Carbon Inputs from Miscanthus Displace Older Soil Organic Carbon Without Inducing Priming
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- Robertson, A.D., Davies, C.A., Smith, P. et al. Bioenerg. Res. (2017) 10: 86. doi:10.1007/s12155-016-9772-9
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The carbon (C) dynamics of a bioenergy system are key to correctly defining its viability as a sustainable alternative to conventional fossil fuel energy sources. Recent studies have quantified the greenhouse gas mitigation potential of these bioenergy crops, often concluding that C sequestration in soils plays a primary role in offsetting emissions through energy generation. Miscanthus is a particularly promising bioenergy crop and research has shown that soil C stocks can increase by more than 2 t C ha−1 yr−1. In this study, we use a stable isotope (13C) technique to trace the inputs and outputs from soils below a commercial Miscanthus plantation in Lincolnshire, UK, over the first 7 years of growth after conversion from a conventional arable crop. Results suggest that an unchanging total topsoil (0–30 cm) C stock is caused by Miscanthus additions displacing older soil organic matter. Further, using a comparison between bare soil plots (no new Miscanthus inputs) and undisturbed Miscanthus controls, soil respiration was seen to be unaffected through priming by fresh inputs or rhizosphere. The temperature sensitivity of old soil C was also seen to be very similar with and without the presence of live root biomass. Total soil respiration from control plots was dominated by Miscanthus-derived emissions with autotrophic respiration alone accounting for ∼50 % of CO2. Although total soil C stocks did not change significantly over time, the Miscanthus-derived soil C accumulated at a rate of 860 kg C ha−1 yr−1 over the top 30 cm. Ultimately, the results from this study indicate that soil C stocks below Miscanthus plantations do not necessarily increase during the first 7 years.
KeywordsSoil C Priming Bioenergy 13CO2 Greenhouse gas Autotrophic soil respiration
The most trusted predictions for the impacts of anthropogenic climate change suggest an increase in global average temperatures that will have a wide range of detrimental effects on human and natural systems [1, 2]. This climate change is primarily driven by increasing concentrations of greenhouse gases (GHGs) in the atmosphere, and in particular carbon dioxide (CO2) emissions resulting from burning fossil fuels for energy generation . Bioenergy crops like Miscanthus have the potential to displace some of our dependency on non-renewable fossil fuels [4, 5] but the relative advantage of bioenergy is largely influenced by realised yields and carbon (C) sequestration in pools that remain after the aboveground biomass has been harvested [6, 7]. Even a relatively modest 1 t C ha−1 yr−1  increase in soil C stocks can improve the GHG footprint of Miscanthus by 314 g CO2-eq kWh−1, assuming electricity generation in a steam-turbine power station averaging 30 % efficiency  and an average harvested yield of 10 t ha−1 yr−1 [10, 11] (Eq. 3 ). While there are a number of models capable of accurately simulating yields for a wide range of conditions (e.g. Clifton-Brown et al. ), predicted changes in soil C stocks are less certain, and for the less studied crops like Miscanthus, uncertainty is particularly high [13, 14].
Previous research has suggested that Miscanthus can sequester more than 2 t C ha−1 yr−1 in the top 30 cm of soil  but a site in Lincolnshire, UK, noted no change 7 years after the plantation was established . Consequently, it is essential to better understand the reasons that explain why some soils, and plantations, show large increases in soil C stocks  and others show no significant change [8, 16], or even decreases [13, 16]. Further, to allow accurate model simulations of temporal and spatial scales beyond those practical to measure, we must better understand the mechanisms that underpin soil C sequestration and soil organic matter (SOM) decomposition. Since these findings tend to be very site-specific, many studies are required to evaluate the potential of soil C storage below bioenergy crops.
Fluxes in and out of soil C pools are predominantly due to decomposition, a process resulting in CO2 emissions from the breakdown of organic matter. Senescence of plant matter typically provides the majority of this organic matter, and in productive systems such as Miscanthus this can be a large annual C addition [15, 17]. However, the addition of fresh organic matter has been observed to stimulate increased decomposition of older soil C through a process known as priming [18, 19]. This can offset the fresh C additions and has the potential to break down more stable forms of soil C, reducing the longevity of total soil C stocks . Consequently, it is important to quantify both decomposition of new C additions and older soil C separately. However, this is particularly difficult as they cannot be physically isolated in a practical way. Advances in isotopic analysis have provided an effective solution to this problem, exploiting differences in naturally occurring isotopic differences  or artificially introducing a unique concentration of 13C or 14C isotopes .
Miscanthus grown in most temperate zones provides an ideal model for isotopic partitioning of new and old C; the natural abundance of 13C isotopes in Miscanthus biomass (a C4 crop) is different to the 13C abundance in soils created from C3 plant matter . This allows pre-existing C to be quantified separately to the Miscanthus-derived C, in both CO2 emissions and soil C. Using this approach, quantifying the Miscanthus-derived C in soil is relatively simple and repeated sampling allows for simple linear rates of net Miscanthus C sequestration to be estimated . While quantifying the C4 and C3 soil C pools represents the net change, it does not differentiate between decomposition of old and new additions: how much of the fresh additions are retained? Ultimately the answer to this is site specific since decomposition, which drives the majority of losses, is governed by a wide range of abiotic and biotic factors . Consequently, if we are to predict the net impacts of a Miscanthus plantation on soil C stocks, we must also define accurate relationships between climatic variables and decomposition.
