Skip to main content
Log in

QTL mapping reveals genetic architectures of malting quality between Australian and Canadian malting barley (Hordeum vulgare L.)

  • Published:
Molecular Breeding Aims and scope Submit manuscript

Abstract

Australia and Canada are major exporters of malting barley (Hordeum vulgare L.), with Baudin from Australia and AC Metcalfe from Canada being the benchmark varieties for premium malting quality in the past 10 years. We used the barley doubled haploid population derived from a cross of Baudin and AC Metcalfe to map quantitative trait loci (QTLs) for malting quality. The results revealed different genetic architectures controlling malting quality for the two cultivars. Sixteen QTLs were identified and located on chromosomes 1H, 2H, 5H and 7H. The Australian barley Baudin mainly contributed to the malting quality QTL traits of high diastatic power and high β-glucanase on chromosome 1H, while Canadian barley AC Metcalfe mainly contributed to the QTL traits of high hot water extract, high free amino nitrogen, high α-amylase and low malt yield in chromosome 5HL telomere region. This study demonstrated the potential to breed new barley varieties with superior malting quality by integrating genes from Australian and Canadian malting barley varieties. This paper also provides methods to anchor traditional molecular markers without sequence information, such as amplified fragment length polymorphism markers, into the physical map of barley cv. ‘Morex’.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2

Similar content being viewed by others

References

  • Arends AM, Fox GP, Henry RJ, Marschke RJ, Symons MH (1995) Genetic and environmental variation in the diastatic power of Australian barley. J Cereal Sci 21(1):63–70

    Article  CAS  Google Scholar 

  • Barr AR, Karakousis A, Lance RCM, Logue SJ, Manning S, Chalmers KJ, Kretschmer JM, Boyd WJR, Collins HM, Roumeliotis S, Coventry SJ, Moody DB, Read BJ, Poulsen D, Li CD, Platz GJ, Inkerman PA, Panozzo JF, Cullis BR, Smith AB, Lim P, Langridge P (2003) Mapping and QTL analysis of the barley population Chebec × Harrington. Aust J Agric Res 54(11–12):1125–1130

    Article  CAS  Google Scholar 

  • Bezant J, Laurie D, Pratchett N, Chojecki J, Kearsey M (1997) Mapping QTL controlling yield and yield components in a spring barley (Hordeum vulgare L.) cross using marker regression. Mol Breed 3(1):29–38

    Article  CAS  Google Scholar 

  • Cakir M, Poulsen D, Galwey NW, Ablett GA, Chalmers KJ, Platz GJ, Park RF, Lance RCM, Panozzo JF, Read BJ, Moody DB, Barr AR, Johnston P, Li CD, Boyd WJR, Grime CR, Appels R, Jones MGK, Langridge P (2003) Mapping and QTL analysis of the barley population Tallon × Kaputar. Aust J Agric Res 54(11–12):1155–1162

    Article  Google Scholar 

  • Castro AJ, Benitez A, Hayes PM, Viega L, Wright L (2010) Coincident qualitative trait loci effects for dormancy, water sensitivity and malting quality traits in the BCD47 × Baronesse barley mapping population. Crop Pasture Sci 61(9):691–699

    Article  Google Scholar 

  • Clark SE, Hayes PM, Henson CA (2005) Characterization of barley tissue-ubiquitous β-amylase2 and effects of the single nucleotide polymorphisms on the enzyme’s thermostability. Crop Sci 45(5):1868–1876

    Article  CAS  Google Scholar 

  • Close TJ, Bhat PR, Lonardi S, Wu YH, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao SAM, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genom 10:582

    Article  Google Scholar 

  • Collins HM, Panozzo JF, Logue SJ, Jefferies SP, Barr AR (2003) Mapping and validation of chromosome regions associated with high malt extract in barley (Hordeum vulgare L.). Aust J Agric Res 54(11–12):1223–1240

