Skip to main content
Log in

Large Deformation Diffeomorphic Metric Curve Mapping

  • Published:
International Journal of Computer Vision Aims and scope Submit manuscript

Abstract

We present a matching criterion for curves and integrate it into the large deformation diffeomorphic metric mapping (LDDMM) scheme for computing an optimal transformation between two curves embedded in Euclidean space ℝd. Curves are first represented as vector-valued measures, which incorporate both location and the first order geometric structure of the curves. Then, a Hilbert space structure is imposed on the measures to build the norm for quantifying the closeness between two curves. We describe a discretized version of this, in which discrete sequences of points along the curve are represented by vector-valued functionals. This gives a convenient and practical way to define a matching functional for curves. We derive and implement the curve matching in the large deformation framework and demonstrate mapping results of curves in ℝ2 and ℝ3. Behaviors of the curve mapping are discussed using 2D curves. The applications to shape classification is shown and experiments with 3D curves extracted from brain cortical surfaces are presented.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Allassonnière, S., Trouvé, A., & Younes, L. (2005). Geodesic shooting and diffeomorphic matching via textured meshes. In EMMCVPR (pp. 365–381).

  • Avants, B., & Gee, J. C. (2004). Geodesic estimation for large deformation anatomical shape and intensity averaging. NeuroImage, 23, 139–150.

    Article  Google Scholar 

  • Bakircioglu, M., Grenander, U., Khaneja, N., & Miller, M. I. (1998). Curve matching on brain surfaces using frenet distances. Human Brain Mapping, 6(5–6), 329–333.

    Article  Google Scholar 

  • Bakircioglu, M., Joshi, S., & Miller, M. (1999). Landmark matching on brain surfaces via large deformation diffeomorphisms on the sphere. In Image processing : Vol. 3661. Proc. SPIE medical imaging 1999 (pp. 710–715). SPIE: Bellingham.

    Google Scholar 

  • Beg, M. F. (2003). Variational and computational methods for flows of diffeomorphisms in image matching and growth in computational anatomy. Ph.D. dissertation, Johns Hopkins University.

  • Beg, M. F., Miller, M. I., Trouvé, A., & Younes, L. (2005). Computing large deformation metric mappings via geodesic flows of diffeomorphisms. International Journal of Computer Vision, 61(2), 139–157.

    Article  Google Scholar 

  • Besl, P., & McKay, N. (1992). A method for registration of 3-d shapes. IEEE Transactions on Pattern Analysis and Machine Intelligence, 14(2), 239–256.

    Article  Google Scholar 

  • Camion, V., & Younes, L. (2001). Geodesic interpolating splines. In M. Figueiredo, J. Zerubia, & K. Jain (Eds.), Lecture notes in computer sciences : Vol. 2134. EMMCVPR 2001. Berlin: Springer.

    Google Scholar 

  • Cao, Y., Miller, M., Winslow, R., & Younes, L. (2005a). Large deformation diffeomorphic metric mapping of vector fields. IEEE Transactions on Medical Imaging, 24, 1216–1230.

    Article  Google Scholar 

  • Cao, Y., Miller, M. I., Winslow, R. L., & Younes, L. (2005b). Large deformation diffeomorphic metric mapping of fiber orientations. In ICCV (pp. 1379–1386). Los Alamitos: IEEE Comput. Soc.

    Google Scholar 

  • Cox, M. F., & Cox, M. A. A. (2001). Multidimensional scaling. Boca Raton: Chapman and Hall.

    MATH  Google Scholar 

  • Dupuis, P., Grenander, U., & Miller, M. I. (1998). Variational problems on flows of diffeomorphisms for image matching. Quaterly of Applied Mathematics, 56, 587–600.

    MATH  MathSciNet  Google Scholar 

  • Durrleman, S., Pennec, X., Trouve, A., & Ayache, N. (2007). Measuring brain variability via sulcal lines registration: a diffeomorphic approach. In Int. conf. med. image comput. comput. assist. interv. (pp. 675–682).

  • Feldmar, J., & Ayache, N. (1996). Rigid, affine and locally affine registration of free-form surfaces. International Journal of Computer Vision, 18(2), 99–119.

    Article  Google Scholar 

  • Fillard, P., Arsigny, V., Pennec, X., Hayashi, K., Thompson, P., & Ayache, N. (2007). Measuring brain variability by extrapolating sparse tensor fields measured on sulcal lines. Neuroimage, 34, 639–650.