While biological activity and the quality of organic matter  are arguably the most important factors governing decomposition of plant matter into soils, temperature is also often cited (e.g. Davidson and Janssens ) as a key driver. In light of climate change likely to increase global temperatures, the temperature sensitivity of soil C decomposition is a major issue; globally, soils contain an estimated 2300 Gt C . In upland mineral soils alone, predicted losses due to a climate change related increase in decomposition are ∼40 Gt C by 2100 , meaning a substantial addition of CO2 to the atmosphere, on top of those already occurring, further contributing to climate change. Consequently, there is a potential for soil C sequestration under bioenergy crops like Miscanthus to play a key role in mitigating some of these losses, but the effects of temperature on decomposition rates (and therefore CO2 emissions) must also be taken into account. It is worth noting that many models assume decomposition of recent C additions is just as sensitive to temperature as decomposition of older SOM [29, 30, 31]. However, this is not always accurate [32, 33, 34, 35]. Therefore further emphasising the importance of understanding the influence of new crops and their C additions on SOM decomposition.
Measuring the CO2 emissions resulting from SOM decomposition as opposed to other sources of soil respiration (e.g. autotrophic respiration, Ra) can be difficult in situ. As a result, the temperature sensitivity of SOM decomposition is most commonly evaluated under laboratory conditions, with soils collected from a range of locations and incubated at progressively higher temperatures [36, 37]. While this is particularly effective at isolating the temperature effect from other confounding variables, and therefore creating realistic Q10 values [36, 38], it is not always an accurate depiction of responses under field conditions . Consequently, isotopic techniques have been used to partition soil respiration and isolate SOM decomposition in situ, thereby including important interactions with more realistic biotic conditions [21, 40]. To date, no studies have explicitly linked SOM decomposition to temperature under Miscanthus plantations but Zatta et al.  observed the displacement of C3-derived (pre-Miscanthus) C with C4-derived (sourced from Miscanthus only) additions. Although no direct assessment was made, this study hypothesised that the displacement was due to a priming effect on SOM decomposition.
The occurrence of priming is typically attributed to the interactions between live or fresh C inputs and older SOM, accelerating decomposition through microbial activity [42, 43]. The excess decomposition, and therefore priming effect, is often measured through additional CO2 respired and/or changes in C stocks [43, 44]. The mechanisms behind the priming effect have proven difficult to quantify [18, 44, 45] but studies suggest that fresh organic matter increases the availability of labile C and therefore increases microbial activity (and decomposition) . Subsequently, the increased microbial decomposition can exhaust available nutrients and when this occurs, more stable soil C compounds incur larger losses . As long as additions exceed losses, there will be a net C sequestration in soils, but it is important to quantify losses and gains separately as the stability of soil C compounds is just as important as the overall balance.
This study aims to partition soil respiration fluxes and soil C pools into Miscanthus-derived and ‘old soil’ (C3 soil - pre-Miscanthus) sources. Using stable isotope (13C) analysis to quantify the relative contribution of Miscanthus to CO2 losses and soil C gains, we present estimated rates of additions and losses from a 7-year-old commercial plantation in Lincolnshire, UK. A comparison of undisturbed controls and bare plots with no new C additions was used to estimate the effects of priming due to fresh Miscanthus additions. Given early indications of unchanging total soil carbon stocks, we postulated that annual Miscanthus-derived C additions would equal the annual losses from C3-derived SOM decomposition, therefore creating a net balance of soil C. Further, we hypothesised that losses from C3 soil stocks would be greater in control plots than in bare plots due to a priming effect.
Materials and Methods
The field experiment was conducted in a commercial (11.5 hectares, ha) Miscanthus plantation near Lincoln, Lincolnshire, UK. The soil type is a compacted loam that behaves like a heavy clay, with approximately 15, 36 and 49 % of, respectively, clay, silt and sand in the top 30 cm of soil. The top 30 cm of soil had a mean total C and N concentration of, respectively, 1.86 and 0.18 %, with a soil pH ranging from 6.8 to 7.3. The bulk density of the soil was 1.46 ± 0.03 g cm−3 for the 0–15 cm layer and 1.53 ± 0.02 g cm−3 for the 15–30 cm soil layer. The deeper soil profile showed an increasing bulk density (1.59 ± 0.20 g cm−3, 30–50 cm; 1.62 ± 0.10 g cm−3, 50–100 cm) and a clear B-horizon at the plough depth (30 cm). The site had a mean annual temperature of 9.9 °C and a mean annual precipitation of 605 mm (30-year average 1980–2009) with 300 mm falling between May and October. Miscanthus was established in 2006 at a density of 10,000 rhizomes ha−1. The crop was harvested annually in March, beginning in 2008, with biomass removal carried out only from 2009 onwards; yields (with 20 % moisture content) averaged 7.58 dry t ha−1 for 2009 to 2013, inclusive. Harvest in 2011 was pushed back to mid-April due to heavy rains in late March but no noticeable re-sprouting had occurred at the time of harvest in any year. Since planting, the Miscanthus plantation was only fertilised once in 2010, with phosphorus and potassium (Fibrophos, 660 kg ha−1). Land management prior to conversion to Miscanthus was a rotation of winter wheat and oilseed rape, with 3 years of wheat directly before conversion. Discussions with the landowners noted that the land use history of this field was arable cropping of C3 crops (specifically wheat, oil seed rape, barley or rye) for at least 30 years. More details about the soil and site management can be found in Robertson et al. .
