Skip to main content

Advertisement

Log in

Biological individuality: the case of biofilms

  • Published:
Biology & Philosophy Aims and scope Submit manuscript

Abstract

This paper examines David Hull’s and Peter Godfrey-Smith’s accounts of biological individuality using the case of biofilms. Biofilms fail standard criteria for individuality, such as having reproductive bottlenecks and forming parent-offspring lineages. Nevertheless, biofilms are good candidates for individuals. The nature of biofilms shows that Godfrey-Smith’s account of individuality, with its reliance on reproduction, is too restrictive. Hull’s interactor notion of individuality better captures biofilms, and we argue that it offers a better account of biological individuality. However, Hull’s notion of interactor needs more precision. We suggest some ways to make Hull’s notion of interactor and his account of individuality more precise. Generally, we maintain that biofilms are a good test case for theories of individuality, and a careful examination of biofilms furthers our understanding of biological individuality.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

Notes

  1. Though we often refer to the members of a biofilm as bacteria or bacterial cells, it should be noted that some biofilms consist of non bacterial microorganisms.

  2. Here our work overlaps with the work of Dupré and O’Malley (2009). They suggest that “life…is typically found at the collaborate intersections of many lineages.” Biofilms are an excellent example of this.

  3. Here are two philosophical tools that help distinguish individuals from non-individuals. Reichenbach’s notion of screening off helps determine whether an outcome is caused by an interaction among the parts of an individual or is the result of the aggregated effect of independent entities. If the interaction of entities screens off the aggregated effect of independent entities, then an outcome is due to interaction within an individual. See Salmon (1978, 1984) and Brandon (1990) for discussions of screening off. Another useful tool for distinguishing outcomes due to aggregation versus outcomes due to interaction is Salmon’s (1978, 1984) mark transmission criterion. Using Salmon’s car and shadow example, if a car is dented, that car will remain dented until it is fixed. The dent is a mark transmitted by the car, and the car is an individual or a process. If the shadow of the car cast on a road’s railing changes because one segment of the railing is broken, that change (i.e., mark) is not transmitted to future instances of the shadow when the railing is not broken. Pseudo-processes do not transmit marks. The car’s shadow over time is an aggregate of the car blocking the sun at different moments. It is a pseudo-process.

  4. The idea that individuation can only occur when we specify the type of individual being individuated is a central tenet of the sortal view of identity (Wiggins 2001).

References

  • Armstrong D (1980) Identity through time. In: Van Inwagen P (ed) Time and cause. D Reidel, Dordrecht, pp 67–78

    Chapter  Google Scholar 

  • Barraud N, Hassett D, Hwang S, Rice S, Kjelleberg S, Webb J (2006) Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa. J Bacteriol 188:7344–7353

    Article  Google Scholar 

  • Bracco E, Pergolizzi B, Peracino B, Ponte E, Balbo A, Mai A, Adriano C, Bozzaro S (2000) Cell signaling and adhesion in phagocytosis and early development of Dictyostelium. Int J Dev Biol 4:733–742

    Google Scholar 

  • Brandon R (1990) Adaptation and the environment. Princeton University Press, Princeton

    Google Scholar 

  • Clarke E (2010) The problem of biological individuality. Biol Theor 5:312–325

    Article  Google Scholar 

  • Costerton J (2007) The biofilm primer. Springer, Berlin

    Book  Google Scholar 

  • Davies J, Davies D (2010) Origins and evolution of antibiotic resistance. Microbiol Mol Biol Rev 74:417–433

    Article  Google Scholar 

  • Davies D, Parsek M, Pearson J, Iglewski B, Costerton J, Greenberg E (1998) The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280:295–298

    Article  Google Scholar 

  • Dawkins R (1982) The extended phenotype. Oxford University Press, Oxford

    Google Scholar 

  • Dupré M, O’Malley M (2009) Varieties of living things: life at the intersection of lineage and metabolism. Philos Theor Biol. http://quod.lib.umich.edu/p/ptb/6959004.0001.003?rgn=main;view=fulltext

  • Ehrlich G, Ahmed A, Earl J, Hiller N, Costerton J, Stoodley P, Post C, DeMeo P, Hu F (2010) The distributed genome hypothesis as a rubric for understanding evolution in situ during chronic bacterial biofilm infectious processes. FEMS Immunol Med Microbiol 59:269–279

    Google Scholar 

  • Elias S, Banin E (2012) Multi-species biofilms: living with friendly neighbors. FEMS Microbiol Rev 6:990–1004

    Google Scholar 

  • Flemming H, Wingender J (2010) The biofilm matrix. Nat Rev Microbiol 8:623–633

    Google Scholar 

  • Ghigo J (2001) Natural conjugative plasmids induce bacterial biofilm development. Nature 412:442–445

    Article  Google Scholar 

  • Godfrey-Smith P (2009) Darwinian populations and natural selection. Oxford University Press, Oxford

    Google Scholar 

  • Godfrey-Smith P (2011a) Agents and acacias: replies to Dennett, Sterelny, and Queller. Biol Philos 26:501–515

