Abstract
The vacuolar H+-ATPases (V-ATPases) are ATP-dependent proton pumps responsible for acidification of intracellular compartments in eukaryotic cells. To investigate the functional roles of the V-ATPase in Schizosaccharomyces pombe, the gene vma1 encoding subunit A or vma3 encoding subunit c was disrupted. Both deletion mutants lost the capacity for vacuolar acidification in vivo, and showed sensitivity to neutral pH or high concentrations of divalent cations including Ca2+. The delivery of FM4-64 to the vacuolar membrane and accumulation of Lucifer Yellow CH were strongly inhibited in the vma1 and vma3 mutants. Moreover, deletion of the S. pombe vma1 + or vma3 + gene resulted in pleiotropic phenotypes consistent with lack of vacuolar acidification, including the missorting of vacuolar carboxypeptidase Y, abnormal vacuole morphology, and mating defects. These findings suggest that V-ATPase is essential for endocytosis, ion and pH homeostasis, and for intracellular targeting of vacuolar proteins and vacuolar biogenesis in S. pombe.
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References
Alfa C, Fantes P, Hyams J, McLoed M, Warbrick E (1993) Experiments with fission yeast: a laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
Anraku Y, Hirata R, Wada Y, Ohya Y (1992) Molecular genetics of the yeast vacuolar H+-ATPase. J Exp Biol 172:67–81
Arata Y, Nishi T, Kawasaki-Nishi S, Shao E, Wilkens S, Forgac M (2002) Structure, subunit function and the regulation of coated vesicle and yeast vacuolar (H+)-ATPases. Biophys Biochim Acta 1555:71–74
Bachhawat AK, Manolson MF, Murdock DG, Garman JD, Jones EW (1993) The VPH2 gene encodes a 25-kDa protein required for activation of the yeast vacuolar H(+) ATPase. Yeast 9:175–184
Bellemare DR, Shaner L, Morano KA, Beaudoin J, Langlois R, Labbé S (2002) Ctr6, a vacuolar membrane copper transporter in Schizosaccharomyces pombe. J Biol Chem 277:46676–46686
Bonangelino CJ, Chavez, EM, Bonifacino JS (2002) Genomic screen for vacuolar protein sorting genes in Saccharomyces cerevisiae. Mol Biol Cell 13:2486–2501
Bone N, Millar JB, Toda T, Armstrong J (1998) Regulated vacuole fusion and fission in Schizosaccharomyces pombe: an osmotic response dependent on MAP kinases. Curr Biol 8:135–144
Borrelly GPM, Harrison MD, Robinson AK, Cox SG, Robinson NJ, Whitehall SK (2002) Surplus zinc is handled by Zym1 metallothionein and Zhf endoplasmic reticulum transporter in Schizosaccharomyces pombe. J Biol Chem 277:30394–30400
Bowman EJ, Kendle R, Bowman BJ (2000) Disruption of vma-1, the gene encoding the catalytic subunit of the vacuolar H+-ATPase, causes severe morphological changes in Neurospora crassa. J Biol Chem 175:167–176
Cheng H, Sugiura R, Wu W, Fujita M, Lu Y, Sio SO, Kawai R, Takegawa K, Shuntoh H, Kuno T (2002) Role of the Rab GTP-binding protein Ypt3 in the fission yeast exocytic pathway, and its connection to calcineurin function. Mol Biol Cell 13:2963–2976
Choi KY, Ji YJ Dhakal BK, Yu J-R, Cho C, Song WK, Ahnn J (2003) Vacuolar-type H+-ATPase E subunit is required for embryogenesis and yolk transfer in Caenorhabditis elegans. Gene 311:13–23