    Article  Google Scholar 

  • Gee, J. C., & Bajcsy, R. K. (1999). Elastic matching: Continuum mechanical and probabilistic analysis. In A. W. Toga (Ed.), Brain warping (pp. 183–196). San Diego: Academic Press.

    Chapter  Google Scholar 

  • Glaunès, J. (2005). Transport par difféomorphismes de points, de mesures et de courants pour la comparaison de formes etl l’anatomie numérique. Ph.D. dissertation, Université Paris 13.

  • Glaunès, J., Trouvé, A., & Younes, L. (2004). Diffeomorphic matching of distributions: A new approach for unlabelled point-sets and sub-manifolds matching. In CVPR (pp. 712–718). Los Alamitos: IEEE Comput. Soc.

    Google Scholar 

  • Glaunès, J., Trouvé, A., & Younes, L. (2006). Modeling planar shape variation via hamiltonian flows of curves. In H. Krim & A. Yezzi (Eds.), Statistics and analysis of shapes. Boston: Birkhauser.

    Google Scholar 

  • Grenander, U., & Miller, M. I. (1998). Computational anatomy: An emerging discipline. Quarterly of Applied Mathematics, 56(4), 617–694.

    MATH  MathSciNet  Google Scholar 

  • Han, X., Xu, C., & Prince, J. L. (2001). A topology preserving deformable model using level set. In CVPR’2001 (Kauai, HI) (Vol. 2, pp. 765–770). Los Alamitos: IEEE Comput. Soc.

    Google Scholar 

  • Han, X., Xu, C., Braga-Neto, U., & Prince, J. (2002). Topology correction in brain cortex segmentation using a multiscale, graph-based algorithm. IEEE Transactions on Medical Imaging, 21, 109–121.

    Article  Google Scholar 

  • Helm, P. A., Younes, L., Beg, M. F., Ennis, D. B., Leclercq, C., Faris, O. P., McVeigh, E., Kass, D., Miller, M. I., & Winslow, R. L. (2006). Evidence of structural remodeling in the dyssynchronous failing heart. Circulation Research, 98, 125–132.

    Article  Google Scholar 

  • Joshi, S. C., & Miller, M. I. (2000). Landmark matching via large deformation diffeomorphisms. IEEE Transactions on Image Processing, 9(8), 1357–1370.

    Article  MATH  MathSciNet  Google Scholar 

  • Joshi, M., Cui, J., Doolittle, K., Joshi, S., Van Essen, D., Wang, L., & Miller, M. I. (1999). Brain segmentation and the generation of cortical surfaces. NeuroImage, 9, 461–476.

    Article  Google Scholar 

  • Joshi, S. C., Davis, B., Jomier, M., & Gerig, G. (2004). Unbiased diffeomorphic atlas construction for computational anatomy. NeuroImage, 23, 151–160.

    Article  Google Scholar 

  • Joshi, A. A., Shattuck, D. W., Thompson, P. M., & Leahy, R. M. (2007). Registration of cortical surfaces using sulcal landmarks for group analysis of meg data. In International congress series: Vol. 1300. New frontiers in biomagnetism. Proceedings of the 15th international conference on biomagnetism (pp. 229–232), Vancouver, BC, Canada, 21–25 August 2006.

  • Klassen, E., Srivastava, A., Mio, W., & Joshi, S. H. (2003). Analysis of planar shapes using geodesic paths on shape spaces. IEEE Transactions on Pattern Analysis and Machine Intelligence, 26(3), 372–383.

    Article  Google Scholar 

  • Leow, A., Thompson, P. M., Protas, H., & Huang, S.-C. (2004). Brain warping with implicit representations. In ISBI (pp. 603–606). Los Alamitos: IEEE Comput. Soc.

    Google Scholar 

  • McLachlan, R. I., & Marsland, S. (2007). N-particle dynamics of the Euler equations for planar diffeomorphisms. Dynamical Systems, 22(3), 269–290.

    Article  MathSciNet  MATH  Google Scholar 

  • Michor, P. W., & Mumford, D. (2007). An overview of the Riemannian metrics on spaces of curves using the Hamiltonian approach. Applied Computational Harmonic Analysis, 23(1), 74–113.

    Article  MATH  MathSciNet  Google Scholar 

  • Miller, M. I., Massie, A. B., Ratnanather, J. T., Botteron, K. N., & Csernansky, J. G. (2000). Bayesian construction of geometrically based cortical thickness metrics. NeuroImage, 12, 676–687.

