Skip to main content
SpringerLink
Log in

Complete nucleotide sequence and affinities of the genomic RNA of Narcissus common latent virus (genus Carlavirus)

  • Brief Report
  • Published:
Archives of Virology Aims and scope Submit manuscript

Summary.

The complete sequence of an isolate of Narcissus common latent virus (NCLV) from Zhangzhou city, Fujian, China was determined from amplified fragments of purified viral RNA. Excluding the poly(A) tail, the genomic RNA of NCLV was 8539 nucleotides (nt) long and had the typical organization for a member of the genus Carlavirus. The most closely related species were Potato virus M, Hop latent virus and Aconitum latent virus, which had 58–59% nt identity to NCLV in their entire genomes. These relationships were confirmed by a phylogenetic analysis using a composite nucleotide alignment of all the open reading frames.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

References

  • MJ Adams JF Antoniw M Bar-Joseph AA Brunt T Candresse GD Foster GP Martelli RG Milne SF Zavriev CM Fauquet (2004) ArticleTitleThe new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation Arch Virol 149 1045–1060 Occurrence Handle15098118 Occurrence Handle1:CAS:528:DC%2BD2cXjt1Sgtr4%3D

    PubMed  CAS  Google Scholar 

  • Anonymous (2001) Wisconsin Package version 10.3. Accelrys Inc., San Diego, CA, USA

  • J Badge DJ Robinson AA Brunt GD Foster (1997) ArticleTitle3′-terminal sequences of the RNA genomes of narcissus latent and maclura mosaic viruses suggest that they represent a new genus of the Potyviridae J Gen Virol 78 253–257 Occurrence Handle9010311 Occurrence Handle1:CAS:528:DyaK2sXmsl2qtw%3D%3D

    PubMed  CAS  Google Scholar 

  • Brunt AA (1971) Narcissus yellow stripe virus. AAB Descriptions of plant viruses no. 76, 4 pp. CMI/AAB, Kew, UK

  • Brunt AA (1976) Narcissus latent virus. AAB Descriptions of plant viruses no. 170, 4 pp. CMI/AAB, Kew, UK

  • Brunt AA, Atkey PT (1967) Rapid detection of narcissus yellow stripe and two other filamentous viruses in crude negatively stained narcissus sap. Rep Glasshouse Res Inst 1966, pp 155–159

  • AA Brunt (1995) Narcissus G Loebenstein RH Lawson AA Brunt (Eds) Virus and virus-like diseases of bulb and flower crops John Wiley & Sons Ltd Chichester, UK 322–334

    Google Scholar 

  • J Chen JP Chen (2002) ArticleTitleDetermination of genome sequence of potyviruses by degenerated PCR and RACE method Chin J Virol 18 371–374 Occurrence Handle1:CAS:528:DC%2BD3sXnt1ChurY%3D

    CAS  Google Scholar 

  • J Chen JP Chen SA Langeveld AFLM Derks MJ Adams (2003) ArticleTitleMolecular characterization of carla- and potyviruses from narcissus in China J Phytopathol 151 1–4 Occurrence Handle10.1046/j.1439-0434.2003.00674.x

    Article  Google Scholar 

  • SS Cruz AG Roberts DA Prior S Chapman KJ Oparka (1998) ArticleTitleCell-to-cell and phloem-mediated transport of potato virus X: The role of virions Plant Cell 10 495–510 Occurrence Handle9548978 Occurrence Handle1:CAS:528:DyaK1cXivFClsL0%3D Occurrence Handle10.1105/tpc.10.4.495

    Article  PubMed  CAS  Google Scholar 

  • NO Kalinina DV Rakitina AG Solovyev J Schiemann SY Morozov (2002) ArticleTitleRNA helicase activity of the plant virus movement proteins encoded by the first gene of the triple gene block Virology 296 321–329 Occurrence Handle12069530 Occurrence Handle1:CAS:528:DC%2BD38XksFOgtLk%3D Occurrence Handle10.1006/viro.2001.1328

