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Plant genetic resources collections and associated information as a baseline resource for genetic diversity studies: an assessment of the IBPGR-supported collections

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Abstract

Studying temporal changes in genetic diversity depends upon the availability of comparable time series data. Plant genetic resource collections provide snapshots of the diversity that existed at the time of collecting and provide a baseline against which to compare subsequent observations. The International Board for Plant Genetic Resources conducted collecting missions in 136 countries mainly between 1975 and 1995, with the result that over 200,000 samples of a wide range of taxa were collected and distributed to genebanks around the world for long-term conservation and use. Twenty-seven percent of the collected samples were crop wild relatives and 61 % were landraces. Given their age, geographic and taxonomic scope, these collections have great potential value for establishing historical baselines for monitoring the status of conservation or the erosion of genetic diversity. This article reports on efforts to ‘chase down’ those samples and to confirm their conservation status and whether they are publicly available. For 35 % of the materials, we were able to recreate a unique link between original passport data and other collecting documentation (collecting sheets and reports) with extant accessions held in genebanks. This information enables a number of important uses, ranging from the identification of potential duplicates in genebanks and the assessment of effectiveness of ex situ conservation procedures to the re-collecting and assessing of genetic erosion and temporal variation in landraces and crop wild relatives.

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Notes

  1. Project website available at <http://www.baselineseedbank.org/> (accessed 11 March 2014).

  2. The International Board for Plant Genetic Resources became the International Plant Genetic Resources Institute (IPGRI) in 1991 and in 1994 IPGRI started to operate as an independent CGIAR centre and, since 2006, operates under the name Bioversity International.

  3. A collecting mission often took place in different countries and/or different time periods. Collecting missions were therefore subdivided in single collecting trips, each collecting trip identified by a single target country and a specific collecting period. See Thormann et al. (2012) for more detail.

  4. The Bioversity Collecting Database is available at <http://bioversity.github.io/geosite/> (last accessed 15 July 2014).

  5. These data can be verified at <http://eurisco.ecpgr.org/search/advanced_search.html> (last accessed 15 July 2014).

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Acknowledgments

The assessment of the Register of Base Collections and the Bioversity Collecting Database was supported by the CGIAR Research Program on Policies, Institutions and Markets, led by the International Food Policy Research Institute and by Bioversity International.

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Correspondence to I. Thormann.

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Thormann, I., Fiorino, E., Halewood, M. et al. Plant genetic resources collections and associated information as a baseline resource for genetic diversity studies: an assessment of the IBPGR-supported collections. Genet Resour Crop Evol 62, 1279–1293 (2015). https://doi.org/10.1007/s10722-015-0231-9

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