Abstract
In plasma membranes, most glycosylphosphatidylinositol-anchored proteins (GPI proteins) would be associated with ordered microdomains enriched in sphingolipids and cholesterol. Debates on the composition and the nano- or mesoscales organization of these membrane domains are still opened. This complexity of biomembranes explains the use, in the recent years, of both model systems and atomic force microscopy (AFM) approaches to better characterize GPI proteins/membranes interactions. So far, the studies have mainly been focused on alkaline phosphatases of intestinal (BIAP) or placental (PLAP) origins reconstituted in model systems. The data show that GPI-anchored alkaline phosphatases (AP-GPI) molecules inserted in supported membranes can be easily imaged by AFM, in physiological buffer. They are generally observed in the most ordered domains of model membranes under phase separation, i.e. presenting both fluid and ordered domains. This direct access to the membrane structure at a mesoscopic scale allows establishing the GPI protein induced changes in microdomains size. It provides direct evidence for the temperature-dependent distribution of a GPI protein between fluid and ordered membrane domains. Origins of reported differences in the behavior of BIAP and PLAP are discussed. Finally, advantages and limits of AFM in the study of GPI proteins/membrane domains interactions are presented in this review.
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Introduction
Glycosylphosphatidylinositol-anchored proteins (GPI proteins) are eukaryotic exoplasmic membrane proteins that play very diverse biological functions including hydrolytic enzyme activity, transmembrane signaling, intracellular sorting and cell adhesion interaction [32, 62, 66]. Besides these biological functions, GPI proteins such as alkaline phosphatases (AP-GPI), 5′-nucleotidase, dipeptidase, aminopeptidase P, have been used primarily as markers of plasma membranes during their purification procedure [6, 28, 96]. Later, most of GPI proteins were found to be resistant to Triton X-100 solubilization at low temperature in kidney brush border membranes, whereas transmembrane enzymes were solubilized [44]. Similar observations were done on stably transfected MDCK strain II cells expressing the GPI human placental alkaline phosphatase (PLAP). The same experiments also revealed that the lipid composition of the low density, PLAP-enriched, Triton X-100 insoluble fraction had a molar ratio of glycerophospholipid to sphingolipid to cholesterol (Chl) of about 1:1:1 [11]. This ratio is close to the composition of the apical plasma membrane of renal [16, 60] and intestinal [7, 25, 33] epithelial cells. It is worth noting that because sphingolipids are essentially present on the outer plasma membrane leaflet, the GPI proteins should be initially localized in sphingolipids/Chl domains, with the glycerolipids occupying the inner membrane leaflet. Subsequently, detergent resistant plasma membrane fractions (DRMs) were isolated from a wide variety of eukaryotic cells [12]. This gave a new impulse to the hypothesis of the heterogeneous lateral organization of membrane constituents proposed in the mid 1970s to early 1980s [53, 71]. For epithelia, lateral heterogeneity was considered to account for the unusual physical state properties of intestinal [8] and renal [57] cells plasma membranes. For some time, DRMs were thought to correspond to microdomains present in the native plasma membrane [1]. Sphingolipids- and Chl-enriched microdomains were proposed to form “rafts” [85], a category of small (10–200 nm), heterogeneous, highly dynamic domains that compartmentalize cellular processes [74] and are involved in a variety of functions including signal transduction and membrane trafficking [27, 43]. Consequently, GPI proteins were promoted rafts markers. Like DRMs, rafts are expected to be in the liquid ordered phase (l o), a phase characterized by ordered phospholipids chains. However, in contrast to the highly ordered \(L_{\beta '} \) gel phase, the lateral and rotational diffusion rates of l o phase compare to those of the \(L_\alpha \) fluid, liquid-disordered (l d) phase [81, 93]. Interactions between Chl and other membrane lipid chains are determinant in l o formation. Immiscibility of the different phases (l o vs l d, \(L_{\beta '} \)vs l o or l d) would be responsible for the phase separation and the formation of lipid dependent microdomains in biomembranes. Natural sphingomyelin (SM) and glycosphingolipids are more saturated and contain longer acyl chains than glycerophospholipids [95]. This results in higher gel to fluid transition temperatures. For many of these sphingolipids, the upper end of the gel to fluid transition is above physiological temperature. This means that a fraction of the lipid is still in the gel phase at physiological temperature. Because l o and l d become miscible at a critical temperature above the main gel to fluid phase transition temperature [47], one expect l o–l d phase coalescence to occur at higher temperatures for SM/Chl than for glycerophospholipids/Chl microdomains [80].