    Article  PubMed  CAS  Google Scholar 

  • S Kumar K Tamura M Nei (2004) ArticleTitleMEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment Brief Bioinform 5 150–163 Occurrence Handle15260895 Occurrence Handle1:CAS:528:DC%2BD2cXntFGqu7s%3D Occurrence Handle10.1093/bib/5.2.150

    Article  PubMed  CAS  Google Scholar 

  • SY Morozov AG Solovyev (2003) ArticleTitleTriple gene block: modular design of a multifunctional machine for plant virus movement J Gen Virol 84 1351–1366 Occurrence Handle12771402 Occurrence Handle1:CAS:528:DC%2BD3sXks1Gmtrs%3D Occurrence Handle10.1099/vir.0.18922-0

    Article  PubMed  CAS  Google Scholar 

  • WP Mowat S Dawson GH Duncan DJ Robinson (1991) ArticleTitleNarcissus latent, a virus with filamentous particles and a novel combination of properties Ann Appl Biol 119 31–46 Occurrence Handle10.1111/j.1744-7348.1991.tb04841.x

    Article  Google Scholar 

  • Mowat WP, Dawson S, Duncan GH (1998) Narcissus late season yellows virus. AAB Descriptions of plant viruses no. 367. AAB, Wellesbourne, UK

  • MN Rozanov EV Koonin AE Gorbalenya (1992) ArticleTitleConservation of the putative methyltransferase domain: a hallmark of the ‘Sindbis-like’ supergroup of positive-strand RNA viruses J Gen Virol 73 2129–2134 Occurrence Handle1645151 Occurrence Handle1:CAS:528:DyaK38XlsVKrtbw%3D Occurrence Handle10.1099/0022-1317-73-8-2129

    Article  PubMed  CAS  Google Scholar 

  • C-B Wei J Chen Q-Y Zhang Y-H Shi L Lin H-Y Zheng MJ Adams J-P Chen (2005) ArticleTitleA new potyvirus from Thunberg fritillary (Fritillaria thunbergii Miq.) in Zhejiang, China Arch Virol 150 1271–1280 Occurrence Handle15789262 Occurrence Handle1:CAS:528:DC%2BD2MXltl2mtrg%3D Occurrence Handle10.1007/s00705-005-0519-8

    Article  PubMed  CAS  Google Scholar 

  • SM Wong KC Lee HH Yu WF Leong (1998) ArticleTitlePhylogenetic analysis of triple gene block viruses based on the TGB 1 homolog gene indicates a convergent evolution Virus Genes 16 295–302 Occurrence Handle9654683 Occurrence Handle1:CAS:528:DyaK1cXktlKgtbg%3D Occurrence Handle10.1023/A:1008034807216

    Article  PubMed  CAS  Google Scholar 

  • H-Y Zheng J Chen M-F Zhao L Lin J-P Chen JF Antoniw MJ Adams (2003) ArticleTitleOccurrence and sequences of Lily mottle virus and Lily symptomless virus in plants grown from imported bulbs in Zhejiang province, China Arch Virol 148 2419–2428 Occurrence Handle14648295 Occurrence Handle1:CAS:528:DC%2BD3sXptleksrk%3D Occurrence Handle10.1007/s00705-003-0207-5

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou, People’s Republic of China

    H.-Y. Zheng, J. Chen & J.-P. Chen

  2. Wheat Pathogenesis Programme, Plant Pathogen Interactions Division, Rothamsted Research, Harpenden, Herts, U.K.

    M. J. Adams

Authors
  1. H.-Y. Zheng
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. J. Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. M. J. Adams
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. J.-P. Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

Rights and permissions

Reprints and permissions

About this article

Cite this article

Zheng, HY., Chen, J., Adams, M. et al. Complete nucleotide sequence and affinities of the genomic RNA of Narcissus common latent virus (genus Carlavirus). Arch Virol 151, 1667–1672 (2006). https://doi.org/10.1007/s00705-006-0727-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-006-0727-x

Keywords

Search

Navigation