Dynamics of photosynthetic photon flux density (PPFD) and estimates in coastal northern California
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- Ge, S., Smith, R.G., Jacovides, C.P. et al. Theor Appl Climatol (2011) 105: 107. doi:10.1007/s00704-010-0368-6
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Plants require solar radiation for photosynthesis and their growth is directly related to the amount received, assuming that other environmental parameters are not limiting. Therefore, precise estimation of photosynthetically active radiation (PAR) is necessary to enhance overall accuracies of plant growth models. This study aimed to explore the PAR radiant flux in the San Francisco Bay Area of northern California. During the growing season (March through August) for 2 years 2007–2008, the on-site magnitudes of photosynthetic photon flux densities (PPFD) were investigated and then processed at both the hourly and daily time scales. Combined with global solar radiation (RS) and simulated extraterrestrial solar radiation, five PAR-related values were developed, i.e., flux density-based PAR (PPFD), energy-based PAR (PARE), from-flux-to-energy conversion efficiency (fFEC), and the fraction of PAR energy in the global solar radiation (fE), and a new developed indicator—lost PARE percentages (LPR)—when solar radiation penetrates from the extraterrestrial system to the ground. These PAR-related values indicated significant diurnal variation, high values occurring at midday, with the low values occurring in the morning and afternoon hours. During the entire experimental season, the overall mean hourly value of fFEC was found to be 2.17 μmol J−1, while the respective fE value was 0.49. The monthly averages of hourly fFEC and fE at the solar noon time ranged from 2.15 in March to 2.39 μmol J−1 in August and from 0.47 in March to 0.52 in July, respectively. However, the monthly average daily values were relatively constant, and they exhibited a weak seasonal variation, ranging from 2.02 mol MJ−1 and 0.45 (March) to 2.19 mol MJ−1 and 0.48 (June). The mean daily values of fFEC and fE at the solar noon were 2.16 mol MJ−1 and 0.47 across the entire growing season, respectively. Both PPFD and the ever first reported LPR showed strong diurnal patterns. However, they had opposite trends. PPFD was high around noon, resulting in low values of LPR during the same time period. Both were found to be highly correlated with global solar radiation RS, solar elevation angle h, and the clearness index Kt. Using the best subset selection of variables, two parametric models were developed for estimating PPFD and LPR, which can easily be applied in radiometric sites, by recording only global solar radiation measurements. These two models were found to be involved with the most commonly measured global solar radiation (RS) and two large-scale geometric parameters, i.e., extraterrestrial solar radiation and solar elevation. The models were therefore insensitive to local weather conditions such as temperature. In particular, with two test data sets collected in USA and Greece, it was verified that the models could be extended across different geographical areas, where they performed well. Therefore, these two hourly based models can be used to provide precise PAR-related values, such as those required for developing precise vegetation growth models.
Photosynthetically active radiation (PAR) is often regarded as the portion of the solar spectrum extending from 0.4 to 0.7 μm (McCree 1972; Alados and Alados-Arboledas 1999; Jacovides et al. 2004). PAR is important as it is the sole energy source used by plants for photosynthesis reactions that partially convert physical solar energy into bioenergy-carrying biomass (Mariscal et al. 2000; Tsubo and Walker 2005; Myers 2005). Precise estimation of incident PAR is therefore essential in assessing and modeling plant growth and biological production management in different vegetative ecosystems (Alados and Alados-Arboledas 1999). Such estimation could be integrated with plant growth models and decision-making systems to optimize vegetation management activities and solar energy conversion efficiency into bioenergy-loading biomass (Spitters et al. 1986; Papaionnou et al. 1993; Alados et al. 1996; Gueymard 2000).
Even though PAR is extremely important, it is often not measured in most meteorological stations around the world; therefore, it has to be estimated from the commonly measured global solar radiation (RS). As a result, PAR is usually estimated with other measured variables as follows, using one of three approaches: (a) the fractional energy of PAR to global solar radiation (fE; Kvifte et al. 1983; Papaionnou et al. 1993; Udo and Aro 1999; Mõttus et al. 2001; Tsubo and Walker 2005), (b) the fraction of photon flux/energy conversion of PAR (fFEC; Alados et al. 1996; Udo and Aro 1999, 2000; Alados et al. 1996; Alados and Alados-Arboledas 1999; Al-Shooshan 1997; Finch et al. 2004; Jacovides, et al. 2004, 2007), or (c) the PAR photon flux density (PPFD; McCree 1966; Papaionnou et al. 1993; Alados et al. 1996; Jacovides et al. 2004). Such processes were driven by different quantitative methods (McCree 1972; McCartney 1978; Udo and Aro 1999), and each method has its positive and negative attributes.