It seems reasonable now to consider that DRMs should not be identified with rafts [61], whose lifetime and size limits remain a matter of debates [42, 48]. Whereas there is now little doubt, if any, about the heterogeneous lateral organization of biomembranes, in situ characterization of microdomains depends on the highly preferential, if not exclusive, association of markers with a category of domains. How atomic force microscopy (AFM) can contribute to the understanding of a marker association with microdomains will be presented in this review. Choosing GPI-alkaline phosphatases as representative of raft-marker GPI proteins, we will discuss what kind of unique information AFM can provide and the actual limitations of the technique. We will also discuss the predictable consequences for biomembranes organization of the AFM findings on model systems.
AFM detection of AP-GPI in model membranes
Mammalian alkaline phosphatases (EC 3.1.3.1) are widely distributed enzymes that catalyze nonspecific hydrolysis of phosphate monoesters in an alkaline environment. They are expressed by different genes in intestine, in placenta and bones, and liver and kidneys [62]. They are highly polymorphic dimeric proteins made of homodimers, each monomer having a GPI anchor linked to the C-terminal group. X-ray resolved structure of PLAP indicates that the dimer adopts a prolate ellipsoid shape with a great axis of ~10 nm parallel to the membrane surface and minor axis of ~5 nm corresponding to the extramembranous height of the molecule [56]. The bovine intestinal alkaline phosphatase (BIAP) presents about 90% sequence similarity with PLAP and is made of two identical monomers containing 486 amino acids and one GPI anchor. The apparent molecular weight from electrophoresis determination is about 130 kDa [78]. This size, associated with the possibility to purify reasonable amount of eukaryotic protein from a single source, makes AP-GPI attractive candidates for studying GPI-anchored proteins/model membrane domains interactions by AFM. One has to remind that, under favorable conditions, this technique allows to reach a ~1 Ǻ vertical and 5 Ǻ lateral resolution on soft mater under liquid [29, 83].
Most of the available biomimetic systems like Langmuir–Blodgett films (LB), supported lipid bilayers (SLBs), large (LUVs), and giant unilamellar vesicles (GUVs) have been used to better characterize the formation of in-plane lipid-dependent microdomains and lipid/AP-GPI interactions in membranes [15, 17, 21, 52, 55, 67, 78].
Like other GPI proteins including acetylcholinesterase, GPI-murine B7-1 and B7-2 [76], variant surface glycoprotein (VSG) from Trypanosoma brucei, GPI-human decay accelerating factor [19, 70], and GPI-green fluorescent protein (GFP-GPI) [59], PLAP added to the medium spontaneously inserts into biomembranes [54]. Osseous plate AP-GPI and PLAP can also spontaneously insert into preformed liposomes [15, 54]. Compared with reconstitution procedures, where the protein is added before or during the bilayer formation, this process presents the important advantage to insure an exclusive right side outside orientation of the AP-GPI at the external leaflet of the membrane.
In model systems, AFM allows to image lipid domains from the nano- to the microscopic scale, giving direct access to the mesoscopic scale where biomembrane microdomains essentially take place. Existence, shape, and size of lipid domains in LB films and SLBs are generally detected using difference in thickness and/or mechanical properties between immiscible phases [20, 26, 51, 69, 91]. Schematically, one expect the thickness and the lipid order parameter of a lipid bilayer to follow the sequence gel > l o > l d [87]. An example of temperature-dependent existence of (gel/l o)–l d domains coexistence detected by height difference between phases is illustrated in Fig. 1. Figure 1 shows the evolution between room temperature and 50°C of the topography of a model raft, i.e. a model system whose lipid composition resembles that expected for those biomembranes lipid microdomains enriched in sphingolipids. Lighter protruding ordered domains were observed up to 35°C (Fig. 1a–c) but disappeared from 40°C (Fig. 1d–f), in accordance with the differential scanning calorimetry thermogram (Fig. 1g).
