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Multivariate generalized linear mixed models with semi-nonparametric and smooth nonparametric random effects densities

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Abstract

We extend the family of multivariate generalized linear mixed models to include random effects that are generated by smooth densities. We consider two such families of densities, the so-called semi-nonparametric (SNP) and smooth nonparametric (SMNP) densities. Maximum likelihood estimation, under either the SNP or the SMNP densities, is carried out using a Monte Carlo EM algorithm. This algorithm uses rejection sampling and automatically increases the MC sample size as it approaches convergence. In a simulation study we investigate the performance of these two densities in capturing the true underlying shape of the random effects distribution. We also examine the implications of misspecification of the random effects distribution on the estimation of the fixed effects and their standard errors. The impact of the assumed random effects density on the estimation of the random effects themselves is investigated in a simulation study and also in an application to a real data set.

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References

  • Agresti, A., Caffo, B., Ohman-Strickland, P.: Examples in which misspecification of a random effects distribution reduces efficiency, and possible remedies. Comput. Stat. Data Anal. 47(3), 639–653 (2004)

    Article  MathSciNet  MATH  Google Scholar 

  • Aitkin, M.: A general maximum likelihood analysis of variance components in generalized linear models. Biometrics 55(1), 117–128 (1999)

    Article  MathSciNet  MATH  Google Scholar 

  • Booth, J.G., Hobert, J.P.: Maximizing generalized linear mixed model likelihoods with an automated Monte Carlo EM algorithm. J. R. Stat. Soc., Ser. B Stat. Methodol. 61, 265–285 (1999)

    Article  MATH  Google Scholar 

  • Breslow, N.E., Clayton, D.G.: Approximate inference in generalized linear mixed models. J. Am. Stat. Assoc. 88, 9–25 (1993)

    Article  MATH  Google Scholar 

  • Carroll, R.J., Hall, P.: Optimal rates of convergence for deconvolving a density. J. Am. Stat. Assoc. 83, 1184–1186 (1988)

    Article  MathSciNet  MATH  Google Scholar 

  • Chen, J., Zhang, D., Davidian, M.: A Monte Carlo EM algorithm for generalized linear mixed models with flexible random effects distribution. Biostatistics 3(3), 347–360 (2002)

    Article  MATH  Google Scholar 

  • Davidian, M., Gallant, AR: The nonlinear mixed effects model with a smooth random effects density. Biometrika 80, 475–488 (1993)

    Article  MathSciNet  MATH  Google Scholar 

  • Dempster, A.P., Laird, N.M., Rubin, D.B.: Maximum likelihood from incomplete data via the EM algorithm. J. R. Stat. Soc., Ser. B, Methodol. 39, 1–22 (1977)

    MathSciNet  MATH  Google Scholar 

  • Eilers, P.H.C., Marx, B.D.: Flexible smoothing with B-splines and penalties. Stat. Sci. 11(2), 89–121 (1996)

    Article  MathSciNet  MATH  Google Scholar 

  • Fahrmeir, L., Kaufmann, H.: Consistency and asymptotic normality of the maximum likelihood estimator in generalized linear models. Ann. Stat. 13, 342–368 (1985)

    Article  MathSciNet  MATH  Google Scholar 

  • Fahrmeir, L., Tutz, G.: Multivariate Statistical Modelling Based on Generalized Linear Models. Springer, Berlin (2001)

    MATH  Google Scholar 

  • Follmann, D.A., Lambert, D.: Generalizing logistic regression by nonparametric mixing. J. Am. Stat. Assoc. 84, 295–300 (1989)

    Article  Google Scholar 

  • Gallant, AR, Nychka, D.W.: Semi-nonparametric maximum likelihood estimation. Econometrica 55, 363–390 (1987)

    Article  MathSciNet  MATH  Google Scholar 

  • Gallant, R., Tauchen, G.: A nonparametric approach to nonlinear time series analysis: estimation and simulation. In: Brillinger, D., Caines, P., Geweke, J., Parzen, E., Rosenblatt, M., Taqqu, M. (eds.) New Directions in Time Series Analysis, Part II, pp. 71–92. Springer, Berlin (1992)