Use of these models, however, varies with location and season (Stigter and Musabilha 1982; Udo and Aro 1999). It is thus required that such methods be recalibrated to account for local climatic characteristics before application. Relatively long-term measures, such as yearly and seasonally, daily averaged fE values, are not significantly affected by upper atmospheric and lower tropospheric conditions, but the day-to-day differences in these values apparently vary with cloud conditions (McCree 1966; Szeicz 1974; Britton and Dodd 1976; Papaionnou et al. 1993). Therefore, average daily and/or monthly values of fE are often used, even though fE is not a constant (Stigter and Musabilha 1982). As such, diurnal PAR variability is often ignored, even though it is known to be an important factor associated with eco-physiological processes of plants, e.g., photosynthesis, photoinhibition, and net ecosystem energy exchange (Mohotti and Lawlor 2002; Misson et al. 2005). The diurnal changes of PAR-related values thus could help to more precisely estimate light use efficiency when building energy-derived plant growth models and for other activities that require detailed assessments of photosynthetic radiation levels.
In the past, PAR was roughly estimated as approximately half of the amount of incident global solar, producing errors too large for estimating plant growth accurately. However, more precise estimation of PAR is required for plant growth models and decision-making systems when they involve detailed management practices, such as the prediction of biological controls, irrigation requirements, and/or needed fertilization rates (Goudriaan and van Laar 1994; Asner and Wessman 1997; Mariscal et al. 2000); otherwise, the accumulated errors can be problematic and costly. To date, estimation of PAR has almost totally focused on estimation of incident PAR flux on the ground surface and above the vegetation canopy directly from the ground-based global solar radiation. However, when light penetrates the air, it is affected by several atmospheric processes such as Rayleigh scattering, water vapor and ozone absorption, and aerosol loadings (Misson et al. 2005; Jacovides et al. 2007). Apparently, as a counterpart of the incident PAR, the lost PAR energy ratio (LPR) in the atmosphere is much more directly related with absorption processes than the incident PAR. Therefore, the LPR could also play an important role to help estimate the temporal variability of incident PAR. Unfortunately, this portion of PAR has not been extensively studied, and its dynamics are still unclear.
This study is a part of a broader research effort aimed at predicting growth of an important invasive plant, yellow starthistle (YST), Centaurea solstitialis, which is considered a noxious weed in the states of California, Idaho, Oregon, and Washington in the USA (Roche and Thill 2001). Biological control, the manipulated use of herbaceous insects to control plant growth, is an important method that is used to achieve a more sustainable control strategy for this weed, and predictive models are used to help plan and manage the use of this technology. Thus, a precise plant growth model driven by realistic environmental stimuli is a critical tool to help plan an integrated weed control program to meet the goals of area-wide weed management across entire watersheds. Therefore, it is expected that PAR estimation models will be integrated with other knowledge and approaches to improve the management of YST. The present analysis aims to (a) investigate seasonal and diurnal patterns of PAR-related values (PPFD, PARE, fE, fFEC, LPR) during the primary plant growing season in northern California and (b) develop models to precisely estimate hourly PAR values along the coastal area of northern California. If successful, this will aid in the wider improvement and application of YST growth models that are to be used in the integrated management of this and other noxious weed species.
2 Measurement site and data analysis
2.1 Study area
The primary field study site was located on a grass-dominated hill slope with moderate densities of YST. The study site was adjacent to Chabot Regional Park located near the City of Moraga, California in the San Francisco Bay region of the USA. The climate at the site is Mediterranean and is characterized by a winter rainy season (usually beginning in October) followed by a prolonged dry season (starting in March or April). The climate is further modified by the influence of marine factors that causes cooler summers and warmer winters, along much of the coastline and adjacent low-lying areas. During the dry season, a periodic fog often forms due to an emergent marine layer that inundates the land at night and dissipates during midday. The experimental period (March through August) represents the main growing season for YST, even though seeds begin germinating with the winter rains; however, cool temperatures typically limit excessive vegetative growth. Therefore, the field aspects of this study focused on the dry spring and summer season (March to August), coinciding with the time of rapid YST growth.
