Abstract
With the advancement of several Puccinia genome sequencing projects, along with gene expression data and methods for predicting secreted proteins, it is now possible to predict many effector proteins from the cereal rusts. Biological assays that can be conducted in a relatively high throughput fashion are necessary to assign specific functions, such as avirulence. Biolistic delivery of potential effectors is limited by the need to examine individual cells and delivery by Agrobacterium generally also affects small numbers of cells in grasses. An approach that has had some success in dicots is the use of bacterial systems to deliver proteins by their type III secretion systems (TTSS). Several bacterial systems were thus tested for their suitability in delivering effectors to wheat. Pseudomonas syringae DC3000 caused hypersensitive reactions (HR) when infiltrated into all tested wheat lines but only some barley lines. A variant strain with multiple effectors deleted showed a reduced HR on wheat lines. Pseudomonas fluorescens with an engineered TTSS system showed no HR in wheat lines but was able to deliver bacterial effectors AvrRpm1 and AvrRpt2 and the fungal toxin ToxA. Delivery of the effectors by P. fluorescens could be detected by HR or by staining for presence of hydrogen peroxide or callose deposits. The bacterial systems thus showed good potential for their ability to deliver foreign proteins into wheat cells.
Similar content being viewed by others
References
Anderson DM, Fouts DE, Collmer A, Schneewind O (1999) Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals. Proc Natl Acad Sci USA 96:12839–12843
Ballance GM, Lamari L, Kowatsch R, and Bernier CC (1996) Cloning, expression and occurrence of the gene encoding the Ptr necrosis toxin from Pyrenophora tritici-repentis. Mol Plant Pathol http://www.bspp.org.uk/mppol/1996/1209ballance/
Baum JA, Bogaert T, Clinton W, Heck GR, Feldmann P, Ilagan O, Johnson S, Plaetinck G, Munyikwa T, Pleau M, Vaughn T, Roberts J (2007) Control of coleopteran insect pests through RNA interference. Nat Biotechnol 25:1322–1326
Block A, Li G, Fu AQ, Alfano JR (2008) Phytopathogen type III effector weaponry and their plant targets. Curr Opin Plant Biol 11:396–403
Brueggeman R, Rostoks N, Kudrna D, Kilian A, Han F, Chen J, Druka A, Steffenson B, Kleinhofs A (2002) The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases. Proc Natl Acad Sci USA 99:9328–9333
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D, Whitelaw C, Kilian A, Han F, Sun Y, Gill K, Steffenson B, Kleinhofs A (2008) The stem rust resistance gene Rpg5 encodes a novel protein with nucleotide binding site, leucine-rich and protein kinase domains. Proc Natl Acad Sci USA 105:14970–14975
Catanzariti A-M, Dodds PN, Lawrence GJ, Ayliffe MA, Ellis JG (2006) Haustorially expressed secreted proteins from flax rust are highly enriched for avirulence elicitors. Plant Cell 18:243–256
Chang JH, Urbach JM, Law TF, Arnold LW, Hu A, Gombar S, Grant SR, Ausubel FM, Dangl JL (2005) A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae. Proc Natl Acad Sci USA 102:2549–2554
Chen XM, Line RF (1992) Inheritance of stripe rust resistance in wheat cultivars used to differentiate races of Puccinia striiformis in North America. Phytopathology 82:633–637
Chen XM, Line RF, Leung H (1995) Virulence and polymorphic DNA relationships of Puccinia striiformis f. sp. hordei to other rusts. Phytopathology 85:1335–1342
Cloutier S, McCallum BD, Loutre C, Banks TW, Wicker T, Feuillet C, Keller B, Jordan MC (2007) Leaf rust resistance gene Lr1, isolated from bread wheat (Triticum aestivum L.) is a member of the large psr567 gene family. Plant Mol Biol 65:93–106
