Locally accelerated growth is part of the innate immune response and repair mechanisms in reef-building corals as detected by green fluorescent protein (GFP)-like pigments
Homologs of the green fluorescent protein (GFP) are a prevalent group of host pigments responsible for the green, red and purple-blue colours of many reef-building corals. They have been suggested to contribute to the striking coloration changes of different corals species in response to wounding and infestation with epibionts/parasites. In order to elucidate the physiological processes underlying the potentially disease-related colour changes, we have analysed spatial and temporal expression patterns of GFP-like proteins and other biomarkers in corals from the Red Sea, the Arabian/Persian Gulf and Fiji both in their natural habitat and under specific laboratory conditions. The expression of distinct GFP-like proteins and the growth marker proliferating cell nuclear antigen was upregulated in growing branch tips and margins of healthy coral colonies as well as in disturbed colony parts. Furthermore, phenoloxidase activity increased in these proliferating tissues. It is thus demonstrated that locally accelerated growth is part of the innate immune response and repair mechanisms in reef-building corals and, moreover, these processes can be detected utilizing the excellent biomarker properties of GFP-like proteins. Finally, the results of this work suggest an additional vulnerability of corals in predicted future scenarios of increased ocean acidification, warming and eutrophication that are anticipated to reduce coral growth capacity.
KeywordsGreen fluorescent protein (GFP)Coral diseaseImmune responseClimate changeCoral parasiteCoral bleaching
Shallow water coral reefs are among the most important centres of marine biodiversity providing invaluable ecosystem services to millions of people. A multiplicity of stressors such as global warming, ocean acidification, rising pollution and overfishing might result in a dramatic loss of coral reefs within this century (Hughes et al. 2003; Hoegh-Guldberg et al. 2007). Furthermore, several coral diseases have been described which represent a significant threat to coral reef survival (Rosenberg and Loya 2004). Most coral diseases are associated with deviations from the normal visual appearance, and hence their names are often inspired by the characteristic colour change. In some cases, the pigments of involved pathogens contribute to the alteration in the coral colour (Cooney et al. 2002; Rosenberg and Loya 2004), whereas in others, the loss of coral tissue and/or the symbiotic algae (zooxanthellae) is responsible for the colour change (Gladfelter 1982; Rosenberg and Loya 2004). GFP-like proteins were proposed to cause the colour changes of corals in response to wounding and infestation with epibionts referred to as the pink-blue spot syndrome (Bongiorni and Rinkevich 2005). While some authors interpret the pink/blue pigmentation of Porites sp. and Acropora sp. as a local response to stress (Bongiorni and Rinkevich 2005; Beeden et al. 2008; Benzoni et al. 2010), others link them to coral diseases (e.g. the pink-line syndrome of P. lutea; Ravindran and Raghukumar 2006) or the Porites trematodiasis (PorTrem; Aeby et al. 2011). Finally, the non-normal purple and red pigmentation has been associated with potential immune responses of Acropora millepora and Porites sp. (Palmer et al. 2008).
The pigments responsible for the pink-blue pigmentation of reef coral response belong to the family of GFP-like proteins (Dove et al. 2001; Wiedenmann et al. 2004b, 2009; Oswald et al. 2007; Alieva et al. 2008; D’Angelo et al. 2008). Based on their photophysical properties, they can be divided into two major groups: the fluorescent proteins (FPs), emitting photons in the spectral range from cyan to red upon stimulation with light of suitable wavelengths, and the non-fluorescent chromoproteins (CPs), which display bright purple to blue colours (Prescott et al. 2003; Alieva et al. 2008; Nienhaus and Wiedenmann 2009). The slow turnover (half-life ~3 weeks) associated with the stable β-can fold of GFP-like proteins facilitates the high-level accumulation in coral tissue (Leutenegger et al. 2007b; Oswald et al. 2007). GFP-like proteins are assumed to fulfil a photoprotective function in some anthozoans (Wiedenmann et al. 1999; Salih et al. 2000; Dove et al. 2001). This view is supported by the finding that expression of several FPs and CPs in reef corals is upregulated at the transcriptional levels in response to increased exposure to (blue) light (D’Angelo et al. 2008). However, results of molecular phylogenetic analyses of the protein sequences in combination with deviating regulation patterns suggest that distinct groups of GFP-like proteins might fulfil various functions among different taxonomic groups (Alieva et al. 2008; D’Angelo et al. 2008).