Experimental Design and Environmental Variables
During the winter of 2008/2009 (before February 2009), five 15 m2 areas (blocks) within the plantation were randomly selected to host 10 treatment plots: one undisturbed control and one bare soil plot within each block (Fig. S1). Plots within each block were at least 5 m from each other and both controls and bare plots were marked out to be 1.6 m diameter circles (2 m2). At the time of creating these plots, the Miscanthus was still spreading to fill in gaps between plants; patchiness is common for Miscanthus stands, with Zimmermann et al.,  reporting the average gap size as 3.67 m2 in three or four year old commercial plantations. Therefore, no plant removal was necessary to establish all plots between plants, and consequently bare plots contained no established (i.e. living) rhizomes. The bare soil plots were prepared by trenching a 1.6 m diameter circle centred on a PVC chamber designed for CO2 measurements as described below. Trenches were 70 cm deep and lined with a double layer of thick polyethylene to exclude future root propagation; inspection for lateral root growth into the trenched plots revealed little evidence of Miscanthus roots but there was likely some that remained undetected. Although some studies report Miscanthus to be very deep rooting , the extent of this propagation is heavily influenced by the soil type . Indeed, Monti and Zatta  noted that in a 5-year old plantation, almost 90 % of all roots were in the top 35 cm and less than 0.5 % of root dry weight was below 75 cm. Consequently, 70 cm was deemed sufficient at this site, particularly because the soil became heavily compacted at this depth and at the time of trenching there was no visible evidence of plant biomass. After trenching, there was no living Miscanthus biomass in the soil of the bare plots, and any later root growth below the impermeable liner was assumed to have negligible contributions to the fluxes and pools measured by this study. In addition to trenching to exclude root growth under bare plots, the aboveground litter layer was carefully removed to expose bare soil but also to limit disturbance. After clearing the plots, a 20 mm2 mesh screen was placed over the plots to ensure the soil surface was kept clear of Miscanthus litter. During each monthly visit to the site any litter on the mesh screen was removed and weeds and mosses were cleared from the soil.
Monthly measurements of soil respiration and climatic conditions began in February 2009 and continued until March 2013 with a few exceptions: measurements were not taken between December 2010 and April 2011 and were unattainable during April 2012 due to site managers altering the harvest management schedules. At the same time and location of sampling soil respiration, volumetric soil moisture (0–6 cm depth) was measured using a ML2x Theta Probe and Meter HH2 (Delta T Devices, UK) as well as soil (0–7 cm depth) and air temperature measurements using a Tiny Tag temperature logger with integral stab probe (Gemini Data Loggers, UK). Measurements were taken for each soil respiration chamber individually; soil moisture was measured at three points around each chamber and an average taken for each plot.
Gas Sampling and Analysis
Soil respiration (i.e. CO2 emissions) was measured using the static chamber method described by , but was adapted to include the use of a pressure ‘vent’ (a Tedlar bag (SKC Ltd., UK) connected to the outside of the chamber using 4 mm gauge tubing ) designed to compensate for pressure changes within the chamber. The PVC chambers were 40 cm in diameter and 20 cm tall, with chamber design and deployment meeting the requirements outlined by de Klein and Harvey  with one exception: ratio of insertion depth to deployment time was only 6 cm h−1. Chambers were inserted approximately 3 cm into the soil surface with exact volumes noted. This avoided severing many of the fine roots that were found very close to the soil surface, allowing total soil CO2 flux measurements to include a more realistic estimate of belowground autotrophic respiration. Similar strategies have been recommended in different land uses by Heinemeyer et al.  and Mills et al. . All chambers remained in the soil for the duration of the study except for at times of harvest. At times of sampling, chambers were closed with a reflective aluminium lid, which had a rubber seal around the edge to prevent leakage. In accordance with de Klein and Harvey , chambers were enclosed for 30 min with one 10 ml (CO2) and one 20 ml (13CO2) sample taken every 10 min for a total of four time points collected at each plot. Gas samples were immediately transferred from the chamber headspace into gas-tight exetainers (Labco Ltd., UK) via a needle and syringe inserted into the self-sealing septa in the chamber lid. 10 ml exetainer gas samples were analysed for CO2 on a Perkin-Elmer Autosystem XL Gas Chromatograph (GC) fitted with a flame ionisation detector (FID). All results were calibrated against certified gas standards (BOC, UK)  and converted to a total flux reported as mg CO2-C m−2 h−1 in accordance with methods detailed in Holland et al. . The majority (>85 %) of measurements were taken between the hours of 10:30 and 14:30 to represent a diurnal average , with some exceptions due to field logistics. Between June 2011 and February 2012, three automated static chambers (ADC BioScientific Ltd., UK) in both control and bare plots were used to measure CO2 emissions every 3 h with an integrated Infra-Red Gas Analyser (IRGA). Although these automated chambers encountered a number of mechanical issues, their results were able to verify the assumption that daily average CO2 emissions were comparable to the exetainer measurements taken between 10:30 and 14:30 across different growth stages of the crop. The diurnal average for the control plots was observed to be between 12:00 and 13:00 over the entire 9 months (June to February).