Collins N, Drake J, Ayliffe M, Sun Q, Ellis J, Hulbert S, Pryor T (1999) Molecular characterization of the maize Rp1-D rust resistance haplotype and its mutants. Plant Cell 11:1365–1376
Currier H, Strugger S (1956) Aniline blue and fluorescence microscopy of callose in bulb scales of Allium cepa L. Protoplasma 45:552–559
DebRoy S, Thilmony R, Kwack YB, Nomura K, He SY (2004) A family of conserved bacterial effectors inhibits salicylic acid-mediated basal immunity and promotes disease necrosis in plants. Proc Natl Acad Sci U S A 101:9927–9932
Dodds PN, Lawrence GJ, Catanzariti A-M, Ayliffe M, Ellis J (2004) The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells. Plant Cell 16:755–768
Dodds PN, Lawrence GJ, Catanzariti A-M, Teh T, Ching I, Wang A, Ayliffe MA, Kobe B, Ellis JG (2006) Direct protein interaction underlies gene-for-gene specificity and co-evolution of the flax resistance genes and flax rust avirulence genes. Proc Natl Acad Sci USA 103:8888–8893
Ellis JG, Dodds PN, Lawrence GJ (2007) Flax rust resistance gene specificity is based on direct resistance-avirulence protein interactions. Annu Rev Phytopathol 45:289–306
Faris JD, Friesen TL (2009) Reevaluation of a tetraploid wheat population indicates that the Tsn1-ToxA interaction is the only factor governing Stagonospora nodorum blotch susceptibility. Phytopathology 99:906–912
Feuillet C, Travella S, Stein N, Albar L, Nublat A, Keller B (2003) Map-based isolation of the leaf rust disease resistance gene Lr10 from the hexaploid wheat (Triticum aestivum L.) genome. Proc Natl Acad Sci USA 100:15253–15258
Frizzi A, Huang S (2010) Tapping the silencing pathways for plant biotechnology. Plant Biotech J 8:655–677
Guttman DS, Greenberg JT (2001) Functional analysis of the type III effectors AvrRpt2 and AvrRpm1 of Pseudomonas syringae with the use of a single-copy genomic integration system. Mol Plant Microbe Interact 14:145–155
Hahn M, Mendgen K (1992) Isolation by ConA binding of haustoria from different rust fungi and comparison of their surface qualities. Protoplasma 170:95–103
Ham JH, Bauer DW, Fouts DE, Collmer A (1998) A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr proteins in culture. Proc Natl Acad Sci USA 95:10206–10211
Hogenhout SA, Van der Hoorn RAL, Terauchi R, Kamoun S (2009) Emerging concepts in effector biology of plant-associated organisms. Mol Plant Microbe Interact 22:115–122
Huang L, Brooks SA, Li W, Fellers JP, Trick HN, Gill BS (2003) Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat. Genetics 164:655–664
Huang G, Allen R, Davis EL, Baum TJ, Hussey RS (2006) Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proc Natl Acad Sci USA 103:14302–14306
Jin Y, Szabo LJ, Carson M (2010) Century-old mystery of Puccinia striiformis life history solved with the identification of Berberis as an alternate host. Phytopathology 100:432–435
Kvitko BH, Park DH, Vela′squez AC, Wei C-F, Russell AB et al (2009) Deletions in the repertoire of Pseudomonas syringae pv. tomato DC3000 Type III secretion effector genes reveal functional overlap among effectors. PLoS Pathog 5(4):e1000388
Lawrence GJ, Dodds PN, Ellis JG (2010) Transformation of the flax rust fungus, Melampsora lini: selection via silencing of an avirulence gene. Plant J 61:364–369
Manning VA, Ciuffetti LM (2005) Localization of Ptr ToxA produced by Pyrenophora tritici-repentis reveals protein import into wheat mesophyll cells. Plant Cell 17:3203–3212
Mudgett MB, Staskawicz BJ (1999) Characterization of the Pseudomonas syringae pv. tomato AvrRpt2 protein: demonstration of secretion and processing during bacterial pathogenesis. Mol Microbiol 32:927–941
