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Evolutionary history of Ash Meadows pupfish (genus Cyprinodon) populations inferred using microsatellite markers

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Abstract

Pupfish (genus Cyprinodon) persist in a series of isolated warm springs in Death Valley. Here we describe an analysis of microsatellite variation at six loci for nine populations encompassing three distinct taxa. Levels of genetic variation within populations and the pattern of relatedness among populations are best explained by spring elevation. Springs at higher elevations harbored less variation and exhibited greater among population divergence than lower elevation springs. This pattern reflects regional paleohydrological history showing a declining water table over the last 20,000 years. Continuing decline of the water table, a trend accelerated by local ground water mining, portends a future of increasing isolation and declining within-population variation.

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References

  • Andersen ME, Deacon JE (2001) Population size of Devils Hole pupfish (Cyprinodon diabolis )correlates with water level. COPEIA, 2001, 224–228.

    Google Scholar 

  • Brohede J, Primmer CR, Moller A, Ellegren H (2002) Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci. Nucleic Acids Res., 30, 1997–2003.

    Google Scholar 

  • Brown JH, Lomolino MV (2001) Biogeography. McGraw-Hill, NY.

    Google Scholar 

  • Burg TM, Wilcox JL, Martin AP (2002) Polymorphic microsatellite loci from pupfish (genus Cyprinodon ). Cons. Gene., 3, 197–204.

    Google Scholar 

  • Burnham KP, Anderson DR (2002) Model selection and inference. A practical information-theoretic approach. Vers. 2. Springer Verlag, New York, NY.

    Google Scholar 

  • Chernoff B (1985) Population dynamics of the Devil 's Hole pupfish. Env. Biol. Fish, 13, 130–147.

    Google Scholar 

  • Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001–2014.

    Google Scholar 

  • Deacon J, Deacon-Williams C (1991) Ash Meadows and the Legacy of the Devil 's Hole pupfish. University of Arizona Press, Tucson.

    Google Scholar 

  • Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB (1994) Mutational processes of simple-sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA, 91, 3166–3170.

    Google Scholar 

  • Duvernell D, Turner BR (1998) Evolutionary genetics of Death Valley pupfish populations:mitochondrial DNA sequence variation and population structure. Mol. Ecol., 7, 279–288.

    Google Scholar 

  • Duvernell D, Turner BR (1999) Variation and divergence of Death Valley pupfish populations at retrotransposon-defined loci. Mol. Biol. Evol., 16, 363–371.

    Google Scholar 

  • Felsenstein J (1999) PHYLIP. Department of Genetics, University of Washington.

  • Garza JC, Williamson EG (2001) Detection of reduction in population size using data from microsatellite loci. Mol. Ecol., 10, 305–318.

    Google Scholar 

  • Guo S, Thompson E (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48, 361–372.

    Google Scholar 

  • Hedrick PW (1999) Perspective:highly variable loci and their interpretation in evolution and conservation. Evolution 53, 313–318.

    Google Scholar 

  • Hershler R, Sada DW (2002) Biogeography of Great Basin aquatic snails of the genus Pyrgulopsis. Smiths. Contri. Earth Sci. 33, 255–276.

    Google Scholar 

  • Hubbs CL, Miller RR (1948) The zoological evidence:correlation between fish distribution and hydrographic history in the desert basins of western United States. The Great Basin, with emphasis on glacial and postglacial times. Bull. Univ. Utah, 10, 17–166.

    Google Scholar 

  • Ibbeken H, Warnke D (2000) The Hanaupah-Fan shoreline deposit at Tule Spring, a gravelly shoreline deposit of Pleistocene Lake Manly, Death Valley, California, USA. J. Paleolimno., 23, 439–447.

    Google Scholar 

  • James CJ (1969) Aspects of the ecology of the Devil 's Hole pupfish, Cyprinodon diabolis Wales. Masters Thesis. University of Nevada, Las Vegas.

    Google Scholar 

  • Jones AG, Stockwell CA, Walker D, Avise JC (1998) The molecular basis of a microsatellite null allele from the white sands pupfish. J. Heredity, 89, 339–342.

