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Different target genes and chimeric-gene hairpin structures affect virus resistance mediated by RNA silencing in transgenic tobacco

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Biologia Plantarum

Abstract

Two types of hairpin RNA (hpRNA) constructions were designed using a chimeric gene formed from two genes, the coat protein (CP) gene or the silencing suppressor gene, from the Cucumber mosaic virus (CMV) and the Potato virus Y (PVYN), respectively; one type generated a single hairpin structure, whereas the other formed a two-hairpin structure. Four constructs, pDCPSH (double CP gene fragments, single hairpin), pDCPDH (double CP gene fragments, double hairpins), pHC2bSH (two silencing suppressor gene fragments, single hairpin), and pHC2bDH (two silencing suppressor gene fragments, double hairpins), were individually introduced into tobacco plants. A transcript analysis demonstrates that the small interference RNA (siRNA) processing efficiency was greater with the double-hairpin construct than with the single-hairpin construct, although the expression of their target genes were similar. A viral resistance assay shows that the transgenic tobacco plants effectively resisted a mixed infection of CMV and Potato virus Y (PVYN) and that pDCPDH exhibited the highest silencing efficiency. The accumulation of siRNA in the inoculated transgenic plants expressing different hairpin structures was similar. A genetic analysis reveals that viral resistance in the transgenic plants was stably inherited from the T0 to T1 generation. A transcript analysis and a viral resistance assay indicate that the double-hairpin structure of the same target sequences tended to produce more siRNA before the virus inoculation and thus strengthened RNA-mediated viral resistance.

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Abbreviations

CMV:

Cucumber mosaic virus

CP:

coat protein

hpRNA:

hairpin RNA

PVY:

Potato virus Y

siRNA:

small interference RNA

References

  • Audy, P., Palukaitis, P., Slack, S.A., Zaitlin, M.: Replicasemediated resistance to potato virus Y in transgenic tobacco plants. — Mol. Plant-Microbe. Interact. 7:15–22, 1994.

    Article  CAS  PubMed  Google Scholar 

  • Arif, M., Azhar, U., Arshad, M., Zafar, Y., Mansoor, S., Asad, S.: Engineering broad-spectrum resistance against RNA viruses in potato. — Transgenic. Res. 2:303–11, 2012.

    Article  Google Scholar 

  • Boucher, E., Lohuis, D., Van Poppel, P.M., Geerts-Dimitriadou, C., Goldbach, R., Prins, M.: Multiple virus resistance at a high frequency using a single transgene construct. — J. Gen.Virol. 87: 3697–3701, 2006.

    Article  Google Scholar 

  • Chen, C., Ridzon, D.A., Broomer, A.J., Zhou, Z., Lee, D.H., Nguyen, J.T., Barbisin, M., Xu, N.L., Mahuvakar, V.R., Andersen, M.R., Lao, K.Q., Livak, K.J., Guegler, K.J.: Real-time quantification of microRNAs by stem-loop RTPCR. — Nucl. Acids Res. 33(Suppl.): e179, 2005.

    Article  PubMed Central  PubMed  Google Scholar 

  • Chen, X.M., Liu, J., Li Xu., Jiang, F., Xie, X.Y., Zhu, C.X., Wen, F.J.: Inhibiting virus infection by RNA interference of the eight functional genes of the Potato Virus Y genome. — J. Phytopathol. 158: 776–784, 2010.

    Article  CAS  Google Scholar 

  • Duan, C.G., Wang, C.H., Fang, R.X., Guo, H.S.: Artificial microRNAs highly accessible to targets confer efficient virus resistance in plants. — J. Virol. 82: 11084–11095, 2008.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • English, J.J., Mueller, E. and Baulcombe, D.C.: Suppression of virus accumulation in transgenic plants exhibiting silencing of nuclear gene. — Plant Cell 8: 179–188, 1996.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Guo, H.S., López-Moya, J.J., García, J.A.: Mitotic stability of infection-induced resistance to Plum Pox Potyvirus associated with transgene silencing and DNA methylation. — Mol. Plant-Microbe. Interact. 12: 103–111, 1999.