Isotopic Analysis and Soil Respiration Partitioning
The 20 ml samples were analysed on an Isoprime trace gas isotope mass spectrometer (TG-IRMS) and relative abundances of 13C to 12C in CO2 were measured on an Isoprime isotope ratio mass spectrometer (IRMS; Isoprime UK), following its introduction to the instrument via a Trace gas pre-concentration unit (Isoprime, UK). Using a gas-tight syringe, 100 μl of gas was removed from each sample vial and injected into the Tracegas pre-concentrator. The sample was then diverted through a trap filled with magnesium perchlorate to remove water, after which the CO2 was cryogenically concentrated in glass lined cryofocussing traps immersed in liquid nitrogen. The CO2 was then separated from residual trace gases (e.g. N2O) on a 25 m gas chromatography capillary column filled with Poraplot Q, prior to entering the IRMS via an open split.
Reference standards of known isotopic composition (500 ppm, BOC calibrated to National Institute of Standards & Technology RM8562 (CO2 Heavy) & RM8564 (CO2 Biogenic)) were included after every fifteenth sample during analysis. Internal precision was better than ±0.2 ‰ for 13C for the reference standards. Isotopic data are reported using delta notation relative to the international standard Vienna Pee Dee Belemnite (V-PDB).
where FC4 is the fraction of respiration effluxed from all C4 sources (Miscanthus-derived), δ13CR is the isotopic signature of the gas collected from a plot, δ13CC3 is the isotopic signature of the C3 source (soil before Miscanthus was planted) and δ13CC4 is the isotopic signature of the C4 source (Miscanthus biomass). The fraction of respiration effluxed from C3 sources was calculated by subtracting FC4 from 1.
Since the Miscanthus was planted 3 years before the bare plots were established, there was still a C4 component of total respiration but this did not include any CO2 efflux from live biomass or fresh Miscanthus inputs (verified by no growth aboveground after trenching). As a result, C4-derived CO2 emissions from bare plots represented the decomposition of any Miscanthus plant material that remained after roots were severed through trenching and aboveground litter was first removed. This allows the soil respiration from bare plots to be split into two isolated components of soil respiration: recent C input (Miscanthus-derived; March 2006 to January 2009) and old soil C (pre-Miscanthus; before March 2006). This experimental design was underpinned by the assumption that there was no C4 organic matter in the soils prior to 2006 when the Miscanthus was established. This assumption was verified by isotopic analysis of soil sampled to 30 cm at a directly adjacent field in 2011. Both fields had received the same management prior to 2006 and the adjacent field continued to receive the same winter wheat-oil seed rape rotation after 2006; results confirmed no measurement above −27 ‰.
Soil Sampling and Bulk 13C Measurements
Estimates of oven dried root and litter plant matter (combined live and dead) from undisturbed control plots and bare plots at two soil sampling depths under a 7-year-old Miscanthus plantation in Lincolnshire, UK. Italicised values are totals over the top 30 cm
Root matter (oven dry t ha−1)
Litter matter (oven dry t ha−1)
2.61 ± 0.17
4.23 ± 1.21
1.85 ± 0.58
0.26 ± 0.12
4.46 ± 0.59
4.49 ± 1.20
0.21 ± 0.11
0.39 ± 0.13
0.18 ± 0.07
0.08 ± 0.03
0.39 ± 0.16
0.48 ± 0.14
Small subsamples of the ground soil were taken for analysis of C and N concentration through combustion in an elemental analyser (Costech ECS 4010, Italy). C and N stocks were estimated by relation to fixed site bulk densities (1.46 g cm−3 for 0–15 cm and 1.53 g cm−3 for 15–30 cm) and the depth layer . These bulk densities were taken from 15 replicates using a 4.8 cm diameter, 40 cm deep split tube sampler (Eijkelkamp Agrisearch Equipment BV, Giesbeek, Netherlands) and corrected for compression based on the depth of the hole. To ensure consistency when calculating C and N stocks, the resulting bulk density for 0–15 cm was verified against the PVC cores taken monthly. Bulk density traced throughout this period in both control and bare plots showed no significant compression or variation.
In October 2011, an adjacent field was sampled to 30 cm using the same procedure to provide a ‘time-zero’ for temporal analysis, as per the paired site (‘space-for-time’) approach. This assumed C stocks to be in equilibrium under this adjacent field—a reasonable assumption as the site had been used for the same arable crops for at least 30 years with annual tillage to 30 cm. This field had followed the same land use as the Miscanthus field prior to planting in 2006, was seeded with oil seed rape in 2006 and 2010, and winter wheat all other years. This arable field was tilled annually before seeding and fertilised three times each year with 35, 70 and 35 kg N ha−1. Before sampling in 2011, it had recently been harvested for winter wheat before being ploughed and cultivated again. Three replicates sampled at five random locations were cored using the same split tube sampler and split into 0–15 and 15–30 cm (n = 15). The soil was then freeze-dried, sieved to 2 mm and analysed for C and N. The same procedure to remove plant matter remains from the soil samples was applied. Further, these cores were analysed for bulk density and corrected for compression through coring (0–15 cm, 1.13 ± 0.17 g cm−3; 15–30 cm, 1.41 ± 0.15 g cm−3). C and N stocks were calculated using the field-specific bulk density values; no carbonates were detected in either field.