Fluorescent proteins (FPs) from reef corals and other anthozoans are routinely applied as markers in biomedical and pharmaceutical research applications, for instance, as reporters of gene activity in live-cell assays (Wiedenmann et al. 2004a, 2009; Kredel et al. 2009; Fuchs et al. 2010). They are favoured markers because their fluorescence can be easily detected and quantified due to the excellent signal-to-noise ratio (Wiedenmann et al. 2009).
In this study, we explored whether it is possible to utilize GFP-like proteins as intrinsic markers for diseases and stress in coral tissue by identifying physiological processes associated with potentially disease- and stress-related colour changes.
As an increased expression of GFP-like proteins is regularly found in growth zones such as apical polyps or colony edges of healthy corals (D’Angelo et al. 2008), we tested the hypothesis that the marker properties of the GFP-like proteins accumulated in disturbed areas can be exploited to correlate the pigmentation response of the pink-blue syndrome(s) of Porites sp and Acropora sp. with growth processes.
To this end, we conducted a thorough analysis of expression patterns of GFP-like proteins and the growth marker proliferating cell nuclear antigen (PCNA). The intranuclear PCNA is a well-conserved polypeptide that is synthesized mostly during the DNA synthesis phase of the cell cycle (Strzalka and Ziemienowicz 2011). Hence, it is used as growth marker in biomedical research to characterize quickly proliferating tissue, for instance, in tumours (Leonardi et al. 1992). As increased phenoloxidase (PO) activity was reported previously for pigmented coral tissue (Palmer et al. 2008), we assessed whether also PO activity might be indicative of growth zones. In our study, we focussed on four coral species to define the effects of colony morphology on the pigment and growth responses: Montipora foliosa (plate-like), Acropora pulchra/polystoma (branching) and Porites lobata (massive). To assess how common these pigment responses are among corals from different geographical regions, we studied specimens from the Red Sea, the Arabian/Persian Gulf and Fiji both in their natural habitat and under specific, controlled laboratory conditions.
Materials and methods
Porites lobata samples were collected live from 4 m depth on Saadiyat reef in Abu Dhabi, United Arab Emirates (24° 35′ 56.4″ N, 54° 25′ 17.4″ E) in May 2010 and transported to the UK for cultivation in the experimental mesocosm of the Coral Reef Laboratory of the NOCS (http://www.noc.soton.ac.uk/corals/). The corals were kept in artificial sea water (salinity 42) at 27 °C, under a light intensity of ~200 μmol photons m−2 s−1 in a 12-h light/12-h dark period. Reefs at the origin are shallow (<5 m depth) and low relief and are better described as coral carpets forming a veneer over a capstone substrate. Sea surface temperatures in this area typically range from 18 °C in the winter through 36 °C in the summer, and these reefs have been exposed to recurrent mass bleaching events in the past decade (1996, 1998, 2002, 2010) from which coral communities are continuing to recover (Burt et al. 2008, 2011).
Observations of P. lobata in situ were made on colonies in ~1–1.5 m depth in the reefs in front of the Interuniversity Institute for Marine Sciences (IUI), Eilat, Israel, in March 2010. The IUI site (29° 30′ 05″ N, 34° 55′ 02″ E) is located in the Gulf of Eilat on the Northern tip of the Red Sea. The sea surface water temperature (SST) is on the rise since 2002, and the average at 2010 was 0.6 °C higher than the previous year (Shaked and Genin 2011). Secchi depth varies between 18 and 34 m since 2004 with very little change. The average pH values varied between 8.17 and 8.25, while alkalinity has been in the range of 2.5 ± 0.05 meq kg−1 for the past three years. The currents are stable from the NE to SW with a maximum of 0.3 m s−1. The annual mixing of the upper water column with the deeper water of the Gulf of Eilat influences the availability of dissolved inorganic nutrients at the observation site. During the past 2 years, the mixing was very mild due to relatively high air temperatures during the winters. During this time, the partially degraded coral community started a slow recovery of live coral cover.
