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Altererythrobacter estronivorus sp. nov., an Estrogen-Degrading Strain Isolated from Yundang Lagoon of Xiamen City in China

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Abstract

A novel gram-negative, non-spore-forming, mobile, estrogen-degrading strain, MH-B5T, was isolated from Yundang Lagoon in Xiamen city of China. Growth of this strain occurred between 4 and 40 °C (optimum at 35 °C), pH 5.5–10.0 (7.5), 0.0–7 % NaCl (1–2 %). Phylogenetic analysis based on 16S rRNA gene sequence showed that strain MH-B5T belonged to the genus Altererythrobacter family Erythrobacteraceae, showing the highest sequence similarity (96.6 %) to Altererythrobacter xinjiangensis S3-63T. The dominant cellular fatty acid was C18:1 ω7c and/or C18:1 ω6c (57.98 %). The major respiratory quinone was ubiquinone 10, and major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, sphingoglycolipid, phospholipid, and phosphatidylcholine. Strain MH-B5T did not contain bacteriochlorophyll a. The draft genome sequence of strain MH-B5T comprised about 3.67 Mb, with an average G+C content of 60 mol%. On the basis of data from its morphology, chemotaxonomy, 16S rRNA gene sequence and genome sequence, strain MH-B5T represents a novel species, for which the name Altererythrobacter estronivorus sp. nov., is proposed. The type strain is MH-B5T (=CCTCC AB2012025T=DSM 25986T).

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References

  1. Chen C, Lu Y, Hong J, Ye M, Wang Y, Lu H (2010) Metal and metalloid contaminant availability in Yundang Lagoon sediments, Xiamen Bay, China, after 20 years continuous rehabilitation. J Hazard Mater 175:1048–1055

    Article  CAS  PubMed  Google Scholar 

  2. Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London

    Google Scholar 

  3. Delcher AL, Bratke KA, Powers EC, Salzberg SL (2007) Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673–679

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Fitch WM (1971) Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416

    Article  Google Scholar 

  5. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62(Pt 3):716–721

    Article  CAS  PubMed  Google Scholar 

  6. Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge

    Book  Google Scholar 

  7. Klein S, Lorenzo C, Hoffmann S, Walther JM, Storbeck S, Piekarski T, Tindall BJ, Wray V, Nimtz M, Moser J (2009) Adaptation of Pseudomonas aeruginosa to various conditions includes tRNA-dependent formation of alanyl-phosphatidylglycerol. Mol Microbiol 71:551–565

    Article  CAS  PubMed  Google Scholar 

  8. Komagata K, Suzuki K (1987) Lipid and cell wall analysis in bacterial systematics. Method Microbiol 19:161–208

    Article  CAS  Google Scholar 

  9. Kumar NR, Nair S, Langer S, Busse HJ, Kämpfer P (2008) Altererythrobacter indicus sp. nov., isolated from wild rice (Porteresia coarctata Tateoka). Int J Syst Evol Microbiol 58:839–844

    Article  PubMed  Google Scholar 

  10. Kwon KK, Woo JH, Yang SH, Kang JH, Kang SG, Kim SJ, Sato T, Kato C et al (2007) Altererythrobacter epoxidivorans gen. nov., sp. nov., an epoxide hydrolase-active, mesophilic marine bacterium isolated from cold-seep sediment, and reclassification of Erythrobacter luteolus Yoon, 2005 as Altererythrobacter luteolus comb. nov. Int J Syst Evol Microbiol 57:2207–2211

    Article  CAS  PubMed  Google Scholar 

  11. Lagesen K, Hallin P, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW (2007) RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res 35:3100–3108

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Lai Q, Yuan J, Shao Z (2009) Altererythrobacter marinus sp. nov., isolated from deep seawater. Int J Syst Evol Microbiol 59:2973–2976

    Article  CAS  PubMed  Google Scholar 

  13. Lai Q, Yuan J, Gu L, Shao Z (2009) Marispirillum indicum gen.nov., sp. nov., isolated from a deep-sea environment. Int J Syst Evol Microbiol 59:1278–1281

    Article  CAS  PubMed  Google Scholar 

  14. Lei X, Li Y, Chen Z, Zheng W, Lai Q, Zhang H, Guan C, Cai G, Yang X et al (2014) Altererythrobacter xiamenensis sp. nov., an algicidal bacterium isolated from red tide seawater. Int J Syst Evol Microbiol 64:631–637

