Abstract
Mitochondria are important organelles in cellular metabolism. Several crucial metabolic pathways such as the energy producing electron transport chain or the tricarboxylic acid cycle are hosted inside the mitochondria. The proper function of mitochondria depends on the import of proteins, which are encoded in the nucleus and synthesized in the cytosol. Micro-ribonucleic acids (miRNAs) are short non-coding ribonucleic acid (RNA) molecules with the ability to prevent messenger RNA (mRNA)-translation or to induce the degradation of mRNA-transcripts. Although miRNAs are mainly located in the cytosol or the nucleus, a subset of ~150 different miRNAs, called mitomiRs, has also been found localized to mitochondrial fractions of cells and tissues together with the subunits of the RNA-induced silencing complex (RISC); the protein complex through which miRNAs normally act to prevent translation of their mRNA-targets. The focus of this review is on miRNAs and mitomiRs with influence on mitochondrial metabolism and their possible pathophysiological impact.
Similar content being viewed by others
References
Bienertova-Vasku J, Sana J, Slaby O (2013) The role of microRNAs in mitochondria in cancer. Cancer Lett 336:1–7. doi:10.1016/j.canlet.2013.05.001
Hockenbery DM (2010) Targeting mitochondria for cancer therapy. Environ Mol Mutagen 51:476–489. doi:10.1002/em.20552
Hoeks J, Schrauwen P (2012) Muscle mitochondria and insulin resistance: a human perspective. Trends Endocrinol Metab 23:444–450. doi:10.1016/j.tem.2012.05.007
James AM, Collins Y, Logan A, Murphy MP (2012) Mitochondrial oxidative stress and the metabolic syndrome. Trends Endocrinol Metab 23:429–434. doi:10.1016/j.tem.2012.06.008
Schiavi A, Ventura N (2014) The interplay between mitochondria and autophagy and its role in the aging process. Exp Gerontol 56:147–153. doi:10.1016/j.exger.2014.02.015
Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell 75:843–854. doi:10.1016/0092-8674(93)90529-Y
Bandiera S, Matégot R, Girard M et al (2013) MitomiRs delineating the intracellular localization of microRNAs at mitochondria. Free Radic Biol Med 64:12–19. doi:10.1016/j.freeradbiomed.2013.06.013
Barrey E, Saint-Auret G, Bonnamy B et al (2011) Pre-microRNA and mature microRNA in human mitochondria. PLoS One 6:e20220. doi:10.1371/journal.pone.0020220
Bian Z, Li L-M, Tang R et al (2010) Identification of mouse liver mitochondria-associated miRNAs and their potential biological functions. Cell Res 20:1076–1078. doi:10.1038/cr.2010.119
Jagannathan R, Thapa D, Nichols CE et al (2015) Translational regulation of the mitochondrial genome following redistribution of mitochondrial MicroRNA (MitomiR) in the diabetic heart. Circ Cardiovasc Genet. doi:10.1161/CIRCGENETICS.115.001067
Sripada L, Tomar D, Prajapati P et al (2012) Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA. PLoS One 7:e44873. doi:10.1371/journal.pone.0044873
Kren BT, Wong PY, Sarver A et al (2009) microRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis. RNA Biol 6(1):65–72. doi:10.4161/rna.6.1.7534
Mestdagh P, Hartmann N, Baeriswyl L et al (2014) Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study. Nat Methods 11:809–815. doi:10.1038/nmeth.3014
Imig J, Brunschweiger A, Brümmer A et al (2015) miR-CLIP capture of a miRNA targetome uncovers a lincRNA H19–miR-106a interaction. Nat Chem Biol. doi:10.1038/nchembio.1713
Hafner M, Landthaler M, Burger L et al (2010) Transcriptome-wide identification of RNA-binding protein and MicroRNA target sites by PAR-CLIP. Cell 141:129–141. doi:10.1016/j.cell.2010.03.009