Direct AFM detection of the AP-GPI presence on SLBs can be obtained upon addition of BIAP in the buffer bathing preformed ordered-fluid phase separated bilayers [40, 68]. This is illustrated in Fig. 2 for a SLB made of an equimolar mixture of dioleoylphosphatidylcholine (DOPC), a phosphatidylcholine bearing two monounsaturated C18:1 acyl chains in the fluid state at room temperature, and of dipalmitoylphosphatidylcholine (DPPC), a phosphatidylcholine with two saturated C16:0 acyl chains in the ordered (gel) state under the same condition. AFM allowed to image the progressive appearance of bright dots ~12 to 100 nm in diameter (Fig. 2b,c), essentially protruding from the surface of the lightest, i.e. the ordered DPPC-enriched membrane domains [67]. The minimal size of bright dots was compatible with structural data [56] and the time course of their visualization at the membrane surface agreed with previous work done on direct incorporation of AP-GPI into liposomes [15]. The presence of larger spots at the membrane surface also gave direct support for BIAP having a marked tendency to form clusters, a hypothesis formulated from indirect biochemical [13] and physicochemical [78] evidences. It is worth noting that pretreatment of BIAP with phosphatidylinositol-specific phospholipase C to remove the GPI anchor prevented the imaging of the protein at the SLBs surface. It indicated that SLB domains/GPI anchor hydrophobic interactions played an essential role in BIAP localization [67]. AFM data were recently reported on adsorption of both the anchor-containing and the phospholipase C solubilized form of the rat osseous plate alkaline phosphatase at the surface of LB films made of dimyristoylphosphatidic acid [17]. Although there are no negatively charged phospholipids at the surface of healthy eukaryotic cells, this suggested that electrostatic interactions could also modulate GPI proteins/membranes interactions.
Direct visualization of AP-GPI dimers and aggregates inserted in membrane domains was reported both for samples where the protein was added after the SLBs formation (SLBas) and for samples in which the protein was inserted during the formation of the liposomes (SLBbs), before the SLBs formation by fusion of the protein-containing vesicles [18, 40, 68, 82]. Two categories of SLBs under fluid-ordered phase separation have been examined by AFM. The first consisted of fluid (l d)-gel phases binary mixtures. The second regrouped ternary mixtures of composition closer to that expected for rafts microdomains, with l o–l d or (gel/l o)–l d domains coexistence assumed to take place, according to the phase diagrams of vesicles [22, 89].
Interaction of AP-GPI with ordered gel domains
Starting with fluid (l d)-gel phases binary mixtures, SLBas experiments with BIAP were done, besides DOPC/DPPC (1:1 mol:mol), on DOPC/bovine brain sphingomyelin (SM) (DOPC/SM, 1:1 mol:mol) and palmitoyloleoylphosphatidylcholine (POPC)/SM (POPC/SM, 1:1 mol:mol). POPC is a major natural phosphatidylcholine species of biomembranes containing one C 16:0 and one C 18:1 acyl chains. Accordingly, this last mixture is the most physiologically relevant [38]. For all samples, AFM showed that BIAP spontaneously inserted in the gel, i.e. highly ordered, phase of bilayers [67, 68, 40]. This spontaneous BIAP insertion into SLBs was in accordance with the observations reported for the insertion of various GPI proteins into biomembranes (see above). However, it contrasted with the results obtained on Langmuir monolayers: for films made of pure phosphatidylcholine (PC) species, the penetration process of the GPI anchor into the hydrophobic core from an aqueous phase only occurred at surface pressures lower than 15–22 mN m−1 [55, 79], significantly below the 35 mN m−1 value estimated for biomembranes [23]. The absence of phase separation in Langmuir monolayers experiments might account for the apparent discrepancy between the results. The presence of both line tension between the fluid and ordered domains and packing defects or local heterogeneity in the ordered