# Pulse design for broadband correlation NMR spectroscopy by multi-rotating frames

## Authors

- First Online:

- Received:
- Accepted:

DOI: 10.1007/s10858-013-9714-1

- Cite this article as:
- Coote, P., Arthanari, H., Yu, T. et al. J Biomol NMR (2013) 55: 291. doi:10.1007/s10858-013-9714-1

## Abstract

We present a method for designing radio-frequency (RF) pulses for broadband or multi-band isotropic mixing at low power, suitable for protein NMR spectroscopy. These mixing pulses are designed analytically, rather than by numerical optimization, by repeatedly constructing new rotating frames of reference. We show how pulse parameters can be chosen frame-by-frame to systematically reduce the effective chemical shift bandwidth, but maintain most of the effective *J*-coupling strength. The effective Hartmann-Hahn mixing condition is then satisfied in a multi-rotating frame of reference. This design method yields multi-band and broadband mixing pulses at low RF power. In particular, the ratio of RF power to mixing bandwidth for these pulses is lower than for existing mixing pulses, such as DIPSI and FLOPSY. Carbon-carbon TOCSY experiments at low RF power support our theoretical analysis.

### Keywords

NMRPulse designIsotropic mixingTOCSYHOHAHA## Introduction

Broadband homonuclear mixing pulses are required for protein spectroscopy; however, they must be used at sufficiently low power and for sufficiently short times to avoid probe damage and sample heating (Hartmann and Hahn 1962; Müller and Ernst 1979; Braunschweiler and Ernst 1983; Ernst et al. 1987; Cavanagh et al. 2006). However, standard HOHAHA mixing pulses require high RF power to cover large bandwidths of chemical shift frequencies (Glaser and Quant 1996). This motivates the design of shaped mixing pulses which have high bandwidth-to-power ratios (Glaser and Quant 1996; Rucker and Shaka 1989; Kadkhodaie et al. 1991; Carlomagno et al. 1996; Bennett et al. 2003; Zuiderweg et al. 1996). Such pulses are especially useful for experiments at high field, on the carbon channel, and/or with long mixing times.

Construction of a *nutating* frame, in which the spins precess about an axis defined by their chemical shift offset plus the applied RF field, allows the effective offset bandwidth to be manipulated, for example for slice-selection in NMR imaging (Hoult 1980; Hedges and Hoult 1988) and dual band TOCSY (Grzesiek and Bax 1995). We have generalized the nutating frame approach for designing TOCSY pulses in two key ways. Firstly, not only can a nutating frame induce a dual band structure, as in Grzesiek and Bax (1995), but it can also be used to reduce the effective bandwidth over a *single* spectral region. Secondly, this scheme can be harnessed *iteratively* via successive rotating frame constructions which are each generated by appropriate modulation of the RF field, and the effective bandwidth is modified by each new rotating frame. This allows us to design broadband or multi-band pulses for polarization transfer. In particular, for dual band pulses our first rotating frame construction sets up two spectral bands in a similar way to Grzesiek and Bax (1995). Our approach is then to construct a further rotating frame to reduce the effective bandwidth in each of the bands, and then to repeat this scheme arbitrarily many times until the effective bandwidth is satisfactorily small.

We present a design method for TOCSY pulses with large bandwidths and low RF amplitude. These pulses are created analytically, i.e. without numerical searches or optimizations. Instead, we combine familiar Hamiltonian transforms (choice of axes, rotating frames, the rotating wave approximation) to choose pulse parameters systematically while the Hamiltonian is expressed in a series of different frames of reference. We show that the effective chemical shift bandwidth changes in each new frame. In fact, the bandwidth can be driven to near zero by choice of pulse parameters. At the same time, the coupling tensor is largely maintained. That is, we use the pulse to construct an effective Hamiltonian which is dominated by couplings, rather than mismatched chemical shift frequencies. This Hamiltonian satisfies the Hartmann-Hahn mixing condition, so that homonuclear cross-polarization takes place. At the end of the mixing pulse all spins are in phase, although they pass out of phase temporarily during the pulse.

Our design method yields mixing pulses with larger bandwidth-to-RF amplitude ratios than FLOPSY and other well-known sequences (Glaser and Quant 1996). Moreover, we note that most common HOHAHA mixing sequences were designed using numerical optimizations (Glaser and Quant 1996). However, for our purely analytical method the computational load is negligible and new pulses tailored to a particular experimental application can be designed very quickly.

Firstly, we address bandwidth reduction, and show how the pulse parameters combine with changes of frame to reduce the effective bandwidth. There are several details we consider: the form of frame changes, the recursions which generate the pulse profile, and the power-to-bandwidth ratio. Next we analyze how the coupling tensor is transformed under the frame changes, so that the Hartmann-Hahn mixing condition can be satisfied in the small-bandwidth frame. Finally, we describe the utility and performance of these pulses in experiment and present experimental spectra.