P. lobata, M. foliosa and A. pulchra collected from Fijian reefs in the regions of Galao Village (P. lobata) and Yanuca Island had been acquired through the aquaristic trade (Tropical Marine Centre, London, UK) in 2008 (M. foliosa and A. pulchra) and 2010 (P. lobata). Acropora polystoma of unconfirmed origin was purchased via the British aquaristic trade in the UK in 2008. The corals were cultured and propagated by fragmentation in the experimental mesocosm of the Coral Reef Laboratory of the NOCS. The corals were kept in artificial sea water (salinity 33) at 25 °C, under a light intensity of ~200 μmol photons m−2 s−1 in a 12-h light/12-h dark period. A detailed description of the system is given in D’Angelo and Wiedenmann (2011).
Experimental wounding and sampling
Physical stress was simulated by scratching the surface of P. lobata with the tip of a knife or by scraping off the tissue and the upper skeletal layers of replicate colonies of A. pulchra and A. polystoma. After documentation of the wounded areas, the corals were put back to their original place in the holding trays of the experimental mesocosm and left undisturbed for 3 weeks. Afterwards, the corals were photographed again and samples for biomarker analyses were harvested by removing the regenerated tissue using a scalpel. The short-term effects of wounding were documented by a time series of photographs that followed the recovery of experimentally injured A. polystoma. The images of the wound area were taken under a microscope with daylight settings and in the fluorescence mode using the GFP Plus filter set (AHF, Tübingen, Germany), immediately after inflicting damage (day 0) and after 3, 7, 10 and 14 days.
Photographs of coral fragments were taken using a digital E500 camera (Olympus, Hamburg, Germany). Daylight pictures were taken using white light illumination. Fluorescence photographs were obtained through a yellow long-pass filter (Nightsea, Andover, USA) upon exciting tissue fluorescence with a ~450-nm light source (Nightsea, Andover, USA). Details of polyps were photographed with a Leica DFC420C camera fitted to a Leica MZ10 stereomicroscope (Leica Microsystems, Wetzlar, Germany) equipped with CFP/dsRed and GFPplus filtersets (AHF, Tübingen, Germany). The blue channel information of CFP images was transferred to the green channel to match the visual appearance of the coral fluorescence.
Tissue extraction and protein purification
Host tissue extracts were prepared from three replicate colonies as described (Leutenegger et al. 2007b; Oswald et al. 2007). Total protein content was measured using the BCA method (Pierce, Thermo Fisher Scientific, Rockford, USA). GFP-like proteins were purified from the cleared extracts by size-exclusion chromatography using an Aekta Purifier (GE Healthcare, Freiburg, Germany) (Wiedenmann et al. 2002, 2004b). Absorption at the peak wavelength of the GFP-like proteins under study was recorded online during the chromatography runs. GFP-like proteins eluted with apparent molecular weight characteristic for oligomeric representatives of this protein family (Wiedenmann et al. 2002, 2004b, 2005; D’Angelo et al. 2008). Peak fractions were recovered for spectroscopic analysis.
Fluorescence spectra were measured on the animal using a Varian Cary Eclipse fluorescence spectrometer (Varian, Palo Alto, USA), equipped with a fibre optic probe as described (D’Angelo et al. 2008). Absorption spectra were recorded from cleared tissue extracts using a Cary absorption spectrometer (Varian). The peak positions of absorption and emission spectra were used to name the pigments. The abbreviation of the species name is followed by the abbreviation CP (non-fluorescent GFP-like chromoprotein) and FP (fluorescent GFP-like protein) and peak position of the absorption (CPs) or emission (FPs) spectrum. For quantification purposes, mean and standard deviation of >6 spectra from different colony areas/samples were determined. The significance of the differences in the maximum emission/absorption was evaluated by two-tailed unpaired t test or Mann–Whitney nonparametric test (apulFP483 and plobFP610) analysis using GraphPad InStat (San Diego, USA).