    Article  CAS  PubMed  Google Scholar 

  15. Li G, Cao Z, Lan D, Xu J, Wang S, Yin W (2007) Spatial variations in grain size distribution and selected metal contents in the Xiamen Bay, China. Environ Geol 52:1559–1567

    Article  CAS  Google Scholar 

  16. Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q et al (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1:18

    Article  PubMed  PubMed Central  Google Scholar 

  17. Ma C, Qin D, Sun Q, Zhang F, Liu H, Yu CP (2016) Removal of environmental estrogens by bacterial cell immobilization technique. Chemosphere 144:607–614

    Article  CAS  PubMed  Google Scholar 

  18. Madsen SS, Skovbolling S, Nielsen C, Korsgaard B (2004) 17-Beta estradiol and 4-nonylphenol delay smolt development and downstream migration in Atlantic salmon, Salmo salar. Aquat Toxicol 68:109–120

    Article  CAS  PubMed  Google Scholar 

  19. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  20. Seo SH, Lee SD (2010) Altererythrobacter marensis sp. nov., isolated from seawater. Int J Syst Evol Microbiol 60:307–311

    Article  CAS  PubMed  Google Scholar 

  21. Shieh WY, Chen YW, Chaw SM, Chiu HH (2003) Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water. Int J Syst Evol Microbiol 53:479–484

    Article  PubMed  Google Scholar 

  22. Tamura K, Peterson D, Petersen N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum par-simony methods. Mol Biol Evol 28:2731–2739

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Tindall BJ (1990) A Comparative study of the lipid composition of Halobacterium saccharovorum from Various Sources. Syst Appl Microbiol 13:128–130

    Article  CAS  Google Scholar 

  24. Tindall BJ (1990) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66:199–202

    Article  CAS  Google Scholar 

  25. Wang H, Li J, Hu A, Qin D, Xu H, Yu CP (2014) Melaminivora alkalimesophila gen. nov., sp. nov., a melamine-degrading betaproteobacterium isolated from a melamine-producing factory. Int J Syst Evol Microbiol 64:1938–1944

    Article  CAS  PubMed  Google Scholar 

  26. Xue X, Zhang K, Cai F, Dai J, Wang Y, Rahman E, Peng F, Fang C (2012) Altererythrobacter xinjiangensis sp. nov., isolated from desert sand, and emended description of the genus Altererythrobacter. Int J Syst Evol Microbiol 62:28–32

    Article  CAS  PubMed  Google Scholar 

  27. Ying GG, Williams B, Kookana R (2002) Environmental fate of alkylphenols and alkylphenol ethoxylates-a review. Environ Int 28:215–226

    Article  CAS  PubMed  Google Scholar 

  28. Yoon JH, Kim H, Kim IG, Kang KH, Park YH (2003) Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea. Int J Syst Evol Microbiol 53:1169–1174

    Article  CAS  PubMed  Google Scholar 

  29. Yu CP, Roh H, Chu KH (2007) 17β-Estradiol-degrading bacteria isolated from activated sludge. Environ Sci Technol 41:486–492

    Article  CAS  PubMed  Google Scholar 

  30. Zhang L, Ye X, Feng H, Jing Y, Ouyang T, Yu X, Liang R, Gao C, Chen W (2007) Heavy metal contamination in western Xiamen Bay sediments and its vicinity, China. Mar Pollut Bull 54:974–982

    Article  CAS  PubMed  Google Scholar 

  31. Zhang X, Li Q, Li G, Wang Z, Yan C (2009) Levels of estrogenic compounds in Xiamen Bay sediment, China. Mar Pollut Bull 58:1210–1216

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported by the Fujian Province Funds for Distinguished Young Scientists (2013J06012), Hundred Talents Program of Fujian Province, China, National Natural Science Foundation of China (31370503), Science and Technology Planning Project of Xiamen, China (3502Z20142021), and the Open Fund of State Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University (MMLKF13-11).

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Correspondence to Chang-Ping Yu.

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The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene sequence of strain MH-B5T is JQ723700. The draft genome sequence of strain MH-B5T has been deposited under accession number JRQQ00000000.

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Qin, D., Ma, C., Hu, A. et al. Altererythrobacter estronivorus sp. nov., an Estrogen-Degrading Strain Isolated from Yundang Lagoon of Xiamen City in China. Curr Microbiol 72, 634–640 (2016). https://doi.org/10.1007/s00284-016-0995-y

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