Bandiera S, Rüberg S, Girard M et al (2011) Nuclear outsourcing of RNA interference components to human mitochondria. PLoS One 6:e20746. doi:10.1371/journal.pone.0020746
Svoboda P (2015) A toolbox for miRNA analysis. FEBS Lett 589:1694–1701. doi:10.1016/j.febslet.2015.04.054
Zhang Y, Wang Z, Gemeinhart RA (2013) Progress in microRNA delivery. J Control Release 172:962–974. doi:10.1016/j.jconrel.2013.09.015
Qiu H, Zhong J, Luo L et al (2015) A PCR-based method to construct lentiviral vector expressing double tough Decoy for miRNA inhibition. PLoS One 10:e0143864. doi:10.1371/journal.pone.0143864
Park CY, Jeker LT, Carver-Moore K et al (2012) A resource for the conditional ablation of microRNAs in the mouse. Cell Rep 1:385–391. doi:10.1016/j.celrep.2012.02.008.A
Nicholls DG, Ferguson SJ (2013) Bioenergetics 4. Bioenergetics. doi:10.1016/B978-0-12-388425-1.00012-9
Pearce S, Nezich CL, Spinazzola A (2013) Mitochondrial diseases: translation matters. Mol Cell Neurosci 55:1–12. doi:10.1016/j.mcn.2012.08.013
Friedman JR, Nunnari J (2014) Mitochondrial form and function. Nature 505:335–343. doi:10.1038/nature12985
Lee C, Zeng J, Drew BG et al (2015) The mitochondrial-derived peptide MOTS-c promotes metabolic homeostasis and reduces obesity and insulin resistance. Cell Metab 21:443–454. doi:10.1016/j.cmet.2015.02.009
Maximov V, Martynenko A, Hunsmann G, Tarantul V (2002) Mitochondrial 16S rRNA gene encodes a functional peptide, a potential drug for Alzheimer’s disease and target for cancer therapy. Med Hypotheses 59:670–673. doi:10.1016/S0306-9877(02)00223-2
Twig G, Graf SA, Wikstrom JD et al (2006) Tagging and tracking individual networks within a complex mitochondrial web with photoactivatable GFP. Am J Physiol Cell Physiol 291:C176–C184. doi:10.1152/ajpcell.00348.2005
Ha M, Kim VN (2014) Regulation of microRNA biogenesis. Nat Rev Mol Cell Biol 15:509–524. doi:10.1038/nrm3838
Libri V, Miesen P, Van Rij RP, Buck AH (2013) Regulation of microRNA biogenesis and turnover by animals and their viruses. Cell Mol Life Sci 70:3525–3544. doi:10.1007/s00018-012-1257-1
Cuellar TL, McManus MT (2005) MicroRNAs and endocrine biology. J Endocrinol 187:327–332. doi:10.1677/joe.1.06426
Vidaurre S, Fitzpatrick C, Burzio VA et al (2014) Down-regulation of the antisense mitochondrial non-coding RNAs (ncRNAs) is a unique vulnerability of cancer cells and a potential target for cancer therapy. J Biol Chem 289:27182–27198. doi:10.1074/jbc.M114.558841
Parrish S, Fleenor J, Xu S et al (2000) Functional anatomy of a dsRNA trigger: differential requirement for the two trigger strands in RNA interference. Mol Cell 6:1077–1087. doi:10.1016/S1097-2765(00)00106-4
Carrer M, Liu N, Grueter CE et al (2012) Control of mitochondrial metabolism and systemic energy homeostasis by microRNAs 378 and 378*. Proc Natl Acad Sci U S A 109:15330–15335. doi:10.1073/pnas.1207605109
Wei Y, Li L, Wang D et al (2014) Importin 8 regulates the transport of mature microRNAs into the cell nucleus. J Biol Chem. doi:10.1074/jbc.C113.541417
Gajos-Michniewicz A, Duechler M, Czyz M (2014) MiRNA in melanoma-derived exosomes. Cancer Lett 347:29–37. doi:10.1016/j.canlet.2014.02.004
Bushati N, Cohen SM (2007) microRNA functions. Annu Rev Cell Dev Biol 23:175–205. doi:10.1146/annurev.cellbio.23.090506.123406
Mraz M, Malinova K, Mayer J, Pospisilova S (2009) MicroRNA isolation and stability in stored RNA samples. Biochem Biophys Res Commun 390:1–4. doi:10.1016/j.bbrc.2009.09.061