Rentel MC, Leonelli L, Dahlbeck D, Zhao B, Staskawicz BJ (2008) Recognition of the Hyaloperonospora parasitica effector ATR13 triggers resistance against oomycete, bacterial, and viral pathogens. Proc Natl Acad Sci USA 105:1091–1096
Scofield SR, Huang L, Brandt AS, Gill BS (2005) Development of a virus induced gene-silencing system for hexaploid wheat and its use in functional analysis of the Lr21-mediated leaf rust resistance pathway. Plant Physiol 138:2165–2173
Sindhu AS, Maier TR, Mitchum MG, Hussey RS, Davis EL, Baum TJ (2009) Effective and specific in planta RNAi in cyst nematodes: expression interference of four parasitism genes reduces parasitic success. J Exp Bot 60:315–324
Sohn KH, Lei R, Nemri A, Jones JD (2007) The downy mildew effector proteins ATR1 and ATR13 promote disease susceptibility in Arabidopsis thaliana. Plant Cell 19:4077–4090
Thomas WJ, Thireault CA, Kimbrel JA, Chang JH (2009) Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0–1. Plant J 60:919–928
Thordal-Christensen H, Zhang Z, Wei Y, Collinge DB (1997) Subcellular localization of H2O2 in plants: H2O2 accumulation in papillae and hypersensitive response during the barley-powdery mildew interaction. Plant J 11:1187–1194
Tuori RP, Wolpert TJ, Ciuffetti LM (2000) Heterologous expression of functional Ptr ToxA. Mol Plant Microbe Interact 13:456–464
Webb CA, Richter TE, Collins NC, Nicolas M, Trick HN, Pryor T, Hulbert SH (2003) Genetic and molecular characterizatio of the maize rp3 rust resistance locus. Genetics 169:381–394
Wellings C, Kandel K (2004) Pathogen dynamics associated with historic stripe (yellow) rust epidemics in Australia in 2002 and 2003. In: Proceedings of 11th In Cereal Rusts and Powdery Mildews Conf, Norwich, England, 22–27 August 2004, Cereal Rusts and Powdery Mildews Bulletin, Abstr A2.74
Yadav BC, Veluthambi K, Subramaniam K (2006) Host-generated double stranded RNA induces RNAi in plant-parasitic nematodes and protects the host from infection. Mol Biochm Parasitol 148:219–222
Yin C, Chen X, Wang X, Han Q, Kang Z, Hulbert SH (2009) Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. tritici. BMC Genom 10:626
Zambino PJ, Kubelik AR, Szabo LJ (2000) Gene action and linkage of avirulence genes to DNA markers in the rust fungus Puccinia graminis. Phytopathology 90:819–826
Zhao B, Lin X, Poland J, Trick H, Leach J, Hulbert SH (2005) A maize resistance gene functions against bacterial streak disease in rice. Proc Natl Acad Sci USA 102:15383–15388
Zhou H, Li S, Deng Z, Wang X, Chen T, Zhang J, Chen S, Ling H, Zhang A, Wang D, Zhang X (2007) Molecular analysis of three new receptor-like kinase genes from hexaploid wheat and evidence for their participation in the wheat hypersensitive response to stripe rust fungus infection. Plant J 52:420–434
Acknowledgments
This work was supported in part by National Institute of Food and Agriculture Grant No. 2010-65108-20568. We are grateful to Timothy Friesen for providing seeds of Langdon and the ToxA-insensitive mutant and Xianmin Chen for providing seeds of differential barley cultivars and differential wheat cultivars. Alan Collmer kindly provided P. syringae strains DC3000 and CUCPB5500 and the Pseudomonas fluorescens strains were provided by Jeff Chang. The pEDV6 and pEDV3 vectors were a gift from Jonathan Jones. We are also grateful to Zhaohui Liu, Justin Faris, and Timothy Friesen for supplying a clone of the ToxA gene and consultation on its use.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Yin, C., Hulbert, S. Prospects for functional analysis of effectors from cereal rust fungi. Euphytica 179, 57–67 (2011). https://doi.org/10.1007/s10681-010-0285-x
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10681-010-0285-x