi PM, Juwarkar AA (2009) In vivo studies to elucidate the role of extracellular polymeric substances from Azotobacter in immobilization of heavy metals. Environ Sci Technol 43:5884–5889
Juwarkar AA, Nair A, Dubey KV, Singh SK, Devotta S (2007) Biosurfactant technology for remediation of cadmium and lead contaminated soils. Chemosphere 10:1996–2002
Kalve S, Sarangi BK, Pandey RA, Chakrabarti T (2011) Arsenic and chromium hyperaccumulation by an ecotype of Pteris vittata- prospective for phytoextraction from contaminated water and soil. Curr Sci 100:888–894
Kamran MA, Mufti R, Mubariz N, Syed JH, Bano A, Javed MT, Chaudhary HJ (2014) The potential of the flora from different regions of Pakistan in phytoremediation: a review. Environ Sci Pollut Res 21:801–812
Khan AG (2005) Role of soil microbes in the rhizosphere of plants growing on trace metal contaminated soils in phytoremediation. J Trace Elem Med Biol 18:355–364
Khan S, Hesham AE, Qiao M, Rehman S, He JZ (2010) Effects of Cd and Pb on soil microbial community structure and activities. Environ Sci Pollut Res 17:288–296
Kidd P, Barcelo J, Bernal MP, Navari-Izzo F, Poschenrieder C, Shilev S et al (2009) Trace element behaviour at the root–soil interface: implications in phytoremediation. Environ Exp Bot 67:243–259
Kuiper I, Lagendijk EL, Bloemberg GV, Lugtenberg BJJ (2004) Rhizoremediation: a beneficial plant–microbe interaction. Mol Plant-Microbe Interact 17:6–15
Kumar KV, Srivastava S, Singh N, Behl HM (2009) Role of metal resistant plant growth promoting bacteria in ameliorating fly ash to the growth of Brassica juncea. J Hazard Mater 170:51–57
Küpper H, Lombi E, Zhao FJ, Wieshammer G, McGrath SP (2001) Cellular compartmentation of nickel in the hyperaccumulators Alyssum lesbiacum, Alyssum bertolonii and Thlaspi goesingense. J Exp Bot 52:2291–2300
Laskar F, Sharma GD, Deb B (2013) Characterization of plant growth promoting traits of diazotrophic bacteria and their inoculating effects on growth and yield of rice crops. Biotechnology 2:3–5
Li Y-M, Chaney R, Brewer E, Roseberg R, Angle JS, Baker A, Reeves R, Nelkin J (2003) Development of a technology for commercial phytoextraction of nickel: economic and technical considerations. Plant Soil 249:107–115
Lombi E, Zhao F, Dunham S, McGrath S (2001) Phytoremediation of heavy metal-contaminated soils:natural hyperaccumulation versus chemically enhanced phytoextraction. J Environ Qual 30:1919–1926
Lovley DR (2000) Fe(III) and Mn(IV) reduction. In: Lovley DR (ed) Environmental microbe–metal interactions. Am Soc Microbiol, Washington, pp. 3–30
Ma Y, Prasad MNV, Rajkumar M, Freitas H (2011a) Plant growth promoting rhizobacteria and endophytes accelerate phytoremediation of metalliferous soils. Biotechnol Adv 29:248–258
Ma Y, Rajkumar M, Luo Y, Freitas H (2011b) Inoculation of endophytic bacteria on host and non-host plants—effects on plant growth and Ni uptake. J Hazard Mater 195:230–237
Neubauer U, Furrer G, Schulin R (2002) Heavy metal sorption on soil minerals affected by the siderophore desferrioxamine B: the role of Fe(III) (hydr)oxides and dissolved Fe(III). Eur J Soil Sci 53:45–55
Nie L, Shah S, Burd GI, Dixon DG, Glick BR (2002) Phytoremediation of arsenate contaminated soil by transgenic canola and the plant growth-promoting bacterium Enterobacter cloacae CAL2. Plant Physiol Biochem 40:355–361
Nonnoi F, Chinnaswamy A, García de la Torre VS, Coba de la Peña T, Lucas MM, Pueyo JJ (2012) Metal tolerance of rhizobial strains isolated from nodules of herbaceous legumes Medicago spp. and Trifolium spp. growing in mercury-contaminated soils. Appl Soil Ecol 61:49–59