2.2 Measurements and methodology
The study was conducted over two growing seasons (spring through summer) of 2007 and 2008. During 2007, PAR data were collected from sunrise to sunset 1 day every 2 weeks, from June through August; in 2008, the PAR data were collected from sunrise to sunset on 2 days every week, from March through August. The photosynthetic photon flux density was measured with a linear AccuPAR LP-80 Ceptometer (Decagon Devices, Pullman, WA, USA), which outputs data in photobiological units of micromoles per square meter per second. The ceptometer, which measures light in the 400–700-nm wavebands across 80 sensors embedded along an 84-cm probe, was set to automatically collect PPFD measurements every 15 min. This instrument has an error of ±3% for common light sources including the sun. Additional climatic data were downloaded from the website of California Irrigation Management Information System, a state governmental agency in region. The data were collected at a weather station located in Moraga, CA, USA (about 2 km from the experimental site) and included an hourly global solar radiation (RS, measured on a horizontal surface with a Li-Cor Pyranometer model LI200S, with an error up to 5% under natural sunlight conditions), vapor pressure, air temperature, precipitation, relative humidity, and dew point temperature. Given the proximity (2 km) and topographic similarity between the weather station and the experimental site, climatic parameters measured at the weather station were highly similar to those occurring at the experimental site. Due to cosine response issues of the instrumentation, this analysis is limited to cases with solar elevation angles h > 12° (i.e., 0.21 rad). The hourly data were further checked for inconsistencies to eliminate problems associated with questionable measurements.
Hourly and daily geometric parameters were estimated (see “Appendix”) to supplement the AccuPAR LP-80 ceptometer data. Longitude and latitude (−122.12 W, 37.84 N) of the experimental site were used to calculate extraterrestrial solar radiation, sunrise and sunset times, day-length, and day angle for the field location. The declination angle, the solar angle, and the solar elevation angle were calculated for the middle of each local solar hour and used to relate the calculated and corresponding observed values during each hourly sampling period. We also included the clearness index, Kt (the ratio of the global-to-extraterrestrial solar radiation), in our assessments as it accounts for the attenuation of solar radiation by most atmospheric constituents. Moreover, fE at the top of the atmosphere was assumed to be 40% of global solar radiation (Monteith and Unsworth 1990).
Conversion of PAR from a photon flux to an energy unit requires detailed spectral and solar radiation data that is expensive to collect. For simplicity, McCree’s conversion factor 4.57 μmol J−1 (McCree 1972; Jones et al. 2003) was used to convert hourly PAR photon flux into its energy alternative (i.e., PARE). This conversion factor is a conservative quantity when used under various atmospheric conditions (McCartney 1978; Jacovides et al. 1997). In the present analysis, it was preferred to engage such a constant conversion factor centered at 550 nm across the wavelength range of PAR wavelength limits. After translating PPFD into PARE, fE was calculated as the fraction of PARE to global solar radiation, measured at the nearby weather station. For consistency, hourly and daily PARE values are expressed in megajoules per square meter per hour and megajoules per square meter per day, respectively.
The fFEC values are computed as fractions of PPFD to global solar radiation RS occurring over a measurement increment (e.g., an hour or a day). For daily fFEC, the unit was moles per megajoules, but the hourly fFEC was expressed in micromoles per joule to maintain consistency with energy units of RS and PARE at hourly and daily scales.
Hourly PPFD (moles per square meter per hour) was summed within a day when hourly solar elevation was higher than 12° to estimate the daily PPFD (moles per square meter per day). Similarly, the daily global solar radiation RS, PARE, and LPR were computed by summing the individual hourly values. The daily fE was calculated from the daily sum of PARE divided by that of RS.
The monthly averaged PAR values and corresponding standard errors were used to assess diurnal trends and their fluctuations with relevant PAR expressions (PPFD, fE, fFEC, and LPR) based on the comparisons of monthly averaged hourly values. The seasonal trends were determined by comparing monthly averaged hourly PAR values at the same hour between different months for the time intervals considered (March through August). To assess the diurnal pattern of a parameter in question, the different monthly averaged hourly values were compared among different hourly periods during any given day, from sunrise to sunset for each month. In March, PAR measurements were taken between 8:00 and 17:00, while for April through August, measurements were taken between 7:00 and 18:00.