    Article  Google Scholar 

  • Godfrey-Smith P (2011b) Darwinian populations and transitions in individuality. In: Calcott B, Sterelny K (eds) The major transitions in evolution revisited. The MIT Press, Cambridge, pp 65–81

    Google Scholar 

  • Godfrey-Smith P (2011c) The evolution of the individual. Lakatos Award Lecture, LSE, June 2011. http://www.petergodfreysmith.com/Evo_Ind_PGS_Lakatos_2011_Web.pdf

  • Hall-Stoodley L, Costerton J, Stoodley P (2004) Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol 2:95–108

    Article  Google Scholar 

  • Hojo K, Nagaoka S, Ohshima T, Maeda N (2009) Bacterial interactions in dental biofilm development. Crit Rev Oral Biol Med 11:982–990

    Google Scholar 

  • Hull D (1976) Are species individuals? Syst Zool 25:174–191

    Article  Google Scholar 

  • Hull D (1978) A matter of individuality. Philos Sci 45:335–360

    Article  Google Scholar 

  • Hull D (1980) Individuality and selection. Ann Rev Eco Syst 11:311–332

    Article  Google Scholar 

  • Kolenbrander P, Andersen R, Blehert D, England P, Foster J, Palmer R (2002) Communication among oral bacteria. Microbiol Mol Biol Rev 66:486–505

    Article  Google Scholar 

  • Kolenbrander P, Palmer R, Periasamy S, Jakubovics N (2010) Oral multispecies biofilm development and the key role of cell-cell distance. Nat Rev Microbiol 8:471–480

    Article  Google Scholar 

  • Langille M, Meehan C, Beiko R (2012) Human microbiome: a genetic bazaar for microbes? Curr Biol 22:R20–R22

    Article  Google Scholar 

  • Lewontin R (1970) The units of selection. Ann Rev Eco Syst 1:1–18

    Article  Google Scholar 

  • Nikoh N, McCutcheon J, Kudo T, Miyagishima S-y, Moran N, Nakabachiet A (2010) Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host. PLoS Genet. doi:10.1371/journal.pgen.1000827

  • Palmer R, Kazmerzak K, Hansen M, Kolenbrander P (2001) Mutualism versus independence: strategies of mixed-species oral biofilms in vitro using saliva as the sole nutrient source. Infect Immun 69:5794–5804

    Article  Google Scholar 

  • Rickard A, Gilbert P, High N, Kolenbrander P, Handley P (2003) Bacterial coaggregation: an integral process in the development of multi-species biofilms. Trends Microbiol 11:94–100

    Article  Google Scholar 

  • Sakuragi Y, Kolter R (2007) Quorum-sensing regulation of the biofilm matrix genes (pel) of Pseudomonas aeruginosa. J Bacteriol 189:5383–5386

    Article  Google Scholar 

  • Salmon W (1978) Why ask, ‘Why?’? An enquiry concerning scientific explanation. Proc Address Am Philos Assoc 51:683–705

    Article  Google Scholar 

  • Salmon W (1984) Scientific explanation and the causal structure of the world. Princeton University Press, Princeton

    Google Scholar 

  • Shoemaker S (1979) Identity, properties, and causality. In: French P, Uehling T, Wettstein H (eds) Midwestern studies in philosophy VI. University of Minnesota Press, Minneapolis, pp 321–342

    Google Scholar 

  • Sterelny K (2011) Darwinian spaces: Peter Godfrey-Smith on selection and evolution. Biol Philos 26:489–500

    Article  Google Scholar 

  • Stewart P, Franklin M (2008) Physiological heterogeneity in biofilms. Nat Rev Microbiol 6:199–210

    Article  Google Scholar 

  • Thomas C, Nielsen K (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat Rev Microbiol 3:711–721

    Article  Google Scholar 

  • Tribble G, Rigney T, Dao D, Wong C, Kerr J, Taylor B, Pacha S, Kaplan H (2012) Natural competence is a major mechanism for horizontal DNA transfer in the oral pathogen Porphyromonas gingivalis. MBio. doi:10.1128/mBio.00231-11

  • Wang B, Chi B, Kuramitsu H (2002) Genetic exchange between Treponema denticola and Streptococcus gordonii in biofilms. Oral Microbiol Immunol 17:108–112

    Article  Google Scholar 

  • Wiggins D (2001) Sameness and substance renewed. Cambridge University Press, Cambridge

    Book  Google Scholar 

Download references

Acknowledgments

We thank Matt Haber, Maureen O’Malley, Peter Godfrey-Smith, and three referees for this journal for their helpful suggestions. Thanks to Ford Doolittle and Conor Meehan for helping us learn about biofilms and microbial consortia. We also thank the participants at the Individuals Across the Sciences conference (Paris 2012) for their feedback and stimulating discussion. The Canadian Institutes of Health Research and the Social Sciences and Humanities Research Council of Canada provided financial support for this research.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Marc Ereshefsky.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ereshefsky, M., Pedroso, M. Biological individuality: the case of biofilms. Biol Philos 28, 331–349 (2013). https://doi.org/10.1007/s10539-012-9340-4

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10539-012-9340-4

Keywords

Navigation