All soil samples were also analysed for 13C concentration with an IsoPrime IRMS (Isotopx, UK) interfaced with a Euro EA 3000 elemental analyser (EuroVector, Italy). Additionally, 50 samples of Miscanthus biomass were collected at a number of time points between May 2011 and March 2013, dried and analysed for 13C content with the same IRMS set up. These biomass samples comprised 10 measurements of recently senesced Miscanthus leaf litter, 10 samples of leaf matter taken from standing biomass, 10 samples of stem matter taken from standing biomass, 10 samples of belowground plant matter (from the soil cores) and 10 samples of the homogenised litter layer. As with gas samples, results were compared to reference standards and expressed as delta notation in relation to the V-PDB international standard. Although the belowground plant matter had a lower δ13C signal (−12.74 ± 0.07 ‰), all other Miscanthus biomass was between −11.40 and −12.44 ‰. Consequently, to ensure no negative values of FC4 in Eq. 1, −11.40 was used as the isotopic signature for Miscanthus (δ13CC4). Similarly, the 13C signals of the soil samples from the paired adjacent field site were used as the isotopic signature for C3 soil (δ13CC3) in the 0–15 and 15–30 cm layers: their values were −27.36 and −27.31, respectively. These values represented the assumed isotopic signature of soil below the Miscanthus field before it was planted in 2006. With these source signatures, Eq. 1 was used to calculate the relative components of C3- and C4-derived C in all samples collected from the Miscanthus plantation after February 2009. Relative contributions were applied to total C stocks to estimate C3 (pre-Miscanthus) and C4 (Miscanthus-derived) stocks individually. Soil cores from bare treatment plots were not analysed here.
Statistical Analyses and Calculating Rates of Change
Outliers of CO2 measurements were determined using the assumption of normal distribution to capture 95 % of the ‘real’ data. That is to say, to exclude those values outside 2× standard deviation of the population mean, as per Altman and Bland . Further, 13C data (and therefore the isotopic partitioning for that plot) was deemed an outlier if the source was outside the reference C3 and C4 delta values (−27.36 and −11.40 ‰ for C3 and C4, respectively). All statistical analyses were performed with R version 3.0.2. . User-defined growth phases of the crop were used to specify whether the Miscanthus was dormant (D), emerging (E) or growing (G). These each referred to 4 months of the year (November to February, March to June and July to October, respectively); the phases were found to be a significantly better predictor of CO2 efflux than the traditional Spring, Summer, Autumn, Winter divisions. Although true crop phenology would be more accurately described by growing degree days and key climatic events (e.g. first frost), keeping these three phases equally balanced allowed more intuitive comparisons of cumulative fluxes.
Due to gaps over the 4 years of measurements, the CO2 flux data was unbalanced and therefore comparisons between years were not made. Similarly, estimates of cumulative emissions would likely be biased towards the data present. Consequently, an average year was estimated using the data available. Fluxes for each time point were averaged across all years to determine the most realistic flux rate for an average day in a given month during the 4 years measured. Monthly averages were plotted against time and linear integration with the trapezoid rule used to calculate cumulative emissions over a given period, as described in Mancinelli et al. . These cumulative emissions were calculated for each block individually to determine an average value and degree of error. The same process was repeated for the amounts of C3- and C4-derived respiration after these had been calculated according to Eq. 1.
Non-linear regression analysis was used to establish the relationship between respiration rates and soil temperature measurements. This assumed an exponential relationship and applied the ‘nls’ function (nonlinear least squares) as a part of the base stats package in R to estimate a Q10 value according to Raich and Potter  and Luo et al. . This represented the change in respiration rate given a 10 °C rise in temperature. Although relationships were calculated using the whole dataset, a few extreme measurements of respiration skewed resulting estimates. Therefore, the temperature sensitivity was also determined using monthly averages. The results of the nls regression analysis were compared using an analysis of variance (ANOVA) to find that tests, using monthly data, were significantly (p < 0.001) more reliable and predicted relationships explained a larger proportion of the variance (higher r2). The difference between the predicted relationships and a linear increase (exponent = 1) was tested using an ANOVA. While the measurements taken on any given day are unlikely to be exact averages of that month, the relationship between soil respiration and soil temperature should be reliable the many data points over the 4 years measured.
After soil C stocks had been split into C3- and C4-derived components, the rates of change were calculated assuming linear relationships. Both a simple linear function with no weighting (lm in the base stats package) and a linear mixed model (lme in the nlme package ) with block as a random effect were used to estimate a slope given the measured data. For estimates of the accumulation rate of Miscanthus-derived (C4) C, the y-axis intercept was forced to 0 because an underlying assumption of the experiment is that there was no C4 organic matter present before the plantation. For C3-derived soil C stocks, however, the y-axis intercept was allowed to vary to what the models deemed most accurate based on the data. Time points were analysed on daily time steps to ensure the most accurate rate calculations. A pointwise 95 % confidence interval was defined around the estimated linear models to define uncertainty of the predicted relationship (and therefore calculated rates of change). Further, the significance of the predicted slope being different to 0 (i.e. no change over time) was also assessed with an ANOVA. Rates of change were calculated on a tonnes C per hectare per year basis and standard errors provided by way of uncertainty in the predicted slopes by linear regression (lm function) and linear mixed modelling (lme function).