RNA preparation and RT-PCR
We studied the expression of PCNA in M. foliosa and A. pulchra by semi-quantitative reverse transcription polymerase chain reaction (RT-PCR). Total RNA was prepared from the growth zones (branch tips, colony margins) and from inner areas of the colonies. RNA extraction, quality control and analyses were performed as already described (D’Angelo et al. 2008). The sequence of a coral-homolog of PCNA from the EST database of A. millepora (Meyer et al. 2009) was aligned with PCNAs of higher organisms, and primers were designed against conserved regions. Fragments encoding PCNA were amplified from 500 ng cDNA using the primers: PCNA For (5′atgtttgaagcaaagcttacacaaggc3′) and PCNA Rev (5′catattcttgttctgggatcccaag3′). Transcripts of the housekeeping gene actin were amplified using the primers Actin For (5′ttgctatgttgctcttgacttcg3′) and Actin Rev (5′gatccacatctgttggaaagtagac3′). PCR conditions and normalization are described in D’Angelo et al. (2008). The intensity of every transcript fragment band was quantified and normalized to the corresponding actin band using MATLAB® (Mathworks, Natick, USA). Mean and standard deviation of four independent samples were calculated, and differences were tested for significance by two-tailed unpaired t test analysis using GraphPad InStat (San Diego, USA). DNA was extracted from the gel bands, and the fragments were cloned in E. coli with the StrataClone cloning kit (Agilent Technologies, Santa Clara, USA). Sequencing of the fragments was performed by a commercial provider (Macrogen, Seoul, Korea). Subsequently, sequences were aligned using Clustal V. PCNA sequences from A. pulchra and M. foliosa were deposited at GenBank (accession numbers: JQ648647; JQ648648).
Measurement of phenoloxidase activity
Enzymatic activity was determined in protein extracts following a modified version of the protocol by Hauton et al. (1995). First, coral tissue was removed with a scalpel and quickly homogenized in 1 ml prechilled MilliQ-water using a micropestle. Zooxanthellae and skeletal debris were removed by centrifugation (20,000 g/4 °C/10 min); 200 μl of the cleared supernatant was saved for the determination of the total protein content by the BCA method (Pierce), and 400 μl of the tissue homogenate was mixed with an equal volume of 2× sodium cacodylate buffer pH 7.0 (20 mM sodium cacodylate, 300 mM sodium chloride, 20 mM hydrated calcium chloride). All solutions were stored on ice during the experiment; 100-μl aliquots of the substrate solution (dihydroxyphenylalanine [L-dopa], 4 mg ml−1 freshly prepared in MilliQ-water) were loaded in the required number of cavities of a clear 96-well plate (TPP 96); 200-μl aliquots of the processed tissue homogenate were quickly added to each well with substrate solution; 200-μl aliquots of 1× cacodylate buffer were loaded in the parallel row as background control. The enzyme reaction was followed by measuring the absorption at 492 nm in an Fluostar Optima plate reader (BMG LABTECH, Ortenberg, Germany) at 5-min intervals. The absorption readings were background-corrected, and the enzyme activity was expressed in arbitrary units representing the increase in absorbance of the sample at 490 nm over time. The units present in the tissue homogenates were final normalized to the total protein content of the solution. Mean and standard deviation of ≥3 independent samples were calculated, and differences were tested for significance by two-tailed unpaired t test analysis, applying Welch correction in a data set with unequal variances (M. foliosa) using GraphPad InStat (San Diego, USA).
Spatial expression patterns of GFP-like proteins
Biomarkers of coral growth
To provide evidence for the hypothesis that the specific pigment signatures observed in our model corals are indicative of growing tissue, we studied the expression of the molecular growth marker PCNA. First, we amplified and sequenced a ~400-bp region of coral PCNAs from M. foliosa and A. pulchra. Even in comparison with higher organisms including humans, coral PCNAs appear to be highly conserved (Electronic Supplemental Material, ESM Fig. 1).
A previous report noted elevated levels of PO activity in strongly pigmented coral tissue (Palmer et al. 2008); therefore, we tested whether elevated PO levels might be also indicative of growing tissue. Comparing the pigmented growth zones of M. foliosa to the established tissue of the inner colony areas, we found a significant increase in PO activity in growing tissue (Fig. 2b). We note that the PO activity is independent from the degree of tissue pigmentation as an elevated activity was also found in the growing margin of a M. foliosa colour morph that lacked the high-level expression of the purple chromoprotein at the colony edges (ESM Fig. 2).
