Article

Journal of Structural and Functional Genomics

, Volume 13, Issue 4, pp 233-239

The crystal structures of the α-subunit of the α2β2 tetrameric Glycyl-tRNA synthetase

  • Kemin TanAffiliated withCenter for Structural Genomics of Infectious Diseases, University of ChicagoComputation Institute, University of ChicagoStructural Biology Center, Biosciences, Argonne National Laboratory
  • , Min ZhouAffiliated withCenter for Structural Genomics of Infectious Diseases, University of ChicagoComputation Institute, University of Chicago
  • , Rongguang ZhangAffiliated withCenter for Structural Genomics of Infectious Diseases, University of ChicagoComputation Institute, University of ChicagoStructural Biology Center, Biosciences, Argonne National Laboratory
  • , Wayne F. AndersonAffiliated withCenter for Structural Genomics of Infectious Diseases, University of ChicagoMolecular Pharmacology and Biological Chemistry, Northwestern University
  • , Andrzej JoachimiakAffiliated withCenter for Structural Genomics of Infectious Diseases, University of ChicagoComputation Institute, University of ChicagoStructural Biology Center, Biosciences, Argonne National Laboratory Email author 

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Abstract

Aminoacyl-tRNA synthetases (AARSs) are ligases (EC.6.1.1.-) that catalyze the acylation of amino acids to their cognate tRNAs in the process of translating genetic information from mRNA to protein. Their amino acid and tRNA specificity are crucial for correctly translating the genetic code. Glycine is the smallest amino acid and the glycyl-tRNA synthetase (GlyRS) belongs to Class II AARSs. The enzyme is unusual because it can assume different quaternary structures. In eukaryotes, archaebacteria and some bacteria, it forms an α2 homodimer. In some bacteria, GlyRS is an α2β2 heterotetramer and shows a distant similarity to α2 GlyRSs. The human pathogen eubacterium Campylobacter jejuni GlyRS (CjGlyRS) is an α2β2 heterotetramer and is similar to Escherichia coli GlyRS; both are members of Class IIc AARSs. The two-step aminoacylation reaction of tetrameric GlyRSs requires the involvement of both α- and β-subunits. At present, the structure of the GlyRS α2β2 class and the details of the enzymatic mechanism of this enzyme remain unknown. Here we report the crystal structures of the catalytic α-subunit of CjGlyRS and its complexes with ATP, and ATP and glycine. These structures provide detailed information on substrate binding and show evidence for a proposed mechanism for amino acid activation and the formation of the glycyl-adenylate intermediate for Class II AARSs.

Keywords

Gly-tRNA synthetase Catalytic subunit ATP binding Glycine binding