Abstract
Australia and Canada are major exporters of malting barley (Hordeum vulgare L.), with Baudin from Australia and AC Metcalfe from Canada being the benchmark varieties for premium malting quality in the past 10 years. We used the barley doubled haploid population derived from a cross of Baudin and AC Metcalfe to map quantitative trait loci (QTLs) for malting quality. The results revealed different genetic architectures controlling malting quality for the two cultivars. Sixteen QTLs were identified and located on chromosomes 1H, 2H, 5H and 7H. The Australian barley Baudin mainly contributed to the malting quality QTL traits of high diastatic power and high β-glucanase on chromosome 1H, while Canadian barley AC Metcalfe mainly contributed to the QTL traits of high hot water extract, high free amino nitrogen, high α-amylase and low malt yield in chromosome 5HL telomere region. This study demonstrated the potential to breed new barley varieties with superior malting quality by integrating genes from Australian and Canadian malting barley varieties. This paper also provides methods to anchor traditional molecular markers without sequence information, such as amplified fragment length polymorphism markers, into the physical map of barley cv. ‘Morex’.
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References
Arends AM, Fox GP, Henry RJ, Marschke RJ, Symons MH (1995) Genetic and environmental variation in the diastatic power of Australian barley. J Cereal Sci 21(1):63–70
Barr AR, Karakousis A, Lance RCM, Logue SJ, Manning S, Chalmers KJ, Kretschmer JM, Boyd WJR, Collins HM, Roumeliotis S, Coventry SJ, Moody DB, Read BJ, Poulsen D, Li CD, Platz GJ, Inkerman PA, Panozzo JF, Cullis BR, Smith AB, Lim P, Langridge P (2003) Mapping and QTL analysis of the barley population Chebec × Harrington. Aust J Agric Res 54(11–12):1125–1130
Bezant J, Laurie D, Pratchett N, Chojecki J, Kearsey M (1997) Mapping QTL controlling yield and yield components in a spring barley (Hordeum vulgare L.) cross using marker regression. Mol Breed 3(1):29–38
Cakir M, Poulsen D, Galwey NW, Ablett GA, Chalmers KJ, Platz GJ, Park RF, Lance RCM, Panozzo JF, Read BJ, Moody DB, Barr AR, Johnston P, Li CD, Boyd WJR, Grime CR, Appels R, Jones MGK, Langridge P (2003) Mapping and QTL analysis of the barley population Tallon × Kaputar. Aust J Agric Res 54(11–12):1155–1162
Castro AJ, Benitez A, Hayes PM, Viega L, Wright L (2010) Coincident qualitative trait loci effects for dormancy, water sensitivity and malting quality traits in the BCD47 × Baronesse barley mapping population. Crop Pasture Sci 61(9):691–699
Clark SE, Hayes PM, Henson CA (2005) Characterization of barley tissue-ubiquitous β-amylase2 and effects of the single nucleotide polymorphisms on the enzyme’s thermostability. Crop Sci 45(5):1868–1876
Close TJ, Bhat PR, Lonardi S, Wu YH, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao SAM, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genom 10:582
Collins HM, Panozzo JF, Logue SJ, Jefferies SP, Barr AR (2003) Mapping and validation of chromosome regions associated with high malt extract in barley (Hordeum vulgare L.). Aust J Agric Res 54(11–12):1223–1240
Eagles HA, Bedggood AG, Panozzo JF, Martin PJ (1995) Cultivar and environmental-effects on malting quality in barley. Aust J Agric Res 46(5):831–844
Elia M, Swanston JS, Moralejo M, Casas A, Perez-Vendrell AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano JL (2010) A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph × Morex. Plant Breed 129(3):280–290
Emebiri LC, Moody DB, Panozzo JF, Read BJ (2004) Mapping of QTL for malting quality attributes in barley based on a cross of parents with low grain protein concentration. Field Crop Res 87(2–3):195–205
European-Brewery-Convention (1998) ‘Analytica EBC’. Method 4.5. Congress Method. Fachverlag Hans Carl, Nurnberg