Colour changes in response to wounding
Colour change phenomena in response to the presence of epibionts
Development of biomarkers for coral growth
The alignment of amino acid sequences revealed that coral PCNAs are highly conserved even in comparison with higher organisms including humans (ESM Fig. 1). Hence, it is reasonable to assume that PCNA fulfils the same function in the dividing coral cells as it does in higher organisms, namely to act as processivity factor for DNA polymerase during replication of the chromosomes (Strzalka and Ziemienowicz 2011). As expected, the expression of PCNA was increased in growing colony parts such as the margins of M. foliosa.
Elevated PO activity levels were previously found in non-normally pigmented tissue of A. millepora and were linked to a potential immune response of corals (Palmer et al. 2008). Here, we show that a significantly increased PO activity can be found in growing colony parts such as margins or branch tips in both M. foliosa and A. pulchra. PO activity was increased not only in growth zones that showed elevated expression levels of GFP-like proteins, but also in the colony margins of the brown M. foliosa morph, which does not accumulate detectable levels of GFP-like proteins. The consistent increase in PO activity in growth zones makes this enzyme a promising biomarker of coral growth, although its function in newly formed tissue needs to be further investigated. Alternatively to providing immune protection, PO might fulfil other or additional functions in corals.
We found an increased expression of GFP-like proteins in the growth zones of coral species which was independent from the colony morphologies (plate-like vs. branching vs. massive) and consistent over a wide geographical range (P. lobata). The specific pigmentation patterns of the growth zones were correlated with an enhanced expression of PCNA and increased PO activity. Therefore, distinct GFP-like proteins are suitable to identify areas of growth and accelerated cell proliferation. They are particularly powerful as biomarkers as they can be quickly identified and quantified by non-invasive optical techniques. However, the types of GFP-like proteins that are upregulated in the growth zones might vary between some species, and the specific FP/CP biomarker pattern needs to be established for each species and reef area under study.
Corals and other anthozoans exhibit pronounced colour polymorphisms that result from differences in the maximal expression level of GFP-like proteins (Field et al. 2006; Leutenegger et al. 2007b; Oswald et al. 2007). These colour polymorphisms can also affect the growth zones as demonstrated by our analysis of the brown morph of M. foliosa with non-pigmented growth margins, indicating that a high-level expression of GFP-like proteins is not a functional prerequisite for growth.
However, the lack of high-level expression in some corals does not seriously affect applicability of the approach to use GFP-like proteins as intrinsic biomarkers as the great majority of corals express fluorescent pigments (Salih et al. 2000). Thus, a plethora of species for which the modulation of FP/CP expression patterns could be established might potentially be utilized as indicator species for certain physiological processes.
In line with previous studies, zooxanthellae were present only in very low numbers or absent in the pigmented colony tips or margins (Fang et al. 1989; D’Angelo et al. 2008). In the growth zones, the weak absorption of the incident light by the low amounts of photosynthetic zooxanthellae pigments results in an increased reflection by the skeleton. The resulting amplification of the internal light intensity in the coral tissue (Terán et al. 2010) presumably induces a light-driven upregulation of GFP-like protein genes (D’Angelo et al. 2008). We hypothesize that the strong accumulation of GFP-like proteins in the growth zones provides enhanced photoprotection for zooxanthellae that need to colonize areas exposed to increased levels of light stress.
Application of biomarkers to study colour anomalies in corals
We tested whether the pink/blue spot syndrome (Bongiorni and Rinkevich 2005), which is often observed among Red Sea corals, for instance, in response to wounding, might be indicative of growth processes. Indeed, in A. pulchra, the newly regenerated tissue in the area of experimental wounding showed an increased expression of apulCP584 in the coenosarc and of apulFP483 in the polyps, the expression pattern typical for tissue of growing branch tips in this species. Together with significantly increased PCNA expression and elevated PO activity, our data suggest that the non-normal pigmentation of the pink/blue spot syndrome is indicative of increased cell proliferation associated with tissue regeneration. The regenerating areas of experimentally damaged P. lobata also showed an increased accumulation of a GFP-like protein (plobFP610) that is otherwise found in the growth margins of the colonies, suggesting that the pigmentation response can be found over a broad taxonomic range. The conspicuous pink coloration of the healing edges in Porites sp. recovering after experimental injury in the field further underlined the universal character of this response (van Woesik 1998). Taken together, the comparison of expression patterns of GFP-like proteins between growth zones and unusually pigmented areas elsewhere in the colony enables the identification of regions of increased cell proliferation and tissue growth. In agreement with the previous interpretations of comparable colour changes in reef corals (Bongiorni and Rinkevich 2005; Beeden et al. 2008), our data show that the pink/blue spot syndrome represents a response of healthy corals to local challenges.