Clemens S, Bloss T, Vess C, Neumann D, Nies DH, zur Nieden U (2002) A transporter in the endoplasmic reticulum of Schizosaccharomyces pombe cells mediates zinc storage and differentially affects transition metal tolerance. J Biol Chem 277:18215–18221
Cobbett CS (2000) Phytochelatins and their roles in heavy metal detoxification. Plant Physiol 123:825–832
Cooper AA, Stevens TH (1996) Vps10p cycles between the late-Golgi and prevacuolar compartments in its function as the sorting receptor for multiple yeast vacuolar hydrolases. J Cell Biol 133:529–542
Davies SA, Goodwin SF, Kelly DC, Wang Z, Sozen MA, Kaiser K, Dow JAT (1996) Analysis and inactivation of vha55, the gene encoding the vacuolar ATPase B-subunit in Drosophila melanogaster reveals a larval lethal phenotype. J Biol Chem 271:30677–30684
Dow JAT, Davies SA, Guo Y, Graham S, Finbow M, Kaiser K (1997) Molecular genetic analysis of V-ATPase function in Drosophila melanogaster. J Exp Biol 200:237–245
Egel R (1989) Mating type genes, meiosis, and sporulation. In: Nasim A, Young P, Johnson BF (eds) Molecular biology of the fission Yeast. Academic Press, New York; pp 31–73
Eide DJ, Bridgham JT, Zhao Z, Mattoon JR (1993) The vacuolar H+-ATPase of Saccharomyces cerevisiae is required for efficient copper detoxification, mitochondrial function, and iron metabolism. Mol Gen Genet 241:447–456
Forgac M (1989) Structure and function of the vacuolar class of ATP-driven proton pumps. Physiol Rev 69:765–796
Förster C, Kane PM (2000) Cytosolic Ca2+ homeostasis is a constitutive function of the V-ATPase in Saccharomyces cerevisiae. J Biol Chem 275:38245–38253
Förster C, Santos MA, Ruffert S, Krämer R, Revuelta JL (1999) Physiological consequence of disruption of the VMA1 gene in the riboflavin overproducer Ashbya gossypii. J Biol Chem 274:9442–9448
Ghislain M, Bowman EJ (1992) Sequence of the genes encoding subunits A and B of the vacuolar H+-ATPase of Schizosacchaaromyces pombe. Yeast 8:791–799
Gimble FS, Thorner J (1992) Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae. Nature 357:301–306
Graham LA, Powell B, Stevens TH (2000) Composition and assembly of the yeast vacuolar H+-ATPase complex. J Exp Biol 203:61–70
Grimm C, Kohli J, Murray J, Maundrell K (1988) Genetic engineeering of Schizosaccharomyces pombe—a system for gene disruption and replacement using the ura4 gene as a selectable marker. Mol Gen Genet 215:81–86
Gu HH, Xu J, Gallagher M, Dean GE (1993) Peptide splicing in the vacuolar ATPase subunit A from Candida tropicalis. J Biol Chem 268:7372–7381
Hirata R, Ohsumi Y, Nakano A, Kawasaki H, Suzuki K, Anraku Y (1990) Molecular structure of a gene, VMA1 , encoding the catalytic subunit of H+-translocating adenosine triphosphatase from vacuolar membranes of Saccharomyces cerevisiae. J Biol Chem 265:6726–6733
Iwaki T, Osawa F, Onishi M, Koga T, Fujita Y, Hosomi A, Tanaka N, Fukui Y, Takegawa K (2003) Characterization of vps33 +, a gene required for vacuolar biogenesis and protein sorting in Schizosaccharomyces pombe. Yeast 20:845–855
Kane PM, Parra KJ (2000) Assembly and regulation of the yeast vacuolar H+-ATPase. J Exp Biol 203:81–87
Kane PM, Yamashiro CT, Wolczyk DF, Neff N, Goebl M, Stevens TH (1990) Protein splicing converts the yeast TFP1 gene product to the 69-kDa subunit of the vacuolar H+-adenosine triphosphatase. Science 250:651–657