Omura Y, Shimotsuura Y, Fukuoka A, Fukuoka H, Nomoto T (1996) Significant mercury deposits in internal organs following the removal of dental amalgam, & development of pre-cancer on the gingiva and the sides of the tongue and their represented organs as a result of inadvertent exposure to strong curing light (used to solidify synthetic dental filling material) & effective treatment: a clinical case report, along with organ representation areas for each tooth. Acupunct Electrother Res 21:133–160
Pandey VC (2012) Phytoremediation of heavy metals from fly ash pond by Azolla caroliniana. Ecotoxicol Environ Saf 82:8–12
Park JD (2010) Heavy metal poisoning. Hanyang Med Rev 30:319–325
Pavel VL, Sobariu DL, Tudorache Fertu ID, Statescu F, Gaverilescu M (2013) Symbiosis in the environment biomanagement of soils contaminated with heavy metals. Eur J Sci Theol 9:211–224
Pedraza RO (2008) Recent advances in nitrogen-fixing acetic acid bacteria. Int J Food Microbiol 125:25–35
Rai PK (2008) Technical note: phytoremediation of Hg and Cd from industrial effluents using an aquatic free floating macrophyte Azolla pinnata. Int J Phytoremed 10:430–439
Rajkumar M, Ae N, Freitas H (2009) Endophytic bacteria and their potential to enhance heavy metal phytoextraction. Chemosphere 77:153–160
Rajkumar M, Ae N, Prasad MNV, Freitas H (2010) Potential of siderophore-producing bacteria for improving heavy metal phytoextraction. Trends Biotechnol 28:142–149
Rajkumar M, Sandhya S, Prasad MNV, Freitas H (2012) Perspectives of plant-associated microbes in heavy metal phytoremediation. Biotechnol Adv 30:1562–1574
Raju PN, Evans HJ, Seidler RJ (1972) An asymbiotic nitrogen-fixing bacterium from the root environment of corn. Proc Natl Acad Sci 69:3474–3478
Razi SS, Sen SP (1996) Amelioration of water stress effects on wetland rice by urea-N, plant growth regulators, and foliar spray of a diazotrophic bacterium Klebsiella sp. Biol Fertil Soils 23:454–458
Ribeiro de Souza SC, López A, de Andrade S, Anjos de Souza L, Schiavinato MA (2012) Lead tolerance and phytoremediation potential of Brazilian leguminous tree species at the seedling stage. J Environ Manag 110:299–307
Ryan PR, Delhaize E, Jones DL (2001) Function and mechanism of organic anion exudation from plant roots. Annu Rev Plant Physiol Plant Mol Biol 52:527–560
Sakakibara M, Ohmori Y, Ha NTH, Sano S, Sera K (2011) Phytoremediation of heavy metal‐contaminated water and sediment by Eleocharis acicularis. Clean Soil Air Water 39:735–741
Sarma H (2011) Metal hyperaccumulation in plants: a review focusing on phytoremediation technology. J Environ Sci Technol 4:118–138
Schalk IJ, Hannauer M, Braud A (2011) New roles for bacterial siderophores in metal transport and tolerance. Environ Microbiol 13:2844–2854
Sheng X, He L, Wang Q, Ye H, Jiang C (2008a) Effects of inoculation of biosurfactant-producing Bacillus sp. J119 on plant growth and cadmium uptake in a cadmium-amended soil. J Hazard Mater 155:17–22
Sheng XF, Xia JJ, Jiang CY, He LY, Qian M (2008b) Characterization of heavy metal-resistant endophytic bacteria from rape Brassica napus roots and their potential in promoting the growth and lead accumulation of rape. Environ Pollut 156:1164–1170
Smith SR, Jaffe DM, Skinner MA (1997) Case report of metallic mercury injury. Pediatr Emerg Care 13:114–116
Sriprang R, Hayashi M, Ono H, Takagi M, Hirata K, Murooka Y (2003) Enhanced accumulation of Cd 2+ by a Mesorhizobium sp. transformed with a gene from Arabidopsis thaliana coding for phytochelatin synthase. Appl Environ Microbiol 69:1791–1796
Tien TM, Gaskins MH, Hubbell DH (1979) Plant growth substances produced by Azospirillum brasilense and their effect on the growth of pearl millet (Pennisetum americanum). Appl Environ Microbiol 37:1016–1024
Van Ginneken L, Meers E, Guisson R, Ruttens A, Elst K, Tack FM, Vangronsveld J, Diels L, Dejonghe W (2007) Phytoremediation for heavy metal‐contaminated soils combined with bioenergy production. J Environ Eng Landsc Manag 15:227–236