Correlation analysis was used to examine associations between PAR values and selected climatic variables, including global solar radiation, air temperature, relative humidity, vapor pressure, dew point temperature, solar elevation (transformed into its sine function), and the clearness index (Kt). These variables were further used to develop multiple linear models for estimating hourly PAR values. About three fourths of these hourly values (n = 345) were randomly selected for model calibration, while the remaining one fourth (n = 115) were used for model verification.
3.1 Distribution of monthly mean daily PPFD, PARE, RS, fFEC, fE, and LPR
3.2 Diurnal patterns of monthly mean hourly PAR-related values
3.3 Proposed parametric models for both PPFD and LPR
Significant correlation coefficients (r) of four PAR-relevant values when compared with locally measured weather variables (n = 460, p ≤ 0.01)
fE or fFEC
Sin(solar elevation)/solar elevation
Ground solar radiation
Dew point temperature
4.1 Variability of PAR values
Both fE and fFEC are two important characteristics of PAR because they are closely related to light use efficiency in plant growth (McCree 1972; Papaionnou et al. 1993; Alados et al. 1996). They also have important implications for global climate change and other environmental issues (Hanan et al. 2002). Therefore, they were the main focuses for similar earlier studies (Udo and Aro 1999; Tsubo and Walker 2005). Across a range of latitudes, averages of fE have been shown to vary between 0.43 and 0.49, with individual values ranging from 0.41 to 0.52 when PAR was defined as sunlight waveband between 0.4 and 0.7 μm (Kvifte et al. 1983; Tsubo and Walker 2005). Within a season, the daily ratios may change only slightly from day to day, or even from month to month (Udo and Aro 1999). In most studies, therefore, daily fE has been assumed to be relatively constant across latitudes, diurnally, and temporally (Williams 1976). Similarly, Jacovides et al. (2007) reported that seasonal fFEC changed only slightly from 2.006 mol/MJ in winter to 1.989 mol/MJ in summer, with an annual mean of 1.995 mol/MJ. In this analysis, we found that the seasonal differences of fE and fFEC, on a daily basis, were not as large as those recorded on an hourly basis, suggesting that the time scale considered has important implications for the conversion of fFEC and fE. Therefore, we imagine that plant growth models that use PAR would provide more precise estimation of vegetative production when the diurnal patterns of PAR are considered, due to apparent changes of PAR-related values during a daily time course, assuming that other given model driven factors are fixed.
4.2 Fog effects on PAR radiation
The frequent occurrence of dense fog over the experimental site was a common climatic characteristic observed during the time intervals examined here. It is known that suspended particles in the atmosphere, such as aerosol particles and fog droplets, can scatter and absorb solar radiation in the visible wavelengths. It also is well-known that aerosol activation is the process leading to fog formation. Scattering and absorption depend on particle number and properties (size and shape) that in turn are related to both dynamic and thermodynamic processes occurring at particular spatial and temporal scales, which may themselves further modify particle number and size (Elias et al. 2006).
The effect of fog is clearly seen in the diurnal course of fE and fFEC ratios (Fig. 2d, e), which is further dependent on light level, solar elevation angle, and fraction of direct versus diffuse light (Monteith and Unsworth 1990). That is, when light levels are already low during times of dense fog, there is up to 50% (and potentially more) loss of PAR radiation through this aerosol distribution. Not only is there more aerosol-induced extinction of PAR radiation but also the overall incoming solar radiation is reduced by a similar proportion under these conditions. Eugster et al. (2006) reported that during dense fog conditions, PPFD was only 47% of the values observed at the same time of a day under fog-free conditions. Figure 2 suggests that fog extinction was uniform over the site domain for both morning and afternoon hours, when present.
The findings in this analysis suggest that both fE and fFEC values were heavily affected by fog. In the early morning during summer (June through August), fE and fFEC were often higher than the corresponding values in any other month. At the same time, the corresponding global solar radiation was lower; therefore, the resulting PPFD and PARE were also lower. Nevertheless, in a recent study, Wang et al. (2009) reported that atmospheric aerosol loadings have increased globally during the past three decades. Such a phenomenon could result in a decrease of global solar radiation; however, global solar radiation may also vary regionally in response to economic development and environmental regulation (Wild 2009) via pollution levels. Despite these findings, it remains unclear how both fE and fFEC would be affected.