Shinde S, Bhadra U (2015) A complex genome-MicroRNA interplay in human mitochondria. Biomed Res Int 2015:1–13. doi:10.1155/2015/206382
King IN, Yartseva V, Salas D et al (2014) The RNA-binding protein TDP-43 selectively disrupts MicroRNA-1/206 incorporation into the RNA-induced silencing complex. J Biol Chem 289:14263–14271. doi:10.1074/jbc.M114.561902
Loughlin FE, Gebert LFR, Towbin H et al (2011) Structural basis of pre-let-7 miRNA recognition by the zinc knuckles of pluripotency factor Lin28. Nat Struct Mol Biol 19:84–89. doi:10.1038/nsmb.2202
Towbin H, Wenter P, Guennewig B et al (2013) Systematic screens of proteins binding to synthetic microRNA precursors. Nucleic Acids Res. doi:10.1093/nar/gks1197
La Rocca G, Olejniczak SH, González AJ et al (2015) In vivo, Argonaute-bound microRNAs exist predominantly in a reservoir of low molecular weight complexes not associated with mRNA. Proc Natl Acad Sci U S A 112:767–772. doi:10.1073/pnas.1424217112
Belter A, Gudanis D, Rolle K et al (2014) Mature MiRNAs Form Secondary Structure, which Suggests Their Function beyond RISC. PLoS ONE 9:e113848. doi:10.1371/journal.pone.0113848
Wagner GR, Payne RM (2013) Widespread and enzyme-independent N{epsilon}-acetylation and N{epsilon}-succinylation in the chemical conditions of the mitochondrial matrix. J Biol Chem 288:29036–29045. doi:10.1074/jbc.M113.486753
Taoka M, Ishikawa D, Nobe Y et al (2014) RNA cytidine acetyltransferase of small-subunit ribosomal RNA: identification of acetylation sites and the responsible acetyltransferase in fission yeast, Schizosaccharomyces pombe. PLoS One 9:e112156. doi:10.1371/journal.pone.0112156
Alfonso L, Ai G, Spitale RC, Bhat GJ (2014) Molecular targets of aspirin and cancer prevention. Br J Cancer 111:61–67. doi:10.1038/bjc.2014.271
Pan T (2013) N6-methyl-Adenosine modification in messenger and long non- coding RNA. Trends Biochem Sci 38:204–209. doi:10.1016/j.tibs.2012.12.006.N
Li K, Zhang J, Yu J et al (2015) MicroRNA-214 suppresses gluconeogenesis by targeting activating transcriptional factor 4. J Biol Chem. doi:10.1074/jbc.M114.633990
Squires JE, Patel HR, Nousch M et al (2012) Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA. Nucleic Acids Res 40:5023–5033. doi:10.1093/nar/gks144
Alarco CR (2015) N 6 -methyladenosine marks primary microRNAs for processing. Nature. doi:10.1038/nature14281
Entelis NS, Kolesnikova OA, Kazakova H et al (2002) Import of nuclear encoded RNAs into yeast and human mitochondria: experimental approaches and possible biomedical applications. Genet Eng (N Y) 24:191–213. doi:10.1007/978-1-4615-0721-5_9
Alerting E (2005) Human mitochondrial tRNA Met is exported to the cytoplasm and associates with the Argonaute 2 protein. RNA 11:849–852. doi:10.1261/rna.2210805.To
Wang G, Chen H, Oktay Y et al (2010) PNPASE regulates RNA import into mitochondria. Cell 142:456–467. doi:10.1016/j.cell.2010.06.035.PNPASE
Michaud M, Maréchal-Drouard L, Duchêne AM (2014) Targeting of cytosolic mRNA to mitochondria: naked RNA can bind to the mitochondrial surface. Biochimie 100:159–166. doi:10.1016/j.biochi.2013.11.007
Salinas T, Duchêne A-M, Delage L et al (2006) The voltage-dependent anion channel, a major component of the tRNA import machinery in plant mitochondria. Proc Natl Acad Sci U S A 103:18362–18367. doi:10.1073/pnas.0606449103
Tarassov I, Kamenski P, Kolesnikova O et al (2007) Import of nuclear DNA-encoded RNAs into mitochondria and mitochondrial translation. Cell Cycle 6:2473–2477. doi:10.4161/cc.6.20.4783
Ro S, Ma H-Y, Park C et al (2013) The mitochondrial genome encodes abundant small noncoding RNAs. Cell Res 23:759–774. doi:10.1038/cr.2013.37