Kane PM, Kuehn MC, Howard-Stevenson I, Stevens TH (1992) Assembly and targeting of peripheral and integral membrane subunits of the yeast vacuolar H+-ATPase. J Biol Chem 267:447–454
Kane PM, Tarsio M, Liu J (1999) Early steps in assembly of the yeast vacuolar H+-ATPase. J Biol Chem 274:17275–17283
Kawasaki-Nishi S, Nishi T, Forgac M (2003) Proton trasnlocation driven by ATP hydrolysis in V-ATPase. FEBS Lett 545:76–85
Klionsky DJ, Nelson H, Nelson N (1992) Compartment acidification is required for efficient sorting of proteins to the vacuole in Saccharomyces cerevisiae. J Biol Chem 267:3416–3422
Kuroki Y, Juvvadi PR, Arioka M, Nakajima H, Kitamoto K (2002) Cloning and characterization of vmaA, the gene encoding a 69-kDa catalytic subunit of the vacuolar H+-ATPase during alkaline pH mediated growth of Aspergillus oryzae. FEMS Microbiol Lett 209:277–282
Liu Q, Leng X-H, Newman PR, Vasilyeva E, Kane PM, Forgac M (1997) Site-directed mutagenesis of the yeast V-ATPase A subunit. J Biol Chem 272:11750–11756
Manolson MF, Proteau D, Preston RA, Stenbit A, Roberts BT, Hoyt MA, Preuss D, Mulholland J, Botstein D, Jones EW (1992) The VPH1 gene encodes a 95-kDa integral membrane polypeptide required for in vivo assembly and activity of the yeast vacuolar H+-ATPase. J Biol Chem 267:14294–14303
Manolson MF, Wu B, Proteau D, Taillon BE, Roberts BT, Hoyt MA, Jones EW (1994) STV1 gene encodes functional homologue of 95-kDa yeast vacuolar H+-ATPase subunit Vph1p. J Biol Chem 269:14064–14074
Marcusson EG, Horazdovsky BF, Cereghino JL, Gharakhanian E, Emr SD (1994) The sorting receptor for yeast vacuolar carboxypeptidase Y is encoded by the VPS10 gene. Cell 77:579–586
Morano KA, Klionsky DJ (1994) Differential effects of compartment deacidification on the targeting of membrane and soluble proteins to the vacuole in yeast. J Cell Sci 107:2813–2824
Moreno S, Klar A, Nurse P (1990) Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol 194:795–823
Morishita M, Shimoda C (2000) Positioning of medial actin rings affected by eccentrically located nuclei in a fission yeast mutant having large vacuoles. FEMS Microbiol Lett 188:63–67
Morishita M, Morimoto F, Kitamura K, Koga T, Fukui Y, Maekawa H, Yamashita I, Shimoda C (2002) Phosphatidylinositol 3-phosphate 5-kinase is required for the cellular response to nutritional strarvation and mating pheromone signals in Schizosaccharomyces pombe. Genes Cells 7:199-215
Munn AL, Riezman H (1994) Endocytosis is required for the growth of vacuolar H+-ATPase-defective yeast: idetification of six new END genes. J Cell Biol 127:373–386
Murray JM, Johnson DI (2001) The Cdc42p GTPase and its regulators of Nrf1p and Scd1p are involved in endocytic trafficking in the fission yeast Schizosaccharomyces pombe. J Biol Chem 276:3004–3009
Nakamura T, Nakamura-Kubo M, Hirata A, Shimoda C (2001) The Schizosaccharomyces pombe spo3 + gene is required for assembly of the forespore membrane and genetically interacts with psy1 +-encoding syntaxin-like protein. Mol Biol Cell 12:3955–3972
Nelson H, Nelson N (1990) Disruption of genes encoding subunits of yeast vacuolar H+-ATPase causes conditional lethality. Proc Natl Acad Sci USA 87:3503–3507
Nishi T, Forgac M (2002) The vacuolar (H+)-ATPases—Nature’s most versatile proton pumps. Nature Rev 3:94–103