Locally accelerated growth as part of the corals’ innate immune response
Epibionts such Spirobranchus sp. or vermetid snails induce the expression of growth-specific patterns of GFP-like proteins in P. lobata, A. pulchra and M. foliosa, indicating that the presence of the xenobiont accelerates the growth rates of the surrounding coral tissue. Assuming a quantitative relationship between the growth-specific expression of GFP-like proteins and the proliferation rate of the tissue, the strongly increased fluorescence suggests that the presence of foreign organisms in P. lobata results in growth rates that exceed those in the regular growth zones such as the colony margins.
The accelerated growth in the presence of foreign biological material represents a novel component of the innate immune response of reef corals in which the animals try to neutralize potentially dangerous xenobionts by overgrowing them. Encapsulation is a common part of the cellular immune response in arthropods (Gillespie et al. 1997) during which non-self particles are recognized and engulfed in a capsule of aggregating hemocytes. The encapsulation response of corals can be viewed as an analogous process at the macroscopic scale. This process explains the “swelling” of highly pigmented Porites tissue in contact with Coralliophila sp. or the formation of nodules around encysted trematodes (Oren et al. 1998; Aeby 2003) as attempts of the coral to neutralize xenobionts by encapsulation (ESM Fig. 6).
Implications for coral reef monitoring and survival
The future of coral reefs is strongly dependent on management strategies that can promote their recovery and resilience. The success of these efforts will markedly rely on the identification of particularly vulnerable areas or regions affected by high levels of stress. (Marshall and Schuttenberg 2006). The spectral analysis of fluorescence signatures of indicator corals represents a non-invasive, fast and low cost method to assess stress levels in coral reef communities. Using specific GFP-like proteins as biomarkers, we identified locally accelerated growth as part of the corals’ innate immune response that aims to neutralize xenobionts by encapsulation. Furthermore, unusual host pigmentation can be indicative of tissue regeneration processes. In the context of coral reef monitoring, these colour changes can be used as indicators of mechanical stress/damage inflicted, for instance, by swimmers or divers or give an indication of the load of epibionts/parasites (Bongiorni and Rinkevich 2005). The detailed characterization of the specific response of coral pigmentation to perturbations provided here will help to establish coral host colour as a cumulative indicator of physiological processes.
A downregulation of particular FP-encoding transcripts was previously reported, for instance, in response to heat stress, strong irradiation, bleaching and translocation (Dove et al. 2006; Leutenegger et al. 2007a; D’Angelo et al. 2008; Bay et al. 2009). The distinct response of several FP genes to various changes in the environmental conditions suggests that further biomarker assays can be developed that employ these pigments as the urgently needed intrinsic markers of coral health (D’Angelo et al. 2008).
Acidification, warming and eutrophication of the oceans will likely slow down coral growth rates in the future (Hoegh-Guldberg et al. 2007). This might result in a reduced capability of the corals to defend themselves against xenobiont colonization, yet another potentially detrimental consequence of altered environmental conditions on coral reefs.
The study was funded by NERC (NE/I01683X/1 & NE/I012648/1 to JW; studentship to EGS), DFG (Wi1990/2-1 to JW) and ASSEMBLE (to JW & DT). Our appreciation is extended to A. Al-Hemeri of the UAE Federal Environment Agency and A. Al-Cibahy of the Environment Agency of Abu Dhabi for provision of CITES export permits (No. 09FEA555) for UAE corals. We are grateful to staff and students of Interuniversity Institute for Marine Science (Eilat) for field work support and to Dr. Chris Hauton (NOCS) for discussions about the phenoloxidase assays. We acknowledge Tropical Marine Centre (London, UK) and Tropic Marine (Wartenberg, Germany) for sponsoring of the Coral Reef Laboratory at NOCS.
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