    Article  CAS  PubMed  Google Scholar 

  • Guo, X.Q., Liu, S.E., Zhu, C.X., Song, Y.Z., Meng, X.B., Zheng, C.C., Wen, F.J.: RNA mediated viral resistance against Potato virus Y (PVY) in transgenic tobacco plants. — Acta. Phytopathol. Sin. 31: 349–356, 2001 [In Chinese].

    Google Scholar 

  • Hammond, S.M., Bernstein, E., Beach, D., Hannon, G.J.: An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells. — Nature 404: 293–296, 2000.

    Article  CAS  PubMed  Google Scholar 

  • Hannon, G.J.: RNA interference. — Nature 418: 244–251, 2002.

    Article  CAS  PubMed  Google Scholar 

  • Horsch, R.B., Fry, J.E., Hoffman, N.L., Eichholz, D., Rogers, S.G., Fraley, R.T.: A simple and general method for transforming genes into plants. — Science 227: 1229–1231, 1985.

    Article  CAS  Google Scholar 

  • Huang, J., Ge, X., Sun, M.: Modified CTAB protocol using a silica matrix for isolation of plant genomic DNA. — Biotechnique 28: 432–434, 2000.

    Google Scholar 

  • Jan, F.J., Fagoaga, C., Pang, S.Z., Gonsalves, D.: A single chimeric transgene derived from two distinct viruses confers multi-virus resistance in transgenic plants through homology-dependent gene silencing. — J. gen. Virol. 81: 2103–2109, 2000.

    CAS  PubMed  Google Scholar 

  • Khvorova, A., Reynolds, A., Jayasena, S.D.: Functional siRNAs and miRNAs exhibit strand bias. — Cell 115: 209–216, 2003.

    Article  CAS  PubMed  Google Scholar 

  • Kotlizky, G., Katz, A., Van Der Laak, J., Boyko, V., Lapidot, M., Beachy, R.N., Heinlein, M., Epel, B.L.: A disfunctional movement protein of Tobacco mosaic virus interferes with targeting of wild-type movement protein to microtubules. — Mol. Plant-Microbe. Interact. 14:895–904, 2001.

    Article  CAS  PubMed  Google Scholar 

  • Kung, Y.J., Bau, H.J., Wu, Y.L., Huang, C.H., Chen, T.M., Yeh, S.D.: Generation of transgenic papaya with double resistance to Papaya ringspot virus and Papaya leafdistortion mosaic virus. — Phytopathology 99: 1312–1320, 2009.

    Article  CAS  PubMed  Google Scholar 

  • Lin, C.Y., Ku, H.M., Tsai, W.S., Jan, F.J.: Resistance to a DNA and a RNA virus in transgenic plants by using a single chimeric transgene construct. — Transgenic. Res. 20: 261–270, 2011.

    Article  CAS  PubMed  Google Scholar 

  • Mallory, A.C., Reinhart, B.J., Bartel, D., Vance, V.B., Bowman, M.H.: From the cover: a viral suppressor of RNA silencing differentially regulates the accumulation of short interfering RNAs and micro-RNAs in tobacco. — Proc. nat. Acad. Sci. USA 99: 15228–15233, 2002.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Molnár, A., Csorba, T., Lakatos, L., Várallyay, E., Lacomme, C., Burgyán, J.: Plant virus-derived small interfering RNAs originate predominantly from highly structured singlestranded viral RNAs. — J. Virol. 79: 7812–7818, 2005.

    Article  PubMed Central  PubMed  Google Scholar 

  • Overhoff, M., Alken, M., Far, R.K., Lemaitre, M., Lebleu, B., Sczakiel, G., Robbins, I.: Local RNA target structure influences siRNA efficacy: a systematic global analysis. — J. mol. Biol. 348: 871–881, 2005.