Climatic conditions, as measured beside static chambers at the time of sampling, followed the trend of higher temperatures during the crop growth phase and showed a relatively constant soil moisture content. All data averaged by month showed July and February to have the highest and lowest soil temperatures, respectively (18.4 ± 0.5 and 1.5 ± 0.3 °C). February and April to have the highest and lowest soil moisture content, respectively (38.6 ± 0.8 and 17.3 ± 2.3 %) (Fig. S2). However, soil moisture values for April were only available for 2009 due to instrument error in 2010 and no access to the site in 2011 and 2012. Averaged by all temporal groups (e.g. season/year), no significant differences were found between control and bare plot measurements for soil temperature or soil moisture. The 4-year average soil temperatures were 11.5 ± 1.0 and 11.6 ± 1.0 °C and soil moisture measurements were 31.1 ± 1.3 and 29.5 ± 1.3 % for control and bare plots, respectively.
Isotopic Contributions to Soil Respiration within Crop Phase
Soil respiration (±1 s.e.) from a commercial Miscanthus plantation in the UK. Bare plots have no fresh inputs and crop phases are split into equal time frames (Dormant, Nov–Feb; Maturing, Mar–Jun; Growth, Jul–Oct)
CO2 efflux (mg CO2-C m−2 h−1)
Cumulative CO2 emissions (t CO2-C ha−1)
Relative C4-derived contribution (%)
14.22 ± 0.92
0.52 ± 0.05
24.73 ± 1.52
0.64 ± 0.03
63.15 ± 5.63
1.84 ± 0.19
33.99 ± 2.57
3.00 ± 0.22
9.16 ± 0.95
0.30 ± 0.02
19.64 ± 1.29
0.48 ± 0.02
30.38 ± 2.12
0.95 ± 0.04
19.83 ± 0.77
1.73 ± 0.07
Temperature Sensitivity of Soil Respiration
Miscanthus-Derived Contributions to Topsoil Carbon Stocks
Rates of change in soil (0–30 cm) C stocks in a Miscanthus plantation in Lincolnshire, UK. Rates are partitioned into C3-derived and C4-derived components using simple regression analysis as well as linear mixed models where repeated measures are accounted for
Rate of change (tC ha−1 yr−1)
0.235 ± 0.310
0.242 ± 0.304
−0.441 ± 0.254
−0.433 ± 0.248
0.593 ± 0.030
0.593 ± 0.031
−0.136 ± 0.369
−0.134 ± 0.368
−0.385 ± 0.373
−0.385 ± 0.373
0.265 ± 0.028
0.263 ± 0.032
Rates of Change in Miscanthus-Derived Soil Carbon Stocks
The rates of change to C3-derived and C4-derived soil C stocks were estimated using both linear regression and mixed models that accounted for repeated sampling from similar areas within the plantation. Results of both tests showed the same findings, albeit with slightly different rates (Table 3). Over the whole 0–30 cm layer, C4 soil C was seen to increase by 0.86 t C ha−1 yr−1 and C3 soil C to decrease by 0.83 t C ha−1 yr−1, though there is considerable uncertainty associated with the C3 estimated rates. Using a simple linear regression, rates to describe the total soil C in both the 0–15 cm layer and 15–30 cm layer have negative r2 values. This suggests the regressions are less accurate at describing the relationship than a horizontal line (i.e. unchanging soil C stocks). While losses of C3-derived C were of a similar magnitude to gains in C4-derived C, rate estimates were too uncertain (p > 0.05) to derive reliable conclusions. High levels of confidence (p < 0.001) could only be placed in the rates referring to C4-derived C accumulating within either topsoil layer (Table 3).
Miscanthus Contributions to Soil Respiration
Average C losses through soil respiration were estimated to be 3.00 ± 0.22 t C ha−1 yr−1 in control plots, with the majority (61 %) occurring between July and October, while the crop is at peak growth rates . Although this was similar to measurements from bare soil (55 % from the growth phase alone), cumulative emissions were significantly lower from bare soil throughout the year (1.73 ± 0.07 t C ha−1 yr−1). This difference is likely caused by live plant activity, and Ra in particular. Previous studies have shown that Ra often makes up a large proportion of total soil respiration and in mature forests some estimates are higher than 60 % . In arable systems, however, Rochette et al.  showed that in a Zea mays plantation in Canada, Ra was a maximum of 45 % of total soil respiration during the crop’s growth phase. Depending on the subtractive method used (C4 component only or totals), our study shows 48.4–50.5 % of total respiration during the whole growth phase is autotrophic (and from the associated rhizosphere). Total losses were 1.27–1.44 t C ha−1 yr−1 from Ra over a whole growing season and ∼0.9 t C ha−1 in the growth phase alone. It is worth noting that both methods of estimating Ra agreed well for all averaged data; differences between the methods were typically within the standard errors of each estimate.