Mercer TR, Neph S, Dinger ME et al (2011) The human mitochondrial transcriptome. Cell 146:645–658. doi:10.1016/j.cell.2011.06.051.The
Wang W, Visavadiya NP, Pandya JD et al (2014) Mitochondria-associated microRNAs in rat hippocampus following traumatic brain injury. Exp Neurol. doi:10.1016/j.expneurol.2014.12.018
Aschrafi A, Schwechter AD, Mameza MG et al (2008) MicroRNA-338 regulates local cytochrome c oxidase IV mRNA levels and oxidative phosphorylation in the axons of sympathetic neurons. J Neurosci 28:12581–12590. doi:10.1523/JNEUROSCI.3338-08.2008
Aschrafi A, Kar AN, Natera-Naranjo O et al (2012) MicroRNA-338 regulates the axonal expression of multiple nuclear-encoded mitochondrial mRNAs encoding subunits of the oxidative phosphorylation machinery. Cell Mol Life Sci 69:4017–4027. doi:10.1007/s00018-012-1064-8
Jacovetti C, Abderrahmani A, Parnaud G et al (2012) MicroRNAs contribute to compensatory β cell expansion during pregnancy and obesity. J Clin Invest 122:3541–3551. doi:10.1172/JCI64151
Zheng S, Li Y, Zhang Y et al (2011) MiR-101 regulates HSV-1 replication by targeting ATP5B. Antiviral Res 89:219–226. doi:10.1016/j.antiviral.2011.01.008
Willers IM, Martínez-Reyes I, Martínez-Diez M, Cuezva JM (2012) miR-127-5p targets the 3′UTR of human β-F1-ATPase mRNA and inhibits its translation. Biochim Biophys Acta 1817:838–848. doi:10.1016/j.bbabio.2012.03.005
Das S, Ferlito M, Kent OA et al (2012) Nuclear miRNA regulates the mitochondrial genome in the heart. Circ Res 110:1596–1603. doi:10.1161/CIRCRESAHA.112.267732
Pandey A, Pain J, Ghosh AK et al (2015) Fe-S cluster biogenesis in isolated mammalian mitochondria: coordinated use of persulfide sulfur and iron and requirements for GTP, NADH, and ATP. J Biol Chem 290:640–657. doi:10.1074/jbc.M114.610402
Tong WH, Rouault T (2000) Distinct iron-sulfur cluster assembly complexes exist in the cytosol and mitochondria of human cells. EMBO J 19:5692–5700. doi:10.1093/emboj/19.21.5692
Gee HE, Ivan C, Calin GA, Ivan M (2013) HypoxamiRs and cancer: from biology to targeted therapy. Antioxid Redox Signal. doi:10.1089/ars.2013.5639
Merlo A, de Quiros SB, Secades P et al (2012) Identification of a signaling axis HIF-1α/microRNA-210/ISCU independent of SDH mutation that defines a subgroup of head and neck paragangliomas. J Clin Endocrinol Metab 97:E2194–E2200. doi:10.1210/jc.2012-2410
Yoshioka Y, Kosaka N, Ochiya T, Kato T (2012) Micromanaging iron homeostasis: hypoxia-inducible micro-RNA-210 suppresses iron homeostasis-related proteins. J Biol Chem 287:34110–34119. doi:10.1074/jbc.M112.356717
Qiao A, Khechaduri A, Kannan Mutharasan R et al (2013) MicroRNA-210 decreases heme levels by targeting ferrochelatase in cardiomyocytes. J Am Heart Assoc 2:e000121. doi:10.1161/JAHA.113.000121
Cottrill KA, Chan SY, Loscalzo J (2014) Hypoxamirs and mitochondrial metabolism. Antioxid Redox Signal 21:1189–1201. doi:10.1089/ars.2013.5641
Kim JH, Park SG, Song S-Y et al (2013) Reactive oxygen species-responsive miR-210 regulates proliferation and migration of adipose-derived stem cells via PTPN2. Cell Death Dis 4:e588. doi:10.1038/cddis.2013.117
Semenza GL (2011) Hypoxia-inducible factor 1: regulator of mitochondrial metabolism and mediator of ischemic preconditioning. Biochim Biophys Acta 1813:1263–1268. doi:10.1016/j.bbamcr.2010.08.006
Zacharewicz E, Lamon S, Russell AP (2013) MicroRNAs in skeletal muscle and their regulation with exercise, ageing, and disease. Front Physiol 4:266. doi:10.3389/fphys.2013.00266