Another important consideration of the effects of fog is the discrimination of fFEC and fE values under various sky conditions. In this analysis, no clear effect on these ratios was determined through categorization of observed sky conditions. In this situation, a more likely scenario is that the presence of dense fog masks sky vault-induced resultant cloud cover effects and their impacts on the ground radiant fluxes and consequently on those fractions.
4.3 Generality of our findings within the context of previous work
Ratios of photon flux density to global solar radiation (fFEC) at different worldwide locations
Hourly (μmol J−1)
Daily (mol MJ−1)
Hodges and Kanemasu (1977)
Dar as Salaam, Tanzania
Stigter and Musabilha (1982)
Howel et al. (1983)
Meek et al. (1984)
Papaionnou et al. (1993)
Alados et al. (1996)
Olseth and Skartveit (1997)
Udo and Aro (1999)
Finch et al. (2004)
Jacovides et al. (2004)
Jacovides et al. (2007)
4.4 Predicting PAR values
PAR exerts important effects on the eco-physiological characteristics of plants. In the literature, several models have been developed to estimate PAR values, contributing to many practical applications in the area of plant physiology, biomass production, and natural illumination in greenhouses. These models range from physics-based radiation transfer models to more descriptive empirical parametric models. The physics-based models have a reasonable and reliable scientific underpinning but are often complex, owing to the difficulty in obtaining data for all of the required parameters. Thus, their detailed requirements make them difficult and costly to use, especially if they are fully developed (Alados et al. 1996). In contrast, empirical models have been shown to be both reasonable and useful in practice (Al-Shooshan 1997). Empirical models are often based on different ground-based climatic factors, including geometric parameters, and are generally in the form of multiple linear regression models. A more reliable and accurate method is to incorporate important correlated factors into optional models for more accurate estimations (Udo and Aro 1999). Some of these models force the intercept to be zero (Udo and Aro 1999; Jacovides et al. 2004). These models, although simple, may induce errors, especially when estimating values on an hourly basis. For this reason, we developed parametric models with intercepts. The intercepts might be treated as an offset, which could be derived from the trends of long-term estimates (e.g., seasonal means), rather than estimates for shorter-term time scales (e.g., hourly means). However, when forcing the estimation models through the origin, the result could remove some long-term trends in climate change. Moreover, previous models have only considered the main effects of the climatic and geometric variables, while their interactions have never been taken into consideration or incorporated into predictive models (Alados and Alados-Arboledas 1999; Tsubo and Walker 2005). We believe that these interaction terms should be included to improve model predictions.
PAR-related values exhibited different patterns, which changed with time scale of consideration. The monthly averaged values were relatively stable, but diurnal patterns clearly existed within the studied values.
Concerning the diurnal variability of PAR: (a) low solar elevation angles resulted in a longer slant path of the direct solar beam flux traversing the atmosphere in the spring, which led to lower radiant fraction values then higher values observed in the summer. The monthly average hourly fraction fFEC values measured at noon hours ranged from 2.15 in March to 2.39 μmol J−1 in August, while the respective fractions fE at the same time varied from 0.47 in March to 0.52 in July.
The monthly average daily ratios of fFEC and fE exhibited a weak seasonal dependence, low values in the spring and high but more variable values in the summer; lowest values occurred in March (2.02 mol MJ−1 and 0.45, respectively) and the highest values were observed in June (2.19 mol MJ−1 and 0.48, respectively). An overall mean daily value of 2.16 mol MJ−1 for fFEC and 0.47 for fE was found over the experimental period.
Given global solar radiation, global PAR, and other related climatic data, the hourly PPFD component seems essential for many agricultural applications and could be estimated accurately to obtain diurnal changes of PAR through empirical parametric models. In this analysis, an empirical relationship between hourly PPFD and hourly global solar radiation RS, clearness index Kt, and solar elevation angle h was established. Moreover, if only global solar radiation is measured, we also developed a model to estimate the lost percentages of PAR when it passed through the top of the atmosphere through it to the ground. Such a model was derived from the ground-based global solar radiation, clearness index, and solar elevation angle.
This project is funded by a grant from NASA for a joint cooperative research effort on invasive species control between NASA, the University of California and USDA-ARS, and by USDA-ARS CRIS Project 5325-22000-020-00D. We thank Marie Franc for assistance with project coordination and Skye Harper for field assistance. We also appreciate the California Department of Water Resources for providing the online weather data through the California Irrigation Management Information System and the East Bay Municipal Utility District for providing access to the study site.
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