domains [36, 14] likely favors BIAP insertion in both SLBs and biomembranes [75]. Figure 2 is in good accordance with this hypothesis: time dependent experiments showed that the first BIAP dimers were detected at the border of the fluid-gel domains. In addition, BIAP was found to preferentially interact with pure DPPC SLBs made by LB deposition at 40 mN m−1 and presenting defects [21]. The second original information provided by AFM analysis of these samples, through the direct determination of domains area, was that BIAP insertion was associated with a net transfer of phospholipids between fluid and gel domains. The same series of experiments strongly suggested that BIAP interacted with the most ordered lipid species in samples presenting gel–gel phase separation. The direction of the phospholipids net transfer either from the fluid to the gel phase or the opposite most likely depended in part on the matching between the hydrophobic thickness of the BIAP acyl chains and the phospholipids constituting the two phases. It was also affected by the gradient of lipid order at the interface of the fluid and gel phases. To summarize, these data strongly suggested that the GPI anchor might contribute to the formation of its most appropriate membrane environment in terms of hydrophobic length and lipid order parameter [40]. Like for BIAP, PLAP has been visualized in the gel SM enriched ordered phase in SLBbs made of DOPC/SM [82].
Interaction of AP-GPI with model rafts
Both types of SLBs have also been used to examine the interactions of AP-GPI with model rafts, i.e. ternary mixtures containing an unsaturated PC, sphingomyelin, and variable concentrations of cholesterol. For PLAP introduced in the liposomes before fusion with the mica (SLBbs), the protein was visualized practically exclusively (92%) in the SM/Chl enriched l o domains of DOPC/SM/Chl (1:1:1, mol:mol) [82]. A similar conclusion was reached for BIAP inserted in l o domains of DOPC/SM/Chl (1:1:0.35, mol:mol) SLBas [68]. The presence of Chl in the lipid mixture was shown to markedly increase the quantitative insertion of BIAP. It also resulted in a homogeneous distribution of protein dimers in the ordered domains. Such homogeneous protein distribution was in accordance with the existence of a lateral diffusion only modestly reduced in l o phase as compared to the l d phase [2]. This effect of Chl in enhancing the insertion of BIAP, which also resulted in an increase of the ordered domains size, was further demonstrated by adding Chl-loaded methyl-β-cyclodextrin complexes to DOPC/SM bilayers incubated with the protein [68]. As mentioned earlier, POPC/SM/Chl ternary mixtures are more relevant to the composition of biomembrane domains than DOPC/SM/Chl. Recent experiments on BIAP interaction with SLBas made of POPC/SM/Chl (1:1:0.35, mol:mol) have shown that, at room temperature, the spontaneously inserted protein was essentially, if not exclusively, visualized in the l o (gel/l o) ordered domains of the bilayer [39]. Time-dependent temperature experiment, however, demonstrated that this distribution of proteins, in the ordered phases for temperatures below ~30°C, was altered at higher temperatures. For a temperature range between ~30 and 40°C, including the physiological temperature, BIAP was visualized both in the l o and l d phases (Fig. 3). Few small smooth domains devoid of BIAP were also observed in the l d phase. According to the data obtained earlier on binary gel/l d bilayers, redistribution of BIAP between (gel/l o) ordered and l d fluid phases strongly suggested that the lipid order gradient between phases was reduced upon increasing the temperature. This could be due to the presence of a higher Chl concentration in the membrane fluid phase which would agree with the recently reported decrease in the affinity of Chl to SM relative to POPC when raising the temperature [88]. On the other hand, existence of small smooth domains without BIAP in the fluid phase strongly suggests that Chl and SM molecules were not totally homogeneously distributed in the “fluid” phase.