    Google Scholar 

  • Lowenstein TK (2002) Pleistocene lakes and paleoclimates (0–200 Ka)in Death Valley, California. Smiths. Contri. Earth Sci., 33, 109–120.

    Google Scholar 

  • Lowenstein TK, Li JR, Brown C, Roberts SM, Ku TL, Luo SD, Yang WB (1999) 200 ky paleoclimate record from Death Valley salt core. Geology, 27, 3–6.

    Google Scholar 

  • Miller RR (1948) The cyprinodont fishes of the Death Valley system of eastern California and southwestern Nevada. University of Michigan Press, Ann Arbor.

    Google Scholar 

  • Miller RR (1961) Man and the changing fish fauna of the American Southwest. Pap. Mich. Acad. Sci., 46, 365–404.

    Google Scholar 

  • Moreo MT, Halford KJ, La Camera RJ, Lacniak RJ (2003) Estimated ground water with drawls from the Death Valley regional flow system, Nevada and California, 1913–1998. USGS Water Resources Investigations Report 03–4245, Carson City, Nevada.

  • Polhemus DA, Polhemus JT (2002) Basins and ranges:the biogeography of aquatic true bugs (Insecta:Heteroptera)in the Great Basin. Smiths. Contri. Earth Sci., 33, 235–254.

    Google Scholar 

  • Reheis M(1999) Highest pluvial-lake shorelines and Pleistocene climate of the western Great Basin. Quat. Res., 52, 196–205.

    Google Scholar 

  • Reheis M, Sarna-Wojcicki AM, Reynolds RL, Repennning CA, Mifflin MD (2002) Pliocene to middle Pleistocene lakes in the western Great Basin:ages and connections. Smiths. Contri. Earth Sci., 33, 53–108.

    Google Scholar 

  • Riggs AC, Carr WJ, Kolesar PT, Hoffman RJ (1994) Tectonic speleogenesis of Devil 's Hole, Nevada, and implications for hydrogeology and the development of long, continuous paleoenvironmental records. Quat. Res., 42, 241–254.

    Google Scholar 

  • Schneider S, Roessli D, Excoffier L (2000) Arlequin Version 2. 00:A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.

    Google Scholar 

  • Shepard WD (1992) Riffle beetles (Coleoptera, Elmidae)of Death Valley National Monument, California. Great Bas. Nat., 52, 378–381.

    Google Scholar 

  • Slatkin M (1995a)Measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457–462.

    Google Scholar 

  • Slatkin M (1995b)Hitchhiking and associative overdominance at a microsatellite locus. Mol Biol Evol, 12, 473–480.

    Google Scholar 

  • Smith GR, Dowling TE, Gobalet KW, Lugaski T, Siozawa DK, Evans RP (2002) Biogeography and timing of evolutionary events among the Great Basin fishes. Smiths. Contri. Earth Sci., 33, 175–234.

    Google Scholar 

  • Soltz D, Naimon R (1978) The Natural History of Native Fishes in the Death Valley System. Natural History Museum of Los Angeles County, Los Angeles.

    Google Scholar 

  • Szabo BJ, Kolesar PT, Riggs AC, Winograd IJ, Ludwig KR (1994) Paleoclimatic inferences from a 120, 000–year calcite record of water Table fluctuation in Brown 's room of Devil 's Hole, Nevada. Quat. Res., 41, 59–69.

    Google Scholar 

  • Tanko DJ, Glancy PA (2001) Flooding in the Amargosa River drainage basins, February 23–24, 1998, Southern Nevada and Eastern California, including the Nevada Test Site. USGS Fact Sheet 036–01.

  • Verheyen E, Ruber L, Snoeks J, Meyer A (1996) Mitochondrialphylogeography of rock-dwelling cichlid fishes reveals evolutionary influence of historical lake level fluctuations of Lake Tanganyika, Africa. Philos. Trans. R. Soc. Lond. B. Biol. Sci., 351, 797–805.

    Google Scholar 

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Martin, A.P., Wilcox, J.L. Evolutionary history of Ash Meadows pupfish (genus Cyprinodon) populations inferred using microsatellite markers. Conservation Genetics 5, 769–782 (2004). https://doi.org/10.1007/s10592-004-1978-2

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