    Google Scholar 

  • Geweke, J.: Monte Carlo simulation and numerical integration. In: Amman, H.M., Kendrick, D.A., Rust, J. (eds.) Handbook of Computational Economics, pp. 731–800. Elsevier, Amsterdam (1996)

    Google Scholar 

  • Ghidey, W., Lesaffre, E., Eilers, P.: Smooth random effects distribution in a linear mixed model. Biometrics 60(4), 945–953 (2004)

    Article  MathSciNet  MATH  Google Scholar 

  • Hartzel, J., Agresti, A., Caffo, B.: Multinomial logit random effects models. Stat. Model. 1(2), 81–102 (2001)

    Article  MATH  Google Scholar 

  • Heagerty, P.J., Kurland, B.F.: Misspecified maximum likelihood estimates and generalised linear mixed models. Biometrika 88(4), 973–985 (2001)

    Article  MathSciNet  MATH  Google Scholar 

  • Hedeker, D., Gibbons, R.: Longitudinal Data Analysis. Wiley, Palo Alto (2006)

    MATH  Google Scholar 

  • Laird, N.: Nonparametric maximum likelihood estimation of a mixing distribution. J. Am. Stat. Assoc. 73, 805–811 (1978)

    Article  MathSciNet  MATH  Google Scholar 

  • Lesperance, M.L., Kalbfleisch, J.D.: An algorithm for computing the nonparametric MLE of a mixing distribution. J. Am. Stat. Assoc. 87, 120–126 (1992)

    Article  MATH  Google Scholar 

  • Lindsay, B.G.: The geometry of mixture likelihoods, part II: the exponential family. Ann. Stat. 11, 783–792 (1983)

    Article  MathSciNet  MATH  Google Scholar 

  • Litière, S., Alonso, A., Molenberghs, G.: The impact of a misspecified random-effects distribution on the estimation and the performance of inferential procedures in generalized linear mixed models. Stat. Med. 27(16), 3125–3144 (2008)

    Article  MathSciNet  Google Scholar 

  • Magder, L.S., Zeger, S.L.: A smooth nonparametric estimate of a mixing distribution using mixtures of Gaussians. J. Am. Stat. Assoc. 91, 1141–1151 (1996)

    Article  MathSciNet  MATH  Google Scholar 

  • McCulloch, C.E.: Maximum likelihood algorithms for generalized linear mixed models. J. Am. Stat. Assoc. 92, 162–170 (1997)

    Article  MathSciNet  MATH  Google Scholar 

  • Monahan, J.F.: An algorithm for generating chi random variables. ACM Trans. Math. Softw. 13, 168–172 (1987)

    Article  MathSciNet  MATH  Google Scholar 

  • Neuhaus, J.M., Hauck, W.W., Kalbfleisch, J.D.: The effects of mixture distribution misspecification when fitting mixed-effects logistic models. Biometrika 79, 755–762 (1992)

    Article  Google Scholar 

  • Tutz, G., Hennevogl, W.: Random effects in ordinal regression models. Comput. Stat. Data Anal. 22, 537–557 (1996)

    Article  MATH  Google Scholar 

  • Verbeke, G., Lesaffre, E.: A linear mixed-effects model with heterogeneity in the random-effects population. J. Am. Stat. Assoc. 91, 217–221 (1996)

    Article  MATH  Google Scholar 

  • Wei, G.C.G., Tanner, M.A.: A Monte Carlo implementation of the EM algorithm and the poor man’s data augmentation algorithms. J. Am. Stat. Assoc. 85, 699–704 (1990)

    Article  Google Scholar 

  • Zhang, D., Davidian, M.: Linear mixed models with flexible distribution of random effects for longitudinal data. Biometrics 57(3), 795–802 (2001)

    Article  MathSciNet  MATH  Google Scholar 

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Correspondence to Georgios Papageorgiou.

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Papageorgiou, G., Hinde, J. Multivariate generalized linear mixed models with semi-nonparametric and smooth nonparametric random effects densities. Stat Comput 22, 79–92 (2012). https://doi.org/10.1007/s11222-010-9207-y

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