AFM visualization of BIAP in the fluid phase of model rafts established the redistribution of a GPI-anchored protein between ordered and fluid domains as a function of temperature. This visualization also demonstrated that the presence of AP-GPI in the fluid l d phase could be shown by AFM, at least under experimental conditions where a large amount of proteins was incorporated in the samples. Moreover, the relative height of the protein above the bilayer interface, which is function of its packing in the membrane, was about two times less on the fluid than on the ordered phase. This strongly suggested that even at the higher temperature where the lateral diffusion is the highest, the percentage of BIAP in the fluid phase remained significantly lower than in the gel phase, a normal situation for a raft marker. These results differ from those recently obtained with PLAP in which, using SLBbs, only one-fourth of the total AP-GPI was found, with significant aggregation, in the l o domains at room temperature [18]. The conclusions of this last paper, in which fluorescence correlation spectroscopy and confocal fluorescence were also used, also differ from the previous one on PLAP [82]. They were however close to those obtained by the same group on GUVs using fluorescence markers [52]. Keeping in mind that PLAP was found to be 95 and 99% detergent-insoluble at the plasma membrane [10] and in model rafts liposomes [84], respectively, these data raise interesting questions on the different results on PLAP, the difference between PLAP and BIAP behaviors and the respective information provided by fluorescence and AFM.
First, concerning the apparent variability in PLAP results, it is worth noting that brain-SM rather than synthetic stearoyl-SM was used in the initial experiments. As discussed above, this is a first parameter which could alter the AP-GPI partition between ordered and fluid phases. Besides the presence of fluorescent probes whose effect on phase boundaries cannot be excluded, even for concentrations as low as 0.01% [90], there are other parameters to consider. For example, the different procedures followed to insert PLAP in the bilayers and the control of PLAP sidedness, first in the vesicles [73, 92], then in the SLBbs could affect the results. This also applies to the behaviour of PLAP eventually present in the SLBbs proximal monolayer that faced the mica. The interaction between the proximal leaflet and the support distant of ~2–3 nm in buffer [35, 50] is enhanced by adding calcium to the buffer [5]. In what concerns BIAP, for which spontaneous insertion insured an exclusive protein orientation on the distal leaflet, its preferential distribution in the most ordered phases of the mixtures tested was most likely a consequence of the hydrophobic anchor composition. BIAP contains only fatty acid esters, with a remarkably high content of octadecanoate and hexadecanoate saturated fatty acids. Moreover, a significant fraction of the GPI anchor contains an additional long-chain fatty acid, possibly inositol-linked [13]. On the other hand, the GPI membrane anchor of human PLAP is made of 1-O-alkyl-2-O-acylglycerol that contains a significant amount of unsaturated C 18:1 [77], i.e. is less ordered than the intestinal enzyme.
It has been proposed that the underestimate of the PLAP present in the fluid phase was due to the slow speed of the AFM images acquisition and the higher diffusion coefficient in this phase [18]. This certainly limits the accuracy of the determination of a partition coefficient. However, the two to five times difference in l d vs l o lateral diffusion coefficients [2, 52] can hardly explain alone the discrepancies between PLAP results, taking into account the various scan rates and scan sizes between the different experiments. Part of the answer is perhaps contained in the data presented in Fig. 4 showing a temperature-dependent experiment with a low amount of inserted BIAP. AFM images of the SLBa at 18°C (Fig. 4a) revealed three different levels, that should correspond from the lower to the higher, to l d, l o, and gel phases, with a limited amount of BIAP inserted in this most ordered phase. Upon heating, the gel phase first decreased in size (Fig. 4b), then disappeared (Fig. 4c), and BIAP could not be any longer localized either in the l o or in the l d phases. This is in contrast with what was previously reported for high protein concentrations. Such an observation supported the view that the high diffusion coefficients in the liquid phases can limit the possibility to image proteins [18] when they are present in low amounts. Finally, differences between fluorescence and AFM data might be related to the pronounced effect of scanning forces on AP-GPI visualization. As recently reported [40], the use of scanning forces higher than 300 pN resulted in the extraction of a large number of BIAP molecules from the ordered domains (Fig. 5). Such an effect is in accordance with the low forces required to extract phospholipids [30, 58], the recovering protein anchored to the membrane via a myristic acid [24] and BIAP [21] from a bilayer. The extraction force required might also differ between fluid and ordered phases and, in our experience, could occur in both contact and oscillating modes.