## Theory

_{I}

^{eff}− ω

_{S}

^{eff}| ≪

*J*

_{IS}

^{eff}shows that a necessary condition for mixing is a small effective chemical shift difference (Glaser and Quant 1996). In a sample with many spins (e.g. a protein) this means that the effective chemical shift bandwidth must be small relative to the couplings. In this section, we consider an ensemble of isolated spin-1/2 nuclei with a large chemical shift bandwidth. We then choose pulse parameters in a way which ensures that there exists a multi-tilted, multi-rotating frame of reference in which the effective bandwidth is arbitrarily small. For an isolated spin-1/2, the chemical shift and RF Hamiltonians are

*u*(

*t*) and

*v*(

*t*) and express the Hamiltonian in a new frame of reference. Considered in the new frame the Hamiltonian’s form is unchanged; however, the effective chemical shift bandwidth is reduced. We can repeat this process arbitrarily many times to drive the effective chemical shift bandwidth to near zero. After the kth change of frames, the Hamiltonian is

*k*) indicate the frame in which the Hamiltonian is expressed. We retain free parameters

*u*

_{k}(

*t*) and

*v*

_{k}(

*t*), which serve as the effective RF pulse applied in the kth frame. The effective chemical shifts in successive frames ω

_{k}obey the recursion (derived below)

_{n}for

*n*> 0 can be engineered from the original bandwidth of ω by choice of free parameters \(\{f_{1}, f_{2},\dots , f_{\rm n}\}\) and \(\{u_{0}, u_{1},\dots, u_{{\rm n-1}}\}. \) These free parameters are frequencies and amplitudes of simultaneously-applied oscillating RF fields. The chemical shift ω

_{k−1}takes on a range of values for different spins in the sample, and (2) tells us the range of values for ω

_{k}(the effective chemical shift in a new frame of reference). We will choose the pulse parameters to achieve a reduced effective bandwidth. In particular, we can choose pulse parameters frame-by-frame so that |ω

_{n}| ≪ |

*v*

_{n}| regardless of the original chemical shift. Therefore, in the nth frame, it is straightforward to execute a uniform pulse with flip angle α =

*v*

_{n}

*T*. Finally, we arrange things so that all the frames we have constructed have aligned

*y*-axes at the final time

*T*. This ensures that whatever rotation about the

*y*-axis has been achieved in the nth frame is also valid in the original frame.

### RF pulse

*u*

_{k}(

*t*) =

*u*

_{k}(0), and modulated along the y-axis

*v*

_{k}(

*t*) = \(2v_{{\rm k+1}}(t)\cos(f_{{\rm k+1}}t)+\)\(2u_{{\rm k+1}}(t) \sin(f_{{\rm k+1}}t). \) We will resolve this modulation such that (

*u*

_{k+1}(

*t*),

*v*

_{k+1}(

*t*)) is an arbitrary effective RF pulse applied in the subsequent frame. Notice that the Hamiltonian is time-invariant in the

*x*–

*z*plane. Now we tilt the reference frame such that the static part of the field is aligned with the

*z*-axis (as in Fig. 1). The required tilt angle is θ

_{k}(ω

_{k},

*u*

_{k}) = atan2(

*u*

_{k}, ω

_{k}) about the

*y*-axis. Note that for each chemical shift value the frame is tilted differently; each spin now has its own set of co-ordinate axes. We adjust the Hamiltonian according to

*z*-axis, and the time-varying part of the field is along the

*y*-axis. We now construct a rotating frame about the new

*z*-axis (as in Fig. 1), where the rotation rate is the

*f*

_{k+1}. That is, the rotating frame precession rate is the same as the modulation frequency of

*v*

_{k}(

*t*). The Hamiltonian becomes

*x*–

*y*plane into slowly and rapidly oscillating parts. The rapidly oscillating terms average to zero over relatively short timescales, so their net effect is small compared to the slower terms. For the purpose of developing a design algorithm, we neglect these fast terms. This is the rotating wave approximation (RWA) (Ernst et al. 1987). However, since we make the RWA for terms that are kHz from resonance (it is most usually evoked for terms that MHz off resonance), we will demonstrate its validity for our pulses in detail below. Under this approximation, we have

*I*

_{z}component is the effective chemical shift in frame k+1, so the original chemical shift bandwidth/band-structure is mapped to a new

*effective*bandwidth/band-structure. (4) is equivalent to (1) and (2).

*u*

_{k}} and modulation frequencies {

*f*

_{k}} (these are also rotating frame precession rates) such that the recursion (2) transforms a large chemical shift bandwidth into a small effective bandwidth. We show how to choose these free parameters below. Figure 2 shows a typical pulse profile. Figure 3 is a schematic of the design process: each application of (2) further compresses the effective chemical shift range.