    Article  CAS  Google Scholar 

  • Eagles HA, Bedggood AG, Panozzo JF, Martin PJ (1995) Cultivar and environmental-effects on malting quality in barley. Aust J Agric Res 46(5):831–844

    Article  CAS  Google Scholar 

  • Elia M, Swanston JS, Moralejo M, Casas A, Perez-Vendrell AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano JL (2010) A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph × Morex. Plant Breed 129(3):280–290

    Article  CAS  Google Scholar 

  • Emebiri LC, Moody DB, Panozzo JF, Read BJ (2004) Mapping of QTL for malting quality attributes in barley based on a cross of parents with low grain protein concentration. Field Crop Res 87(2–3):195–205

    Article  Google Scholar 

  • European-Brewery-Convention (1998) ‘Analytica EBC’. Method 4.5. Congress Method. Fachverlag Hans Carl, Nurnberg

  • Foster AE, Perterson GA, Banasik OJ (1967) Heritability of factors affecting malting quality of barley, Hordeum vulgare L. Crop Sci 7:611–613

    Article  Google Scholar 

  • Fox G, Logue S, Harasymow S, Taylor H, Ratcliffe M, Roumeliotis S, Onley K, Tansing P, Ferguson R, Glennie-Holmes M, Inkerman A, Tarr A, Evans B, Panozzo J, Osman A, Smith A (1999) Standardisation of diastatic power method for barley breeding programs. In: Paper presented at the Proceedings of the Ninth Barley Technology Symposium, Melbourne, Australia

  • Gutierrez L, Cuesta-Marcos A, Castro AJ, Zitzewitz JV, Schmitt M, Hayes PM (2011) Association mapping of malting quality quantitative trait loci in winter barley: positive signals from small germplasm arrays. Plant Genome 4(3):256–272

    Article  Google Scholar 

  • Han F, Ullrich SE, Kleinhofs A, Jones BL, Hayes PM, Wesenberg DM (1997) Fine structure mapping of the barley chromosome-1 centromere region containing malting-quality QTLs. Theor Appl Genet 95(5–6):903–910

    Article  CAS  Google Scholar 

  • Hayes PM, Liu BH, Knapp SJ, Chen F, Jones B, Blake T, Franckowiak J, Rasmusson D, Sorrells M, Ullrich SE, Wesenberg D, Kleinhofs A (1993) Quantitative trait locus effects and environmental interaction in a sample of North-American barley germ plasm. Theor Appl Genet 87(3):392–401

    Article  CAS  PubMed  Google Scholar 

  • Igartua E, Edney M, Rossnagel BG, Spaner D, Legge WG, Scoles GJ, Eckstein PE, Penner GA, Tinker NA, Briggs KG, Falk DE, Mather DE (2000) Marker-based selection of QTL affecting grain and malt quality in two-row barley. Crop Sci 40(5):1426–1433

    Article  CAS  Google Scholar 

  • Igartua E, Hayes PM, Thomas WTB, Meyer R, Mather DE (2002) Genetic control of quantitative grain and malt quality traits in barley. J Crop Prod 5(1/2):131–164

    Article  CAS  Google Scholar 

  • Knox CAP, Sonthayanon B, Chandra GR, Muthukrishnan S (1987) Structure and organization of 2 divergent α-amylase genes from barley. Plant Mol Biol 9(1):3–17

    Article  CAS  PubMed  Google Scholar 

  • Laido G, Barabaschi D, Tondelli A, Gianinetti A, Stanca AM, Nicosia OLD, Di Fonzo N, Francia E, Pecchioni N (2009) QTL alleles from a winter feed type can improve malting quality in barley. Plant Breed 128(6):598–605

    Article  CAS  Google Scholar 

  • Li C, Ni P, Francki M, Hunter A, Zhang Y, Schibeci D, Li H, Tarr A, Wang J, Cakir M, Yu J, Bellgard M, Lance R, Appels R (2004) Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison. Funct Integr Genom 4(2):84–93