Cottrill KA, Chan SY, Loscalzo J (2014) Hypoxamirs and mitochondrial metabolism. Antioxid Redox Signal 21:1189–1201. doi:10.1089/ars.2013.5641
McCormick R, Buffa FM, Ragoussis J, Harris AL (2010) The role of hypoxia regulated microRNAs in cancer. Curr Top Microbiol Immunol 345:47–69
Ivan M, Huang X (2014) miR-210: fine-tuning the hypoxic response. Adv Exp Med Biol 772:205–227. doi:10.1007/978-1-4614-5915-6_10
Chan SY, Loscalzo J (2010) MicroRNA-210: a unique and pleiotropic hypoxamir. Cell Cycle 9:1072–1083. doi:10.4161/cc.9.6.11006
Hale A, Lee C, Annis S et al (2014) An Argonaute 2 switch regulates circulating miR-210 to coordinate hypoxic adaptation across cells. Biochim Biophys Acta. doi:10.1016/j.bbamcr.2014.06.012
Chen B, Liu Y, Jin X et al (2014) MicroRNA-26a regulates glucose metabolism by direct targeting PDHX in colorectal cancer cells. BMC Cancer 14:443. doi:10.1186/1471-2407-14-443
Tibiche C, Wang E (2008) MicroRNA regulatory patterns on the human metabolic network. Open Syst Biol J 1:1–8. doi:10.2174/1876392800801010001
Chan SY, Zhang Y-Y, Hemann C et al (2009) MicroRNA-210 controls mitochondrial metabolism during hypoxia by repressing the iron-sulfur cluster assembly proteins ISCU1/2. Cell Metab 10:273–284. doi:10.1016/j.cmet.2009.08.015
Wang X, Wang X (2006) Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucleic Acids Res 34:1646–1652. doi:10.1093/nar/gkl068
Puisségur M-P, Mazure NM, Bertero T et al (2011) miR-210 is overexpressed in late stages of lung cancer and mediates mitochondrial alterations associated with modulation of HIF-1 activity. Cell Death Differ 18:465–478. doi:10.1038/cdd.2010.119
Gao P, Tchernyshyov I, Chang T-C et al (2009) c-Myc suppression of miR-23a/b enhances mitochondrial glutaminase expression and glutamine metabolism. Nature 458:762–765. doi:10.1038/nature07823
Rathore MG, Saumet A, Rossi J-F et al (2012) The NF-κB member p65 controls glutamine metabolism through miR-23a. Int J Biochem Cell Biol 44:1448–1456. doi:10.1016/j.biocel.2012.05.011
Leivonen S-K, Rokka A, Ostling P et al (2011) Identification of miR-193b targets in breast cancer cells and systems biological analysis of their functional impact. Mol Cell Proteomics 10:M110.005322. doi:10.1074/mcp.M110.005322
Mersey BD, Jin P, Danner DJ (2005) Human microRNA (miR29b) expression controls the amount of branched chain α-ketoacid dehydrogenase complex in a cell. Hum Mol Genet 14:3371–3377. doi:10.1093/hmg/ddi368
Benatti RO, Melo AM, Borges FO et al (2014) Maternal high-fat diet consumption modulates hepatic lipid metabolism and microRNA-122 (miR-122) and microRNA-370 (miR-370) expression in offspring. Br J Nutr 122:1–11. doi:10.1017/S0007114514000579
Wende AR, Symons JD, Abel ED (2012) Mechanisms of lipotoxicity in the cardiovascular system. Curr Hypertens Rep 14:517–531. doi:10.1007/s11906-012-0307-2
Daimiel-Ruiz L, Klett M, Konstantinisou V et al (2014) Dietary lipids modulate the expression of miR-107, a miRNA that regulates the circadian system. Mol Nutr Food Res. doi:10.1002/mnfr.201400616
Sripada L, Tomar D, Singh R (2012) Mitochondria: one of the destinations of miRNAs. Mitochondrion 12:593–599. doi:10.1016/j.mito.2012.10.009
Trajkovski M, Hausser J, Soutschek J et al (2011) MicroRNAs 103 and 107 regulate insulin sensitivity. Nature 474:649–653. doi:10.1038/nature10112
Huang T-C, Sahasrabuddhe NA, Kim M-S et al (2012) Regulation of lipid metabolism by Dicer revealed through SILAC mice. J Proteome Res 11:2193–2205. doi:10.1021/pr2009884