Strengths and weaknesses of AFM in the study of AP-GPI–membrane domains interactions
To conclude this part, the example of AP-GPI [9] illustrates well the strengths and weaknesses of AFM. By giving direct access to the imaging of proteins in membrane domains, the AFM studies have demonstrated that BIAP spontaneously inserted in ordered domains of phase-separated membranes and that this insertion could be associated with a net transfer of lipids whose direction depends on the lipid order gradient. They have also shown that the protein partition between fluid and ordered membrane phases is affected by temperature. This reinforces the questioning about the physiological relevance of DRMs prepared at low temperature [61]. The results also strongly suggest that the length and the degree of saturation of the hydrophobic part of the GPI anchor play a crucial role on the distribution of GPI proteins between fluid and ordered membranes domains. In accordance with this hypothesis, a recent AFM study using model rafts made with sphingomyelin of various chain lengths demonstrates that acyl chain length hydrophobic mismatch influences the distribution of a GPI-anchored form of angiotensin converting enzyme and membrane dipeptidase GPI proteins between fluid and ordered domains [34]. On the other hand, the time required to acquire one image (~1–5 min for commercial equipments) actually precludes the quantitative determination of fluid-ordered partition coefficient for diluted, rapidly diffusing molecules. New high-speed AFM equipment [3, 46] should overcome this limit.
Predictable consequences for biomembranes
Analysis of the lipid anchor reveals large variations in the composition and linkages of the diacyl- or alkyl-acylglycerol moiety of GPI proteins [31, 62, 63]. For instance, the saturated acyl chains of variant surface glycoprotein VSG, Thy-1, renal membrane dipeptidase, and human folate binding protein contain 14, 16, 18, and 22 carbons, respectively [9, 62, 63]. As pointed out in a recent review, we still know very little concerning the structures of side chains and lipid moieties on the large number of GPI proteins [66]. Protein-specific GPI anchors have been described within Saccharomyces cerevisiae [31]. Furthermore, recent data strongly suggest they could also play a determinant role in mammalian cells in the distribution of GPI proteins between subset of microdomains [72]. Fatty acid remodeling of the GPI anchors, required for their association with membrane ordered domains [45, 65], could be part of the process leading to the synthesis of these specific anchors. In accordance with this view, the differential insolubility of various GPI proteins into various non-ionic detergents [86] suggests that different GPI proteins localize in different categories of microdomains. In the same line, it was reported that functionally different GPI proteins are organized in different domains on the neuronal surface [64] as well as on the surface of CHO cells [94]. Similarly, two recombinant GPI-anchored green fluorescent proteins that differ in their GPI anchor have distinct membrane microdomain localization [59]. In cells, distinct lipid microdomains were also characterized on the basis of their relative enrichment in GM1 and GM3 gangliosides [41, 49]. AFM as well as fluorescence experiments on GUV have demonstrated that simple binary or ternary mixtures containing natural SM can adopt different shapes [4] and eventually undergo gel–gel phase separation [40, 37], a property linked to the large difference in the length of their constitutive acyl chains. Taken together, these data strongly suggest that, within a membrane, subclasses of different GPI proteins can co-localize in subsets of microdomains enriched in sphingolipids and cholesterol. The length and lipid order of the GPI anchor are one of the determinant properties of the GPI protein subclasses. GPI protein behavior and partition coefficient between fluid and ordered domains would then be function of the GPI subclasses they belong to. AFM and fluorescence experiments on model membranes made of lipids of variable compositions and containing simultaneously different GPI proteins would certainly provide a better understanding of biomembranes organization.
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Giocondi, MC., Seantier, B., Dosset, P. et al. Characterizing the interactions between GPI-anchored alkaline phosphatases and membrane domains by AFM. Pflugers Arch - Eur J Physiol 456, 179–188 (2008). https://doi.org/10.1007/s00424-007-0409-x
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DOI: https://doi.org/10.1007/s00424-007-0409-x