    Article  CAS  Google Scholar 

  • Li J, Huang XQ, Heinrichs F, Ganal MW, Roder MS (2005) Analysis of QTLs for yield, yield components, and malting quality in a BC3-DH population of spring barley. Theor Appl Genet 110(2):356–363

    Article  CAS  PubMed  Google Scholar 

  • Li C, Cakir M, Lance R (2010) Genetic improvement of malting quality through conventional breeding and marker-assisted selection. In: Zhang GP, Li CD (eds) Genetics and improvement of barley malt quality. Springer, Berlin Heidelberg, pp 260–292

    Google Scholar 

  • Marquez-Cedillo LA, Hayes PM, Jones BL, Kleinhofs A, Legge WG, Rossnagel BG, Sato K, Ullrich E, Wesenberg DM, Barley NA (2000) QTL analysis of malting quality in barley based on the doubled-haploid progeny of two elite North American varieties representing different germplasm groups. Theor Appl Genet 101(1–2):173–184

    Article  CAS  Google Scholar 

  • Mather DE, Tinker NA, LaBerge DE, Edney M, Jones BL, Rossnagel BG, Legge WG, Briggs KG, Irvine RB, Falk DE, Kasha KJ (1997) Regions of the genome that affect grain and malt quality in a North American two-row barley cross. Crop Sci 37(2):544–554

    Article  CAS  Google Scholar 

  • Matthies IE, Weise S, Roder MS (2009) Association of haplotype diversity in the α-amylase gene amy1 with malting quality parameters in barley. Mol Breed 23(1):139–152

    Article  CAS  Google Scholar 

  • Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Stein N, Ariyadasa R, Schulte D, Poursarebani N, Zhou RN, Steuernagel B, Mascher M, Scholz U, Shi BJ, Langridge P, Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Close TJ, Muehlbauer GJ, Hedley P, Liu H, Morris J, Waugh R, Frenkel Z, Korol A, Berges H, Graner A, Stein N, Steuernagel B, Taudien S, Groth M, Felder M, Platzer M, Brown JWS, Schulman A, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Taudien S, Sampath D, Swarbreck D, Scalabrin S, Zuccolo A, Vendramin V, Morgante M, Mayer KFX, Schulman A, Conso IBGS (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491(7426):711–716

    CAS  PubMed  Google Scholar 

  • Mccleary BV, Codd R (1989) Measurement of β-amylase in cereal flours and commercial enzyme preparations. J Cereal Sci 9(1):17–33

    Article  CAS  Google Scholar 

  • Mccleary BV, Sheehan H (1987) Measurement of cereal α-amylase: a new assay procedure. J Cereal Sci 6(3):237–251

    Article  CAS  Google Scholar 

  • Oziel A, Hayes PM, Chen FQ, Jones B (1996) Application of quantitative trait locus mapping to the development of winter-habit malting barley. Plant Breed 115(1):43–51

    Article  CAS  Google Scholar 

  • Pallotta MA, Asayama S, Reinheimer JM, Davies PA, Barr AR, Jefferies SP, Chalmers KJ, Lewis J, Collins HM, Roumeliotis S, Logue SJ, Coventry SJ, Lance RCM, Karakousis A, Lim P, Verbyla AP, Eckermann PJ (2003) Mapping and QTL analysis of the barley population Amagi Nijo × WI2585. Aust J Agric Res 54(11–12):1141–1144

    Article  CAS  Google Scholar 

  • Panozzo JF, Eckermann PJ, Mather DE, Moody DB, Black CK, Collins HM, Barr AR, Lim P, Cullis BR (2007) QTL analysis of malting quality traits in two barley populations. Aust J Agric Res 58(9):858–866

    Article  CAS  Google Scholar 

  • Potokina E, Druka A, Luo ZW, Wise R, Waugh R, Kearsey M (2008) Gene expression quantitative trait locus analysis of 16,000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. Plant J 53(1):90–101