Rottiers V, Najafi-Shoushtari SH, Kristo F et al (2011) MicroRNAs in metabolism and metabolic diseases. Cold Spring Harb Symp Quant Biol 76:225–233. doi:10.1101/sqb.2011.76.011049
Iliopoulos D, Drosatos K, Hiyama Y et al (2010) MicroRNA-370 controls the expression of microRNA-122 and Cpt1alpha and affects lipid metabolism. J Lipid Res 51:1513–1523. doi:10.1194/jlr.M004812
Gerin I, Clerbaux L-A, Haumont O et al (2010) Expression of miR-33 from an SREBP2 intron inhibits cholesterol export and fatty acid oxidation. J Biol Chem 285:33652–33661. doi:10.1074/jbc.M110.152090
Bommer GT, MacDougald OA (2011) Regulation of lipid homeostasis by the bifunctional SREBF2-miR33a locus. Cell Metab 13:241–247. doi:10.1016/j.cmet.2011.02.004
Moore KJ, Rayner KJ, Suárez Y, Fernández-Hernando C (2011) The role of microRNAs in cholesterol efflux and hepatic lipid metabolism. Annu Rev Nutr 31:49–63. doi:10.1146/annurev-nutr-081810-160756
Fernández-Hernando C, Moore KJ (2011) MicroRNA modulation of cholesterol homeostasis. Arterioscler Thromb Vasc Biol 31:2378–2382. doi:10.1161/ATVBAHA.111.226688
Xu X, So J-S, Park J-G, Lee A-H (2013) Transcriptional control of hepatic lipid metabolism by SREBP and ChREBP. Semin Liver Dis 33:301–311. doi:10.1055/s-0033-1358523.Transcriptional
Fernández-hernando C, Suárez Y, Rayner KJ, Moore KJ (2011) MicroRNAs in lipid metabolism. Curr Opin Lipidol 22:86–92. doi:10.1097/MOL.0b013e3283428d9d.MicroRNAs
Goedeke L, Vales-Lara FM, Fenstermaker M et al (2013) A regulatory role for microRNA 33* in controlling lipid metabolism gene expression. Mol Cell Biol 33:2339–2352. doi:10.1128/MCB.01714-12
Esau C, Davis S, Murray SF et al (2006) miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting. Cell Metab 3:87–98. doi:10.1016/j.cmet.2006.01.005
Lynn FC (2009) Meta-regulation: microRNA regulation of glucose and lipid metabolism. Trends Endocrinol Metab 20:452–459. doi:10.1016/j.tem.2009.05.007
Singh PK, Brand RE, Mehla K (2012) MicroRNAs in pancreatic cancer metabolism. Nat Rev Gastroenterol Hepatol 9:334–344. doi:10.1038/nrgastro.2012.63
Shea CM, Tzertzinis G (2010) Controlled expression of functional miR-122 with a ligand inducible expression system. BMC Biotechnol 10:76. doi:10.1186/1472-6750-10-76
Kurtz CL, Peck BCE, Finnin EE et al (2014) microRNA-29 fine-tunes the expression of key FOXA2-activated lipid metabolism genes and is dysregulated in animal models of insulin resistance and diabetes. Diabetes. doi:10.2337/db13-1015
el Azzouzi H, Leptidis S, Dirkx E et al (2013) The hypoxia-inducible microRNA cluster miR-199a ~214 targets myocardial PPARδ and impairs mitochondrial fatty acid oxidation. Cell Metab 18:341–354. doi:10.1016/j.cmet.2013.08.009
Li B, Zhang Z, Zhang H et al (2014) Abberant miR-199a-5p/caveolin1/PPAR a axis in hepatic steatosis. J Mol Endocrinol 53:393–403. doi:10.1530/JME-14-0127
Foley NH, O’Neill LA (2012) miR-107: a Toll-like receptor-regulated miRNA dysregulated in obesity and type II diabetes. J Leukoc Biol 92:521–527. doi:10.1189/jlb.0312160
Wilfred BR, Wang W-X, Nelson PT (2007) Energizing miRNA research: a review of the role of miRNAs in lipid metabolism, with a prediction that miR-103/107 regulates human metabolic pathways. Mol Genet Metab 91:209–217. doi:10.1016/j.ymgme.2007.03.011
Peng Y, Xiang H, Chen C et al (2013) MiR-224 impairs adipocyte early differentiation and regulates fatty acid metabolism. Int J Biochem Cell Biol 45:1585–1593. doi:10.1016/j.biocel.2013.04.029
Thorrez L, Laudadio I, Van Deun K et al (2011) Tissue-specific disallowance of housekeeping genes: the other face of cell differentiation. Genome Res 21:95–105. doi:10.1101/gr.109173.110