Foster AE, Perterson GA, Banasik OJ (1967) Heritability of factors affecting malting quality of barley, Hordeum vulgare L. Crop Sci 7:611–613
Fox G, Logue S, Harasymow S, Taylor H, Ratcliffe M, Roumeliotis S, Onley K, Tansing P, Ferguson R, Glennie-Holmes M, Inkerman A, Tarr A, Evans B, Panozzo J, Osman A, Smith A (1999) Standardisation of diastatic power method for barley breeding programs. In: Paper presented at the Proceedings of the Ninth Barley Technology Symposium, Melbourne, Australia
Gutierrez L, Cuesta-Marcos A, Castro AJ, Zitzewitz JV, Schmitt M, Hayes PM (2011) Association mapping of malting quality quantitative trait loci in winter barley: positive signals from small germplasm arrays. Plant Genome 4(3):256–272
Han F, Ullrich SE, Kleinhofs A, Jones BL, Hayes PM, Wesenberg DM (1997) Fine structure mapping of the barley chromosome-1 centromere region containing malting-quality QTLs. Theor Appl Genet 95(5–6):903–910
Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesenberg D, Kleinhofs A (1993) Quantitative trait locus effects and environmental interaction in a sample of North-American barley germ plasm. Theor Appl Genet 87(3):392–401
Igartua E, Edney M, Rossnagel BG, Spaner D, Legge WG, Scoles GJ, Eckstein PE, Penner GA, Tinker NA, Briggs KG, Falk DE, Mather DE (2000) Marker-based selection of QTL affecting grain and malt quality in two-row barley. Crop Sci 40(5):1426–1433
Igartua E, Hayes PM, Thomas WTB, Meyer R, Mather DE (2002) Genetic control of quantitative grain and malt quality traits in barley. J Crop Prod 5(1/2):131–164
Knox CAP, Sonthayanon B, Chandra GR, Muthukrishnan S (1987) Structure and organization of 2 divergent α-amylase genes from barley. Plant Mol Biol 9(1):3–17
Laido G, Barabaschi D, Tondelli A, Gianinetti A, Stanca AM, Nicosia OLD, Di Fonzo N, Francia E, Pecchioni N (2009) QTL alleles from a winter feed type can improve malting quality in barley. Plant Breed 128(6):598–605
Li C, Ni P, Francki M, Hunter A, Zhang Y, Schibeci D, Li H, Tarr A, Wang J, Cakir M, Yu J, Bellgard M, Lance R, Appels R (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct Integr Genom 4(2):84–93
Li J, Huang XQ, Heinrichs F, Ganal MW, Roder MS (2005) Analysis of QTLs for yield, yield components, and malting quality in a BC3-DH population of spring barley. Theor Appl Genet 110(2):356–363
Li C, Cakir M, Lance R (2010) Genetic improvement of malting quality through conventional breeding and marker-assisted selection. In: Zhang GP, Li CD (eds) Genetics and improvement of barley malt quality. Springer, Berlin Heidelberg, pp 260–292
Marquez-Cedillo LA, Hayes PM, Jones BL, Kleinhofs A, Legge WG, Rossnagel BG, Sato K, Ullrich E, Wesenberg DM, Barley NA (2000) QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups. Theor Appl Genet 101(1–2):173–184
Mather DE, Tinker NA, LaBerge DE, Edney M, Jones BL, Rossnagel BG, Legge WG, Briggs KG, Irvine RB, Falk DE, Kasha KJ (1997) Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Sci 37(2):544–554
Matthies IE, Weise S, Roder MS (2009) Association of haplotype diversity in the α-amylase gene amy1 with malting quality parameters in barley. Mol Breed 23(1):139–152
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Stein N, Ariyadasa R, Schulte D, Poursarebani N, Zhou RN, Steuernagel B, Mascher M, Scholz U, Shi BJ, Langridge P, Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Close TJ, Muehlbauer GJ, Hedley P, Liu H, Morris J, Waugh R, Frenkel Z, Korol A, Berges H, Graner A, Stein N, Steuernagel B, Taudien S, Groth M, Felder M, Platzer M, Brown JWS, Schulman A, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Taudien S, Sampath D, Swarbreck D, Scalabrin S, Zuccolo A, Vendramin V, Morgante M, Mayer KFX, Schulman A, Conso IBGS (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491(7426):711–716
Mccleary BV, Codd R (1989) Measurement of β-amylase in cereal flours and commercial enzyme preparations. J Cereal Sci 9(1):17–33