    Article  CAS  PubMed  Google Scholar 

  • Ranford JC, Bryce JH, Morris PC (2002) PM19, a barley (Hordeum vulgare L.) gene encoding a putative plasma membrane protein, is expressed during embryo development and dormancy. J Exp Bot 53(366):147–148

    Article  CAS  PubMed  Google Scholar 

  • Schmalenbach I, Pillen K (2009) Detection and verification of malting quality QTLs using wild barley introgression lines. Theor Appl Genet 118(8):1411–1427

    Article  PubMed  PubMed Central  Google Scholar 

  • Shu K, Zhang HW, Wang SF, Chen ML, Wu YR, Tang SY, Liu CY, Feng YQ, Cao XF, Xie Q (2013) ABI4 regulates primary seed dormancy by regulating the biogenesis of abscisic acid and gibberellins in Arabidopsis. PLoS Genet 9(6):e1003577

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Szucs P, Blake VC, Bhat PR, Chao SM, Close TJ, Cuesta-Marcos A, Muehlbauer GJ, Ramsay L, Waugh R, Hayes PM (2009) An integrated resource for barley linkage map and malting quality QTL alignment. Plant Genome 2(2):134–140

    Article  CAS  Google Scholar 

  • Thomas WTB, Powell W, Swanston JS, Ellis RP, Chalmers KJ, Barua UM, Jack P, Lea V, Forster BP, Waugh R, Smith DB (1996) Quantitative trait loci for germination and malting quality characters in a spring barley cross. Crop Sci 36(2):265–273

    Article  Google Scholar 

  • van Ooijen JH (2004) MapQTL 5 software for the mapping quantitative trait loci in experimental populations. Plant Research International, Wageningen

    Google Scholar 

  • Varshney RK, Marcel TC, Ramsay L, Russell J, Roder MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theor Appl Genet 114(6):1091–1103

    Article  CAS  PubMed  Google Scholar 

  • Wenzl P, Li HB, Carling J, Zhou MX, Raman H, Paul E, Hearnden P, Maier C, Xia L, Caig V, Ovesna J, Cakir M, Poulsen D, Wang JP, Raman R, Smith KP, Muehlbauer GJ, Chalmers KJ, Kleinhofs A, Huttner E, Kilian A (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits. BMC Genom 7:206

    Article  Google Scholar 

  • Yang HA, Tao Y, Zheng ZQ, Zhang QS, Zhou GF, Sweetingham MW, Howieson JG, Li CD (2013) Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L. PLoS ONE 8(5):e64799

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoshigi N, Okada Y, Sahara H, Koshino S (1994) PCR cloning and sequencing of the β-amylase cDNA from barley. J Biochem Tokyo 115(1):47–51

    CAS  PubMed  Google Scholar 

  • Zhou T, Takashi I, Ryouichi K, Naohiko H, Makoto K, Takehiro H, Kazuhiro S (2012) Malting quality quantitative trait loci on a high-density map of Mikamo golden × Harrington cross in barley (Hordeum vulgare L.). Mol Breed 30(1):103–112

    Article  CAS  Google Scholar 

  • Zhou G, Zhang Q, X-q Zhang, Tan C, Li C (2015) Construction of high-density genetic map in barley through restriction-site associated DNA sequencing. PLoS ONE 10(7):e0133161

    Article  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgments

This work was supported by funding from Grains Research and Development Corporation (GRDC) of Australia (DAW00233), Department of Agriculture and Food Western Australia, and Western Australian State Agricultural Biotechnology Centre (SABC).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Chengdao Li.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOC 117 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhou, G., Panozzo, J., Zhang, Xq. et al. QTL mapping reveals genetic architectures of malting quality between Australian and Canadian malting barley (Hordeum vulgare L.). Mol Breeding 36, 70 (2016). https://doi.org/10.1007/s11032-016-0492-9

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1007/s11032-016-0492-9

Keywords

Navigation