Abstract
A taxonomic study was carried out on strain 13D2W-2T, which was isolated from a sulphur-oxidizing bacterial consortium, enriched by the deep-sea sediment of the Atlantic Ocean. The isolate was observed to be Gram-negative, oxidase- and catalase-positive, short rod-shaped and motile by means of a flagellum. Growth was observed at salinities from 0.5 to 12 % and at temperatures from 4 to 41 °C, and the strain found to be able to reduce nitrate but not degrade gelatin. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain 13D2W-2T belongs to the genus Thioclava, with highest sequence similarity of 97.8 % to Thioclava dalianensis DLFJ1-1T, followed by Thioclava pacifica TL 2T (97.7 %), while the sequence similarities to other members of the genus were all below 97.0 %. The digital DNA:DNA hybridization estimated values between strain 13D2W-2T and, respectively, T. dalianensis DLFJ1-1T and T. pacifica TL 2T were 22.6 ± 2.4 and 25.6 ± 2.4 %. The ANI values between strain 13D2W-2T and T. dalianensis DLFJ1-1T and T. pacifica TL 2T were 78.49 and 81.91 % respectively. The principal fatty acid identified was Summed Feature 8 (C18:1 ω7c/ω6c) (74.38 %). The isoprenoid quinone of strain 13D2W-2T was identified as Q10 (100 %). The major polar lipids of strain 13D2W-2T were found to be comprised of phosphatidylethanolamine, phosphatidylglycerol, an aminophospholipid, a glycolipid and three unknown phospholipids. The G+C content of the chromosomal DNA was determined to be 65.3 mol%. The combined genotypic and phenotypic data show that strain 13D2W-2T represents a novel species of the genus Thioclava, for which the name Thioclava atlantica sp. nov. is proposed, with the type strain 13D2W-2T ( = MCCC 1A02612T = LMG 27145T).
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Abbreviations
- MCCC:
-
Marine culture collection of China
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Acknowledgments
This work was financially supported by National Program on Key Basic Research Project (973 Program) (No.2012CB417300), COMRA Program (No. DY125-15-R-01), Public Welfare Project of SOA (201005032) and National Infrastructure of Natural Resources for Science and Technology Program of China (Nos. NIMR-2013-9 and NIMR-2014-9).
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Shaoneng Li and Qiliang Lai contributed equally to the paper.
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Transmission electron micrographs of cells of strain 13D2W-2T and polar lipids of strain 13D2W-2T are available as supplementary figures in ANTO Online. (DOC 365 kb)
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Lai, Q., Li, S., Xu, H. et al. Thioclava atlantica sp. nov., isolated from deep sea sediment of the Atlantic Ocean. Antonie van Leeuwenhoek 106, 919–925 (2014). https://doi.org/10.1007/s10482-014-0261-x
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DOI: https://doi.org/10.1007/s10482-014-0261-x