Van Hullebusch ED, Lens PNL, Tabak HH (2005) Developments in bioremediation of soils and sediments polluted with metals and radionuclides. 3. Influence of chemical speciation and bioavailability on contaminants immobilization/mobilization bio-processes. Rev Environ Sci Biotechnol 4:185–212
Venkatesh NM, Vedaraman N (2012) Remediation of soil contaminated with copper using rhamnolipids produced from Pseudomonas aeruginosa MTCC 2297 using waste frying rice bran oil. Ann Microbiol 62:85–91
Vidali M (2001) Bioremediation. An overview. Pure Appl Chem 73:1163–1172
Wani PA, Khan MS, Zaidi A (2007a) Effect of metal tolerant plant growth promoting Bradyrhizobium sp. (vigna) on growth, symbiosis, seed yield and metal uptake by greengram plants. Chemosphere 70:36–45
Wani PA, Khan MS, Zaidi A (2007b) Impact of zinc-tolerant plant growth-promoting rhizobacteria on lentil grown on zinc-amended soil. Agron Sustain Dev 28:449–455
Wani PA, Khan MS, Zaidi (2008) Effect of metal-tolerant plant growth-promoting Rhizobium on the performance of pea grown in metal-amended soil. Arch Environ Contam Toxicol 55:33–42
Wenzel WW (2009) Rhizosphere processes and management in plant-assisted bioremediation (Phytoremediation) of soil. Plant Soil 321:385–408
Weyens N, van der Lelie D, Taghavi S, Newman L, Vangronsveld J (2009) Exploiting plant–microbe partnerships to improve biomass production and remediation. Trends Biotechnol 27:591–598
Whipps JM (2001) Microbial interactions and biocontrol in the rhizosphere. J Exp Bot 52:487–511
Wu CH, Wood TK, Mulchandani A, Chen W (2006a) Engineering plant-microbe symbiosis for rhizoremediation of heavy metals. Appl Environ Microbiol 72:1129–1134
Wu S, Cheung K, Luo Y, Wong M (2006b) Effects of inoculation of plant growth-promoting rhizobacteria on metal uptake by Brassica juncea. Environ Pollut 140:124–135
Wuana RA, Okieimen FE (2011) Heavy metals in contaminated soil: a review of sources, chemistry, risks and best available strategies for bioremediation. ISRN Ecol 2011:1–20
Yan-de J, Zhen-li H, Xiao-e (2007) Role of soil rhizobacteria in phytoremediation of heavy metal contaminated soils. J Zhejiang Univ Sci B 8:192–207
Yang X, Feng Y, Hi Z, Stofella PJ (2005) Molecular mechanisms of heavy metal hyperaccumulation and phytoremediation. J Trace Elem Med Biol 18:339–353
Yang S, Deng H, Li M (2008) Manganese uptake and accumulation in a woody hyperaccumulator, Schima superba. Plant Soil Environ 54:441–446
Zahran HH (1999) Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate. Microbiol Mol Biol Rev 63:968–989
Zhang X, Xia H, Li Z, Zhuang P, Gao B (2011) Identification of a new potential Cd-hyperaccumulator Solanum photeinocarpum by soil seed bank-metal concentration gradient method. J Hazard Mater 189:414–419
Zhao F, Dunham S, McGrath S (2002) Arsenic hyperaccumulation by different fern species. New Phytol 156:27–31
Zhao FJ, Lombi E, McGrath SP (2003) Assessing the potential for zinc and cadmium phytoremediation with the hyperaccumulator Thlaspi caerulescens. Plant Soil 249:37–43
Acknowledgments
We gratefully acknowledge Prof. Elena Maestri (Editor-ESPR) as well as two anonymous reviewers for their valuable feedback for our work. We are very grateful to Prof. Bernard R. Glick from Department of Biology, University of Waterloo, for the critical reading and improvement of our manuscript. We are also thankful to Dr. Abid Hussain, Faculty of Agriculture and Food Sciences, Department of Arid Land Agriculture, King Faisal University, The Kingdom of Saudi Arabia.
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Ullah, A., Mushtaq, H., Ali, H. et al. Diazotrophs-assisted phytoremediation of heavy metals: a novel approach. Environ Sci Pollut Res 22, 2505–2514 (2015). https://doi.org/10.1007/s11356-014-3699-5
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DOI: https://doi.org/10.1007/s11356-014-3699-5