    Article  CAS  PubMed  Google Scholar 

  • Praveen, S., Mangrauthia, S.K., Singh, P., Mishra, A.K.: Behavior of RNAi suppressor protein 2b of Cucumber mosaic virus in planta in presence and absence of virus. — Virus Genes 37: 96–102, 2008.

    Article  CAS  PubMed  Google Scholar 

  • Prins, M., Laimer, M., Noris, E., Schubert, J., Wassenegger, M., Tepfer, M.: Strategies for antiviral resistance in transgenic plants. — Mol. Plant. Pathol. 9: 73–83, 2008.

    CAS  PubMed  Google Scholar 

  • Qi, X., Ba, F.S., Xie, Z.: Small RNA deep sequencing reveals role for Arabidopsis thaliana RNA-dependent RNA polymerases in viral siRNA biogenesis. — PloS. One 4: e4971, 2009.

    Article  PubMed Central  PubMed  Google Scholar 

  • Schwarz, D.S., Hutvágner, G., Du, T.T., Xu, Z.S., Aronin, N., Zamore, P.D.: Asymmetry in the assembly of the RNAi enzyme complex. — Cell 115: 199–208, 2003.

    Article  CAS  PubMed  Google Scholar 

  • Stoutjesdijk, P.A., Singh, S.P., Liu, Q., Hurlstone, C.J., Waterhouse, P.A., Green, A.G.: HpRNA-mediated targeting of the Arabidopsis FAD2 gene gives highly efficient and stable silencing. — Plant. Physiol. 129: 1723–1731, 2002.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Takeshita, M., Suzuki, M., Takanami, Y.: Combination of amino acids in the 3a protein and the coat protein of Cucumber mosaic virus determine symptom expression and viral spread in bottle gourd. — Arch. Virol. 146: 697–711, 2001.

    Article  CAS  PubMed  Google Scholar 

  • Urcuqui-Inchima, S., Haenni, A.L., Bernardi, F.: Potyvirus proteins: a wealth of functions. — Virus. Res. 74: 157–175, 2001.

    Article  CAS  PubMed  Google Scholar 

  • Watanabe, Y.: Overview of plant RNAi. — Methods mol. Biol. 744: 1–11, 2011.

    Article  CAS  PubMed  Google Scholar 

  • Wu, H.W., Yu, T.A., Raja, J.A.J., Christopher, S.J., Wang, S.L., Yeh, S.D.: Double-virus resistance of transgenic oriental melon conferred by untranslatable chimeric construct carrying partial coat protein genes of two viruses. — Plant. Dis. 94: 1341–1347, 2010.

    Article  CAS  Google Scholar 

  • Yoshinari, K., Makoto, M., Kazunari, T.: Effects on RNAi of the tight structure, sequence and position of the target region. — Nucl. Acids Res. 32: 691–699, 2004.

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Zhang, C., Song, Y., Jiang, F., Li, G., Jiang, Y., Zhu, C., Wen, F.: Virus resistance obtained in transgenic tobacco and rice by RNA interference using promoters with distinct activity. — Biol. Plant. 56: 742–748, 2012.

    Article  CAS  Google Scholar 

  • Zhu, C.X., Song, Y.Z., Yin, G.H.: Induction of RNA-mediated multiple virus resistance to Potato Y, Tomato mosaic and Cucumber mosaic viruses. — J. Phytopathol. 157: 101–107, 2009.

    Article  CAS  Google Scholar 

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Correspondence to C. Zhu or F. Wen.

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Acknowledgments: This work was financially supported by the National Natural Science Foundation of China (No. 31272113) and the National Natural Science Foundation of Shandong Province (ZR2012CM001).

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Xie, X., Song, Y., Liu, X. et al. Different target genes and chimeric-gene hairpin structures affect virus resistance mediated by RNA silencing in transgenic tobacco. Biol Plant 58, 575–581 (2014). https://doi.org/10.1007/s10535-014-0422-9

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  • DOI: https://doi.org/10.1007/s10535-014-0422-9

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