While Ra (including the associated rhizosphere) represents C that is cycled through the ecosystem very quickly , Miscanthus-derived emissions from senesced biomass or SOM is much slower. This was particularly evident as the relative contribution of C4 sources to total soil respiration in bare plots did not decline significantly over the 4 years of measurements, despite bare and control plots starting from very similar conditions and only 3 years of inputs prior to root/litter exclusion. Further, the C4 component of bare soil respiration was, on average, higher than the C3 component in all phases and annually. With estimated losses of 0.83 ± 0.04 t C ha−1 yr−1 in C4 soil respiration between 2009 and 2013, we can assume that, during the first 3 years after establishing the plantation, at least 1.11 t C ha−1 yr−1 was added to the entire soil profile. Though it is unclear how much was added from severed roots as a result of trenching and what was added through natural root turnover before trenching. As time passes, the amount of labile C4 organic matter will decrease as it is decomposed and it is likely that more stable C compounds will remain with slower decomposition rates . Without fresh additions of C3 biomass, the same will be true for C3 soil C stocks.
Temperature Sensitivity of Old vs New SOM Decomposition
The relationship between soil temperature and total respiration from undisturbed soils cannot be accurately described using simple regression analysis due to the influence of Ra that varies with plant activity. In situ SOM decomposition, however, agrees well with the assumption of an exponential relationship. Our results showed that decomposition of old SOM (C3) increased considerably as temperature rose; each 10 °C increase saw CO2 emissions from C3 sources increase by ∼286 % (Q10 = 2.86). Although relatively high, this figure is in line with many other arable systems [70, 71] and research suggests that site-specific values are more closely linked to plant phenology and climatic conditions than to land use and management practices [72, 73]. Interestingly, the C3-derived respiration rates were similar in both control and bare plots. This suggests that inputs of Miscanthus plant matter, and effects of live belowground biomass, do not stimulate a noteworthy increase in microbial activity acting on C3 SOM decomposition. This does not mean the microbial community is the same as the adjacent arable land, just that the activity is similar. Fierer et al.  observed that the temperature sensitivity of SOM is more accurately related to its quality than to the age or extent of decomposition. While the temperature sensitivity of C3 SOM decomposition was not seen to change when fresh inputs were removed, the cumulative emissions from C3-sources were lower in control plots (0.58 vs 0.70 t C ha−1 yr−1). This suppression of emissions may be due to there being more labile C4-C available for microbial decomposition, resulting in less activity on the C3-C .
Decomposition of recent (2006–2009) additions to SOM appeared to be more sensitive to temperature than the decomposition of old SOM. The best fit exponential model explained a large proportion of the variation for measured monthly C4-derived respiration data from bare plots (r2 = 0.92) and indicated that a 10 °C rise in soil temperature would increase CO2 losses by 342 % (Q10 = 3.42). The increased temperature sensitivity of recent additions to SOM suggests that for this pool, the lability of its C is less limiting than that of older SOM C [35, 74, 75]. This has important consequences for the mean residence time (MRT) of C after its sequestration in soils. Although this study does not differentiate emissions from different soil fractions, it is important to note that if fresh additions of Miscanthus biomass are likely to be lost from the soil within a few years of addition then its potential climate change mitigation by acting as a C sink is not a long-term solution. Previous studies have shown that the MRT of C sequestered in soils can be strongly linked to climatic conditions , clay content  and fresh inputs . Our results suggest that recent additions are more sensitive to temperature than older additions but due to the lack of data we could not create reliable estimates of temperature sensitivity for each year individually. Annual Q10 estimates could provide an indication of how long the recent C additions remain more sensitive than older SOM C. However, the use of the Q10 approach must be treated with caution as it typically underestimates the sensitivity at high temperatures  and its relationship to the recalcitrance of decomposed substrate is currently unclear [79, 80, 81, 82]. Simultaneous measurements of soil C stability and annual Q10 estimates are needed to help resolve this relationship, and therefore determine how soil respiration is changed as the lability of the new SOM gets closer to that of the older SOM. Further, more recent studies also suggest that specific microbial processes, including growth and priming effects should also be considered to further our understanding of the temperature sensitivity of SOM decomposition [83, 84].
Changes in Topsoil Carbon Stocks
At the same site, a twinned study noted that total topsoil (0–30 cm) C stocks did not change significantly over the first 7 years of growth . However, we found Miscanthus-derived (C4) SOM to accumulate steadily over the same period, at a rate of 0.86 t C ha−1 yr−1 (0.59 in the 0–15 cm layer and 0.27 in the 15–30 cm layer). Despite considerable variation between time points, the confidence in these calculated rates of accumulation being significantly above 0 was high, particularly for the 0–15 cm layer. After 7 years of growth, in March 2013, the C4 component accounted for 10.3 % of total 0–15 cm C stocks and 8.4 % in the whole 0–30 cm. This compares well with Hansen et al.  who noted 13 % of 0–20 cm soil C was C4-derived in a 9-year-old Miscanthus plantation. Due to the measured variability in C3-derived soil C, any losses since measurements began in 2009 were negligible (i.e. not significantly different to a ‘no change’ scenario). This variation was however sufficient to suppress the significant accumulation of Miscanthus-derived C in topsoil (0–30 cm) stocks (6.80 t C ha−1 after 7 years) and suggest no significant change in the overall C stock. Consequently, a rate of C3-C loss similar to that estimated in this study (∼0.83 t C ha−1 yr−1) could be expected. The variation in C3-derived soil C measurements could not be explained by those variables measured, but spatial heterogeneity is likely to account for much of the difference noted between and within time points . Additionally, only three data points represent the change over the first 5 years and therefore their influence in regression analysis over time is high in comparison to the bulk of measurements that occurred over the last 2 years. That said, this approach is the best available to provide estimates of rates, and our findings compliment those in Robertson et al.  by helping to explain unchanging total soil C stocks: new SOM is likely to be displacing old SOM, resulting in a net balance of total topsoil C.
