Biotechnology Letters

, Volume 37, Issue 2, pp 417–427

Fatty acid synthesis enzyme clans

Original Research Paper

DOI: 10.1007/s10529-014-1687-y

Cite this article as:
Phan, N.N., Lee, Y.K. & Reilly, P.J. Biotechnol Lett (2015) 37: 417. doi:10.1007/s10529-014-1687-y
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Abstract

Ketoacyl reductases (KRs), hydroxyacyl dehydratases (HDs), and enoyl reductases (ERs) are part of the fatty acid/polyketide synthesis cycle. They are known as acyl dehydrogenases, enoyl hydratases, and hydroxyacyl dehydrogenases, respectively, when catalyzing their reverse reactions. Earlier, we classified these enzymes into four KR, eight HD, and five ER families by statistical criteria. Members of all four KR families and three ER families have Rossmann folds, while five HD family members have HotDog folds. This suggests that those proteins with the same folds in different families may be distantly related, and therefore in clans, even though their amino acid sequences may not be homologous. We have now defined two clans containing three of the four KR families and two of the eight HD families, using manual and statistical tests. One of the ER families is related to the KR clan.

Keywords

Enoyl reductases Hydroxyacyl dehydratases Ketoacyl reductases Phylogeny 

Abbreviations

RMSD

Root mean square deviation

P

Percentage of amino acid residues in the shorter (reference) molecule to that of the longer molecule used to calculate RMSDs

Supplementary material

10529_2014_1687_MOESM1_ESM.docx (20 kb)
Supplementary material 1 (DOCX 19 kb)

Copyright information

© Springer Science+Business Media Dordrecht 2014

Authors and Affiliations

  • Ngoc N. Phan
    • 1
  • Yuen Keong Lee
    • 1
  • Peter J. Reilly
    • 1
  1. 1.Department of Chemical and Biological EngineeringIowa State UniversityAmesUSA

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