Oka T, Futai M (2000) Requirement of V-ATPase for ovulation and embryogenesis in Caenorhabditis elegans. J Biol Chem 275:29556–29561
Okorokov LA, Silva FE, Façanha ALO (2001) Ca2+ and H+ homeostasis in fission yeast: a role of Ca2+/H+ exchange and distinct V-H+-ATPases of the secretory pathway organelles. FEBS Lett 505:321–324
Ohya Y, Ohsumi Y, Anraku Y (1986) Isolation and characterization of Ca2+-sensitive mutants of Saccharomyces cerevisiae. J Gen Microbiol 132:979–988
Ohya Y, Umemoto N, Tanida I, Ohta A, Iida H, Anraku Y (1991) Calcium-sensitive cls mutants of Saccharomyces cerevisiae showing a Pet- phenotype are ascribable to defects of vacuolar membrane H+-ATPase activity. J Biol Chem 266:13971–13977
Ortiz DF, Kreppel L, Speiser DM, Scheel G, McDonaldo G, Ow DW (1992) Heavy metal tolerance in the fission yeast requires an ATP-binding cassette-type vacuolar membrane transporter. EMBO J 11:3491–3499
Ortiz DF, Ruscitti T, McCue KF, Ow DW (1995) Transport of metal-binding peptides by HMT1, a fission yeast ABC-type vacuolar membrane protein. J Biol Chem 270:4721–4728
Perzov N, Padler-Karavani V, Nelson H, Nelson N (2002) Characterization of yeast V-ATPase mutants lacking Vph1p or Stv1p and the effect on endocytosis. J Exp Biol 205:1209–1219
Peters C, Bayer MJ, Bühler S, Anderson JS, Mann M, Mayer A (2001) Trans-complex formation by proteolipid channels in the terminal phase of membrane fusion. Nature 409:581–588
Petersen J, Nielsen O, Egel R, Hagan IM (1998) F-actin distribution and function during sexual differentiation in Schizosaccharomyces pombe. J Cell Sci 111:867–876
Plant PJ, Manolson MF, Grinstein S, Demaurex N (1999) Alternative mechanisms of vacuolar acidification in H+-ATPase-deficient yeast. J Biol Chem 274:37270–37279
Pujol N, Bonnerot C, Ewbank JJ, Kohara Y, Thierry-Mieg D (2001) The Caenorhabditis elegans unc-32 gene encodes alternative forms of a vacuolar ATPase a subunit. J Biol Chem 276:11913–11921
Ramsay LM, Gadd GM (1997) Mutants of Saccharomyces cerevisiae defective in vacuolar function confirm a role for the vacuole in toxic metal ion detoxification. FEMS Microbiol Lett 152:293–298
Roberts CJ, Raymond CK, Yamashiro CT, Stevens TH (1991) Methods for studying the yeast vacuole. In: Guthrie C, Fink GR (eds) Guide to yeast genetics and molecular biology. Academic Press, San Diego, pp 644–661
Russell P, Nurse P (1986) Schizosaccharomyces pombe and Saccharomyces cerevisiae: a look at yeasts divided. Cell 45:781–782
Scimeca J-C, Franchi A, Trojani C, Parrinello H, Grosgeorge J, Robert C, Jaillon O, Poirier C, Gaudray P, Carle GF (2000) The gene encoding the mouse homologue of the human osteoclast-specific 116-kDa V-ATPase subunit bears a deletion in osteosclerotic ( oc/oc) mutants. Bone 26:207–213
Stevens TH, Forgac M (1997) Structure, function and regulation of the vacuolar (H+)-ATPase. Annu Rev Cell Dev Biol 13:779–808
Suga M, Hatakeyama T (2001) High efficiency transformation of Schizosaccharomyces pombe pretreated with thiol compounds by electroporation. Yeast 18:1015–1021
Suga M, Isobe M, Hatakeyama T (2000) Cryopreservation of competent intact yeast cells for efficient electroporation. Yeast 16:889–896