Evidence for Priming of SOM
A comparison of partitioned respiration between treatments showed no significant difference in C3-derived emissions; on average, CO2 respired from C3 sources under control plots was 0.12 t C ha−1 yr−1 lower than under bare plots. This suggests that decomposition of C3 SOM is slower under control plots where fresh inputs and live roots are present. This indicates no apparent priming effect as a result of fresh Miscanthus inputs. Although soil C stocks from bare plots were not studied here, the lack of increased respiration is good evidence that decomposition of old (>8 years) SOM was not accelerated over the measurement period. When measuring the conversion of C3 grassland to Miscanthus, Zatta et al.  noted that grassland SOM decreased more in the presence of higher belowground biomass, hypothesising that these losses were due to rhizosphere priming. While their study used trial sites of 25 m2 and achieved higher yields, the soil type, climatic conditions, plantation age and topsoil C stocks were similar to those reported here. The differences between these two studies may be due to the quantity and quality of the C3 SOM; generally perennial ryegrass (the prior land use in Zatta et al. ) has more fine root biomass in topsoils , lower C:N  and lower lignin content  than winter wheat (the prior land use in our study) [89, 90]. This may suggest that while priming does act on the grassland SOM, it does not on the winter wheat SOM.
In our study, rhizosphere priming is more likely to be detectable than priming effects as a result of C fertilisation through organic matter inputs. Further, undisturbed soils, like those below the studied Miscanthus plantation, have less oxygen available for decomposition and therefore microbial activity is stimulated more by the influence of root biomass . Consequently, emphasis for this discussion is placed on the influence of the Miscanthus root activity. Low yields are a good indicator that root biomass at our site is lower than in more productive plantations. Therefore, the amount of rhizospheric deposition will be lower, thus influencing any rhizosphere priming. Additionally, Hromádko et al.  observed Miscanthus root exudation and rhizodeposition to be low, even in comparison to similar C4 crops like maize [93, 94]. Kaňová et al.  also observed that rhizosphere respiration under Miscanthus was limited by nitrogen, potassium and calcium, further reinforcing the idea that a lack of priming in our study may, in part, be due to the high C:N of Miscanthus biomass. Other studies have also suggested a mechanistic links between N-availability and priming SOM decomposition [96, 97]. Rhizospheric priming in particular is intrinsically linked to N-mineralisation, with the extent of live root biomass being strongly linked to the microbial activity associated with decomposition. Indeed, Zhu et al.  found that the presence of roots increased microbial biomass C by up to 28 %, leading to positive soil C priming of 45–79 % and increased N-mineralisation of 10–52 %. This provides further evidence that low N availability may limit soil C priming at our site. A lack of priming, however, removes one possible explanation for the unchanging topsoil C stocks and indicates that a simple substitution of old soil C for new additions may be more likely.
This research highlights the importance of partitioning new and old C dynamics in order to best quantify the relationships between driving variables and the key fluxes that define a site’s long-term environmental sustainability. Through combined input manipulation treatments and isotopic partitioning we saw that soil respiration was dominated by emissions from Miscanthus-derived sources; belowground Ra accounts for ∼50 % of the annual emissions and heterotrophic respiration of recently added (≤7 years) SOM accounts for approximately 30 %. Further, there was no apparent priming effect through rhizodeposition or aboveground litter inputs. In fact, less emissions from decomposition of older (>7 years) SOM were seen from those plots with fresh inputs. In addition, old SOM was seen to be less sensitive to temperature than newer SOM. Despite substantial emissions of around 3 t C ha−1 yr−1, topsoil (0–30 cm) C stocks did not change significantly during the 7 years after the Miscanthus was planted. The accumulation of fresh Miscanthus inputs was seen to displace losses from old SOM. While the unchanging topsoil C stocks contrast substantial gains observed in similar Miscanthus plantations across Europe, the accumulation of Miscanthus-derived C is in excess of the average reported in the Poeplau and Don  multisite evaluation. From this study, it is unclear why decomposition of old SOM exceeds that observed elsewhere but, importantly, if the sequestration of Miscanthus-C is in stable forms, the loss of the more labile SOM is of less concern within the context of sustainability assessments. With Miscanthus and many other bioenergy crops, we have a prime opportunity to help mitigate climate change through displacing fossil fuel energy generation while removing CO2 from the atmosphere and storing it in soils. However, to correctly assess the impacts of these bioenergy crops, we must first establish what the key drivers of sequestration are, as well as the realised impacts of bioenergy crops on this sequestration.
The authors would like to thank the Centre for Ecology & Hydrology and Shell for providing a joint PhD studentship grant award to Andy Robertson (CEH project number NEC04306). We are also grateful to Sean Case at the University of Copenhagen for help with fieldwork and Helen Grant for help with isotopic analysis.
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