Dávalos A, Goedeke L, Smibert P et al (2011) miR-33a/b contribute to the regulation of fatty acid metabolism and insulin signaling. Proc Natl Acad Sci U S A 108:9232–9237. doi:10.1073/pnas.1102281108
Desler C, Lykke A, Rasmussen LJ (2010) The effect of mitochondrial dysfunction on cytosolic nucleotide metabolism. J Nucleic Acids. doi:10.4061/2010/701518
Wu C, Gong Y, Sun A et al (2013) The human MTHFR rs4846049 polymorphism increases coronary heart disease risk through modifying miRNA binding. Nutr Metab Cardiovasc Dis 23:693–698. doi:10.1016/j.numecd.2012.02.009
Stone N, Pangilinan F, Molloy AM et al (2011) Bioinformatic and genetic association analysis of microRNA target sites in one-carbon metabolism genes. PLoS One 6:e21851. doi:10.1371/journal.pone.0021851
Rawls J, Knecht W, Diekert K et al (2000) Requirements for the mitochondrial import and localization of dihydroorotate dehydrogenase. Eur J Biochem 267:2079–2087. doi:10.1046/j.1432-1327.2000.01213.x
Zhai H, Song B, Xu X et al (2013) Inhibition of autophagy and tumor growth in colon cancer by miR-502. Oncogene 32:1570–1579. doi:10.1038/onc.2012.167
Soni MS, Rabaglia ME, Bhatnagar S et al (2014) Downregulation of Carnitine acyl-carnitine translocase by miRNAs 132 and 212 amplifies glucose-stimulated insulin secretion. Diabetes 1372:1–17. doi:10.2337/db13-1677
Liu Z, Jeppesen PB, Gregersen S et al (2008) Dose- and glucose-dependent effects of amino acids on insulin secretion from isolated mouse islets and clonal INS-1E beta-cells. Rev Diabet Stud 5:232–244. doi:10.1900/RDS.2008.5.232
Morita S, Horii T, Kimura M, Hatada I (2013) MiR-184 regulates insulin secretion through repression of Slc25a22. PeerJ 1:e162. doi:10.7717/peerj.162
Vienberg S, Geiger J, Madsen S, Dalgaard LT (2016) MicroRNAs in metabolism. Acta Physiol (Oxf). doi:10.1111/apha.12681
Youle RJ, van der Bliek AM (2012) Mitochondrial fission, fusion and stress. Science 337:1062–1065. doi:10.1007/s13398-014-0173-7.2
Chan DC (2012) Fusion and fission: interlinked processes critical for mitochondrial health. Annu Rev Genet 46:265–287. doi:10.1146/annurev-genet-110410-132529
Li J, Donath S, Li Y et al (2010) miR-30 regulates mitochondrial fission through targeting p53 and the dynamin-related protein-1 pathway. PLoS Genet 6:e1000795. doi:10.1371/journal.pgen.1000795
Wang J-X, Jiao J-Q, Li Q et al (2011) miR-499 regulates mitochondrial dynamics by targeting calcineurin and dynamin-related protein-1. Nat Med 17:71–78. doi:10.1038/nm.2282
Long B, Wang K, Li N et al (2013) miR-761 regulates the mitochondrial network by targeting mitochondrial fission factor. Free Radic Biol Med 65:371–379. doi:10.1016/j.freeradbiomed.2013.07.009
Tak H, Kim J, Jayabalan AK et al (2014) miR-27 regulates mitochondrial networks by directly targeting the mitochondrial fission factor. Exp Mol Med 46:e123. doi:10.1038/emm.2014.73
Wang K, Long B, Jiao J-Q et al (2012) miR-484 regulates mitochondrial network through targeting Fis1. Nat Commun 3:781. doi:10.1038/ncomms1770
Sun L, Wang N, Ban T et al (2014) MicroRNA-23a mediates mitochondrial compromise in estrogen deficiency-induced concentric remodeling via targeting PGC-1α. J Mol Cell Cardiol 75:1–11. doi:10.1016/j.yjmcc.2014.06.012
Aoi W, Naito Y, Mizushima K et al (2010) The microRNA miR-696 regulates PGC-1α in mouse skeletal muscle in response to physical activity. Am J Physiol Endocrinol Metab 298:799–806. doi:10.1152/ajpendo.00448.2009
Zhang X, Zuo X, Yang B et al (2014) microrna directly enhances mitochondrial translation during muscle differentiation. Cell 158:607–619. doi:10.1016/j.cell.2014.05.047
