Skip to main content
Log in

Computational considerations in functional principal component analysis

  • Original Paper
  • Published:
Computational Statistics Aims and scope Submit manuscript

Abstract

Computing estimates in functional principal component analysis (FPCA) from discrete data is usually based on the approximation of sample curves in terms of a basis (splines, wavelets, trigonometric functions, etc.) and a geometrical structure in the data space (L 2 spaces, Sobolev spaces, etc.). Until now, the computational efforts have been focused in developing ad hoc algorithms to approximate those estimates by previously selecting an efficient approximating technique and a convenient geometrical structure. The main goal of this paper consists of establishing a procedure to formulate the algorithm for computing estimates of FPCA under general settings. The resulting algorithm is based on the classic multivariate PCA of a certain random vector and can thus be implemented in the majority of statistical packages. In fact, it is derived from the analysis of the effects of modifying the norm in the space of coordinates. Finally, an application on real data will be developed to illustrate the so derived theoretic results.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Aguilera AM, Gutiérrez R, Ocaña FA, Valderrama MJ (1995) Computational approaches to estimation in the principal component analysis of a stochastic process. Appl Stoch Models Data Anal 11:279–299

    Article  MATH  Google Scholar 

  • Aguilera AM, Gutiérrez R, Valderrama MJ (1996a) Approximation of estimators in the PCA of a stochastic process using B-splines. Commun Stat Simul Comput 25:671–690

    Article  MATH  Google Scholar 

  • Aguilera AM, Ocaña FA, Valderrama MJ (1996b) ACP de un proceso estocástico con funciones muestrales escalonadas. Qüestiiò 20:7–28

    Google Scholar 

  • Besse P (1991) Approximation spline de l’analyse en composantes principales d’une variable aléatoire hilbertienne. Ann Fac Sci Toulouse 12:329–346

    MATH  Google Scholar 

  • Cardot H (2000) Nonparametric estimation of smoothed principal components analysis of sampled noisy functions. J Nonparametr Stat 12:503–538

    Article  MATH  Google Scholar 

  • Deville JC (1973) Estimation of the eigenvalues and of the eigenvectors of a covariance operator, Technical report. Ann L’INSEE

  • James GM, Hastie TJ, Sugar CA (2000) Principal component models for sparse functional data. Biometrika 87(3):587–602

    Article  MATH  Google Scholar 

  • Ocaña FA, Aguilera AM, Valderrama MJ (1999) Functional principal component analysis by choice of norm. J Multivariate Anal 71(2):262–276

    Article  MATH  Google Scholar 

  • Ramsay JO, Dalzell JC (1991) Some tools for functional data analysis. J R Stat Soc Ser B 53:539–572

    MATH  Google Scholar 

  • Ramsay JO, Flanagan R, Wang X (1995) The functional data analysis of the pinch force of human fingers. J R Stat Soc Ser C 44:17–30

    MATH  Google Scholar 

  • Ramsay JO, Silverman BW (2002) Applied functional data analysis: methods and case studies. Springer, New York

    MATH  Google Scholar 

  • Ramsay JO, Silverman BW (2005) Functional data analysis, 2nd edn. Springer, New York

    Google Scholar 

  • Rice JA, Wu CO (2001) Nonparametric mixed effects models for unequally sampled noisy curves. Biometrics 57:253–259

    Article  Google Scholar 

  • Riesz F, Sz-Nagy B (1990) Leçons d’Analyse Fonctionnelle. Gauthier–Villars, Paris

    Google Scholar 

  • Silverman BW (1996) Smoothed functional principal components analysis by choice of norm. Ann Stat 24(1):1–24

    Article  MATH  Google Scholar 

  • Yao F, Müller HG, Wang JL (2005) Functional data analysis for sparse longitudinal data. J Am Stat Assoc 100:577–590

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Francisco A. Ocaña.

Additional information

This research has been supported by Project MTM2004-5992 from Dirección General de Investigación, Ministerio de Ciencia y Tecnología.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ocaña, F.A., Aguilera, A.M. & Escabias, M. Computational considerations in functional principal component analysis. Computational Statistics 22, 449–465 (2007). https://doi.org/10.1007/s00180-007-0051-2

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00180-007-0051-2

Keywords

Navigation