Szczypka M, Zhu Z, Silar P, Thiele DJ (1997) Saccharomyces cerevisiae mutants altered in vacuole function are defective in copper detoxification and iron-responsive gene transcription. Yeast 13:1423–1435
Tabuchi M, Iwaihara O, Ohtani Y, Ohuchi N, Sakurai J, Morita T, Iwahara S, Takegawa K (1997) Vacuolar protein sorting in fission yeast: cloning, biosynthesis, transport, and processing of carboxypeptidase Y from Schizosaccharomyces pombe. J Bacteriol 179:4179–4189
Takegawa K, DeWald DB, Emr SD (1995) Schizosaccharomyces pombe Vps34p, a phosphatidylinositol-specific PI 3-kinase essential for normal cell growth and vacuole morphology. J Cell Sci 108:3745–3756
Takegawa K, Tokutomi S, Bhuiyan MSA, Tabuchi M, Fujita Y, Iwaki T, Utsumi S, Tanaka N (2003) Heterologous expression and characterization of Schizosaccharomyces pombe vacuolar carboxypeptidase Y in Saccharomyces cerevisiae. Curr Genet 42:252–259
Tanida I, Hasegawa A, Iida H, Ohya Y, Anraku Y (1995) Cooperation of calcineurin and vacuolar H+-ATPase in intracellular Ca2+ homeostasis of yeast cells. J Biol Chem 270:10113–10119
Toyama R, Goldstein DJ, Schlegel R, Dhar R (1991) A genomic sequence of the Schizosaccharomyces pombe 16 kDa vacuolar H+-ATPase. Yeast 7:989–991
Umemoto N, Yoshihisa T, Hiratat R, Anraku Y (1990) Roles of the VMA3 gene product, subunit c of the vacuolar membrane H+-ATPase on vacuolar acidification and protein transport. A study with VMA3 -disrupted mutants of Saccharomyces cerevisiae. J Biol Chem 265:18447–18453
Vida TA, Emr SD (1995) A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast. J. Cell Biol. 128:779–792
Whitacre JL, Davis DA, Toenjes KA, Brower SM, Adams AEM (2001) Generation of an isogenic collection of yeast actin mutants and identification of three interrelated phenotypes. Genetics 157:533–543
Xie Y, Coukell MB, Gombos Z (1996) Antisense RNA inhibition of the putative vacuolar H+-ATPase proteolipid of Dictyostelium reduces intracellular Ca2+ transport and cell viability. J Cell Sci 109:489–497
Yamamoto A, DeWald DB, Boronenkov IV, Anderson RA, Emr SD, Koshland D (1995) Novel PI(4)P 5-kinase homologue, Fab1p, essential for normal vacuole function and morphology in yeast. Mol Biol Cell 6:525–539
Yamashiro CT, Kane PM, Wolczyk DF, Preston RA, Stevens TH (1990) Role of vacuolar acidification in protein sorting and zymogen activation: a genetic analysis of the yeast vacuolar proton-translocating ATPase. Mol Cell Biol 10:3737–3749
Acknowledgements
We are grateful to Dr. Yuko Giga-Hama for providing the S. pombe strain and to Dr. Taro Nakamura for providing the plasmids. This work was partly supported by the Project for Development of a Technological Infrastructure for Industrial Bioprocesses on R&D of New Industrial Science and Technology Frontiers by the Ministry of Economics, Trade and Industry (METI) and by a fellowship from the New Energy and Industrial Technology Development Organization (NEDO)
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Iwaki, T., Goa, T., Tanaka, N. et al. Characterization of Schizosaccharomyces pombe mutants defective in vacuolar acidification and protein sorting. Mol Genet Genomics 271, 197–207 (2004). https://doi.org/10.1007/s00438-003-0971-7
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DOI: https://doi.org/10.1007/s00438-003-0971-7