Yamamoto H, Morino K, Nishio Y et al (2012) MicroRNA-494 regulates mitochondrial biogenesis in skeletal muscle through mitochondrial transcription factor A and Forkhead box j3. Am J Physiol Endocrinol Metab 303:E1419–E1427. doi:10.1152/ajpendo.00097.2012
Li J, Li Y, Jiao J et al (2014) Mitofusin 1 is negatively regulated by microRNA 140 in cardiomyocyte apoptosis. Mol Cell Biol 34:1788–1799. doi:10.1128/MCB.00774-13
Zhang Y, Yang L, Gao Y-F et al (2013) MicroRNA-106b induces mitochondrial dysfunction and insulin resistance in C2C12 myotubes by targeting mitofusin-2. Mol Cell Endocrinol 381:230–240. doi:10.1016/j.mce.2013.08.004
Yan X, Liang H, Deng T et al (2013) The identification of novel targets of miR-16 and characterization of their biological functions in cancer cells. Mol Cancer 12:92. doi:10.1186/1476-4598-12-92
Chen B, Li H, Zeng X et al (2012) Roles of microRNA on cancer cell metabolism. J Transl Med 10:228. doi:10.1186/1479-5876-10-228
Tomasetti M, Santarelli L, Neuzil J, Dong L (2014) MicroRNA regulation of cancer metabolism: role in tumour suppression. Mitochondrion 19:29–38. doi:10.1016/j.mito.2014.06.004
Weinberg SE, Chandel NS (2015) Targeting mitochondria metabolism for cancer therapy. Nat Chem Biol 11:9–15. doi:10.1038/nchembio.1712
Tomasetti M, Neuzil J, Dong L (2013) MicroRNAs as regulators of mitochondrial function: role in cancer suppression. Biochim Biophys Acta 1840:1441–1453. doi:10.1016/j.bbagen.2013.09.002
Tattikota SG, Sury MD, Rathjen T et al (2013) Argonaute2 regulates the pancreatic β-cell secretome. Mol Cell Proteomics 12:1214–1225. doi:10.1074/mcp.M112.024786
Baseler WA, Thapa D, Jagannathan R et al (2012) miR-141 as a regulator of the mitochondrial phosphate carrier (Slc25a3) in the type 1 diabetic heart. Am J Physiol Cell Physiol 303:C1244–C1251. doi:10.1152/ajpcell.00137.2012
Kim S, Rhee J, Yoo HJ et al (2015) Bioinformatic and metabolomic analysis reveals miR-155 regulates thiamine level in breast cancer. Cancer Lett 357:488–497. doi:10.1016/j.canlet.2014.11.058
Nishi H, Ono K, Iwanaga Y et al (2010) MicroRNA-15b modulates cellular ATP levels and degenerates mitochondria via Arl2 in neonatal rat cardiac myocytes. J Biol Chem 285:4920–4930. doi:10.1074/jbc.M109.082610
Sun LL, Jiang BG, Li WT et al (2011) MicroRNA-15a positively regulates insulin synthesis by inhibiting uncoupling protein-2 expression. Diabetes Res Clin Pract 91:94–100. doi:10.1016/j.diabres.2010.11.006
Chen C, Wang K, Chen J et al (2009) In vitro evidence suggests that miR-133a-mediated regulation of uncoupling protein 2 (UCP2) is an indispensable step in myogenic differentiation. J Biol Chem 284:5362–5369. doi:10.1074/jbc.M807523200
Marchi S, Lupini L, Patergnani S et al (2013) Downregulation of the mitochondrial calcium uniporter by cancer-related miR-25. Curr Biol 23:58–63. doi:10.1016/j.cub.2012.11.026
Acknowledgments
J. Geiger and L.T. Dalgaard are supported by a grant from the Danish Independent Research Council | Health Sciences (DFF-FSS) and Roskilde University. The funders had no role in decision to publish or preparation of the manuscript.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest
The authors declare that they have no conflicts of interest.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Geiger, J., Dalgaard, L.T. Interplay of mitochondrial metabolism and microRNAs. Cell. Mol. Life Sci. 74, 631–646 (2017). https://doi.org/10.1007/s00018-016-2342-7
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00018-016-2342-7