Mccleary BV, Sheehan H (1987) Measurement of cereal α-amylase: a new assay procedure. J Cereal Sci 6(3):237–251
Oziel A, Hayes PM, Chen FQ, Jones B (1996) Application of quantitative trait locus mapping to the development of winter-habit malting barley. Plant Breed 115(1):43–51
Pallotta MA, Asayama S, Reinheimer JM, Davies PA, Barr AR, Jefferies SP, Chalmers KJ, Lewis J, Collins HM, Roumeliotis S, Logue SJ, Coventry SJ, Lance RCM, Karakousis A, Lim P, Verbyla AP, Eckermann PJ (2003) Mapping and QTL analysis of the barley population Amagi Nijo × WI2585. Aust J Agric Res 54(11–12):1141–1144
Panozzo JF, Eckermann PJ, Mather DE, Moody DB, Black CK, Collins HM, Barr AR, Lim P, Cullis BR (2007) QTL analysis of malting quality traits in two barley populations. Aust J Agric Res 58(9):858–866
Potokina E, Druka A, Luo ZW, Wise R, Waugh R, Kearsey M (2008) Gene expression quantitative trait locus analysis of 16,000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. Plant J 53(1):90–101
Ranford JC, Bryce JH, Morris PC (2002) PM19, a barley (Hordeum vulgare L.) gene encoding a putative plasma membrane protein, is expressed during embryo development and dormancy. J Exp Bot 53(366):147–148
Schmalenbach I, Pillen K (2009) Detection and verification of malting quality QTLs using wild barley introgression lines. Theor Appl Genet 118(8):1411–1427
Shu K, Zhang HW, Wang SF, Chen ML, Wu YR, Tang SY, Liu CY, Feng YQ, Cao XF, Xie Q (2013) ABI4 regulates primary seed dormancy by regulating the biogenesis of abscisic acid and gibberellins in Arabidopsis. PLoS Genet 9(6):e1003577
Szucs P, Blake VC, Bhat PR, Chao SM, Close TJ, Cuesta-Marcos A, Muehlbauer GJ, Ramsay L, Waugh R, Hayes PM (2009) An integrated resource for barley linkage map and malting quality QTL alignment. Plant Genome 2(2):134–140
Thomas WTB, Powell W, Swanston JS, Ellis RP, Chalmers KJ, Barua UM, Jack P, Lea V, Forster BP, Waugh R, Smith DB (1996) Quantitative trait loci for germination and malting quality characters in a spring barley cross. Crop Sci 36(2):265–273
van Ooijen JH (2004) MapQTL 5 software for the mapping quantitative trait loci in experimental populations. Plant Research International, Wageningen
Varshney RK, Marcel TC, Ramsay L, Russell J, Roder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114(6):1091–1103
Wenzl P, Li HB, Carling J, Zhou MX, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesna J, Cakir M, Poulsen D, Wang JP, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genom 7:206
Yang HA, Tao Y, Zheng ZQ, Zhang QS, Zhou GF, Sweetingham MW, Howieson JG, Li CD (2013) Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L. PLoS ONE 8(5):e64799
Yoshigi N, Okada Y, Sahara H, Koshino S (1994) PCR cloning and sequencing of the β-amylase cDNA from barley. J Biochem Tokyo 115(1):47–51
Zhou T, Takashi I, Ryouichi K, Naohiko H, Makoto K, Takehiro H, Kazuhiro S (2012) Malting quality quantitative trait loci on a high-density map of Mikamo golden × Harrington cross in barley (Hordeum vulgare L.). Mol Breed 30(1):103–112
Zhou G, Zhang Q, X-q Zhang, Tan C, Li C (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PLoS ONE 10(7):e0133161
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This work was supported by funding from Grains Research and Development Corporation (GRDC) of Australia (DAW00233), Department of Agriculture and Food Western Australia, and Western Australian State Agricultural Biotechnology Centre (SABC).
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Zhou, G., Panozzo, J., Zhang, Xq. et al. QTL mapping reveals genetic architectures of malting quality between Australian and Canadian malting barley (Hordeum vulgare L.). Mol Breeding 36, 70 (2016). https://doi.org/10.1007/s11032-016-0492-9
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DOI: https://doi.org/10.1007/s11032-016-0492-9