    Article  Google Scholar 

  • Miller, M. I., Trouvé, A., & Younes, L. (2002). On the metrics and Euler-Lagrange equations of computational anatomy. Annual Review of Biomedical Engineering, 4, 375–405.

    Article  Google Scholar 

  • Mio, W., & Srivastava, A. (2004). Elastic-string models for representation and analysis of planar shapes. In CVPR (2) (pp. 10–15).

  • Qiu, A., Younes, L., Wang, L., Ratnanather, J. T., Gillepsie, S. K., Kaplan, G., Csernansky, J. G., & Miller, M. I. (2007). Combining anatomical manifold information via diffeomorphic metric mappings for studying cortical thinning of the cingulate gyrus in schizophrenia. NeuroImage, 37, 821–833.

    Article  Google Scholar 

  • Ratnanather, J. T., Barta, P. E., Honeycutt, N. A., Lee, N., Morris, N. G., Dziorny, A. C., Hurdal, M. K., Pearlson, G. D., & Miller, M. I. (2003). Dynamic programming generation of boundaries of local coordinatized submanifolds in the neocortex: application to the planum temporale. NeuroImage, 20(1), 359–377.

    Article  Google Scholar 

  • Rettmann, M. E., Han, X., Xu, C., & Prince, J. L. (2002). Automated sulcal segmentation using watersheds on the cortical surface. NeuroImage, 15(2), 329–344.

    Article  Google Scholar 

  • Schmidt, F. R., Clausen, M., & Cremers, D. (2006). Shape matching by variational computation of geodesics on a manifold. In K. Franke, K.-R. Müller, & B. Nickolay (Eds.), Lecture notes in computer science : Vol. 4174. DAGM-symposium (pp. 142–151). Berlin: Springer.

    Google Scholar 

  • Sharon, E., & Mumford, D. (2006). 2d-shape analysis using conformal mapping. International Journal of Computer Vision, 70(1), 55–75.

    Article  Google Scholar 

  • Thompson, P., & Toga, A. (1996). A surface-based technique for warping three-dimensional image of the brain. IEEE Transactions on Medical Imaging, 15(4), 402–417.

    Article  Google Scholar 

  • Thompson, P. M., Schwartz, C., Lin, R. T., Khan, A. A., & Toga, A. W. (1996). Three–dimensional statistical analysis of sulcal variability in the human brain. Journal of Neuroscience, 16(13), 4261–4274.

    Google Scholar 

  • Thompson, P. M., Hayashi, K. M., Sowell, E. R., Gogtay, N., Giedd, J. N., Rapoport, J. L., de Zubicaray, G. I., Janke, A. L., Rose, S. E., Semple, J., Doddrell, D. M., Wang, Y., van Erp, T. G., Cannon, T. D., & Toga, A. W. (2004). Mapping cortical change in alzheimer’s disease, brain development, and schizophrenia. NeuroImage, 23, S2–S18.

    Article  Google Scholar 

  • Trouvé, A. (1995). An infinite dimensional group approach for physics based models (Technical report). Electronically available at http://www.cis.jhu.edu.

  • Twining, C., Marsland, S., & Taylor, C. (2002). Measuring geodesic distances on the space of bounded diffeomorphisms. In Proceedings of the British machine vision conference (BMVC), Cardiff, September 2002 (Vol. 2, pp. 847–856).

  • Vaillant, M., & Glaunès, J. (2005). Surface matching via currents. In Inform. proc. in med. imaging : Vol. 3565. Lecture notes in comput. sci. (pp. 381–392). Berlin: Springer.

    Google Scholar 

  • Welker, W. (1990). Why does cerebral cortex fissure and fold? Cerebral Cortex, 83, 3–136.

    Google Scholar 

  • Yang, C., Duraiswami, R., Gumerov, N., & Davis, L. (2003). Improved fast gauss transform and efficient kernel density estimation. In IEEE international conference on computer vision (pp. 464–471).

  • Younes, L. (1998). Computable elastic distances between shapes. SIAM Journal on Applied Mathematics, 58, 565–586.

    Article  MATH  MathSciNet  Google Scholar 

  • Zhang, Z. (1994). Iterative point matching for registration of free-form curves and surfaces. International Journal of Computer Vision, 13(2), 119–152.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Anqi Qiu.

Additional information

J. Glaunès and A. Qiu contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Glaunès, J., Qiu, A., Miller, M.I. et al. Large Deformation Diffeomorphic Metric Curve Mapping. Int J Comput Vis 80, 317–336 (2008). https://doi.org/10.1007/s11263-008-0141-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11263-008-0141-9

Keywords

Navigation