### Frame alignment and choice of modulation frequencies

*U*

_{k+1,k}(ω

_{k},

*t*) which transform the Hamiltonian and quantum state from the kth frame to the next (

*k*+ 1) frame. These time-varying frame changes are defined differently for each chemical shift value. We repeat this several times, so that we can apply (2) sufficiently many times to reduce the effective bandwidth.

*U*

_{k+1,k}(ω

_{k},

*t*) comprises a tilt about the

*y*-axis by θ

_{k}(ω

_{k},

*u*

_{k}), followed by a rotation about the

*z*-axis at rate

*f*

_{k+1}:

_{k}} are calculated from the original chemical shift ω and the pulse parameters by (2). Clearly,

*f*

_{j}

*T*= 2

*m*

_{j}π, where

*T*is the pulse time and {

*m*

_{j}} are integers. In this case,

*y*-axis, regardless of the values of the effective chemical shifts in each frame \(\{\omega_{1},\omega_{2},\dots, \omega_{{\rm k}}\}. \) This ensures that at the beginning and end of the pulse, the

*y*-axis of each multi-tilted, multi-rotating frame is aligned with the

*y*-axis in the original frame. However, during the pulse the frames are generally mis-aligned for different chemical shift values.

### Choice of pulse amplitudes

*y*-component of the pulse profile obeys the recursion

*v*

_{n}, and {

*f*

_{1},

*f*

_{2}, … ,

*f*

_{n}} are design parameters. Finally, we set

*v*

_{n}constant and

*u*

_{n}= 0. The Hamiltonian in the nth frame is

_{n}| ≪ |

*v*

_{n}| then α =

*v*

_{n}

*T*is the flip angle about the

*y*-axis.

_{0}| ≤

*C*

_{0}to a small final bandwidth |ω

_{n}| ≤

*C*

_{n}≪

*C*

_{0}. The appropriate pulse amplitudes {

*u*

_{k}} to achieve this goal are given by a simple recursion. Notice from (2) that \(\omega_{{\rm k}} \in [|u_{{\rm k-1}}|-f_{{\rm k}}, \sqrt{C_{{\rm k-1}}^{{ 2}} + u_{{\rm k-1}}^{{ 2}}}-f_{{\rm k}}]. \) If we choose

*f*

_{k}to center the bandwidth at ω

_{k}= 0, then

*C*

_{n}(bandwidth in the nth frame) and frequencies \(\{f_{1}, f_{2},\dots , f_{{\rm n}}\}\) obeying (6). Clearly, we ought to choose

*C*

_{n}≪ |

*v*

_{n}| to execute a uniform rotation (flip angle α =

*v*

_{n}

*T*) around the

*y*-axis over the bandwidth

*C*

_{0}in the original frame of reference. For a chosen set of modulation frequencies obeying (6) and a desired effective bandwidth

*C*

_{n}, the pulse amplitudes {

*u*

_{k}} and the working bandwidth in the original frame

*C*

_{0}, are specified by (9) and (10). The pulse designer should choose the frequencies to achieve a satisfactory working bandwidth. Examples are \(f_{4}, \dots, f_{1} \propto 1, 2, 4, 8\) or 1, 2, 5, 10, or

*f*

_{3},

*f*

_{2},

*f*

_{1}∝ 1, 3, 7.

*y*-axis. For a density matrix expressed in the final frame ρ

^{(n)}(0) =

*I*

_{y}, we have that for all time ρ

^{(n)}(

*t*) =

*I*

_{y}; the nuclei are spin-locked to the

*y*-axis. Since the

*y*-axes in all tilted, rotating frames are aligned at time

*T*, we also have that ρ(0) = ρ(

*T*) =

*I*

_{y}in the original frame of reference (

*k*= 0). That is, at the beginning and end of the pulse all spins are in phase along the

*y*-axis (they are not in phase

*during*the pulse). For example, Fig. 4 shows via simulation how magnetization returns to in-phase along the

*y*-axis after the pulse for a range of chemical shift values.

In a sense, we have used frame changes to simplify the calculation of the effective Hamiltonian (Haeberlen and Waugh 1968). As is the case for average Hamiltonian theory (Llor 1992; Haeberlen 1976), the Magnus expansion (Magnus 1954; Klarsfeld and Oteo 1989), and the Floquet expansion (Floquet 1883; Leskes et al. 2010), we have constructed a time-invariant effective Hamiltonian which is valid at the endpoints of each time-period. However, our iterative scheme is not general; it is specific to the RF pulse form we suggest. The advantage is that the pulse design proceeds recursively and analytically. Each free parameter can be chosen in turn by consideration of (2) (and (11) for coupled spins), without using the full Magnus or Floquet machinery. Rather, we use some of the most fundamental and familiar NMR concepts (Cavanagh et al. 2006; Ernst et al. 1987) (choice of axes, rotating frames, the RWA, sinusoidally modulated fields) to construct a time-varying RF pulse under which the effective time-invariant Hamiltonian has the desired form.

### Robustness to RF inhomogeneity

Although our pulse design method does not explicitly account for variations in RF inhomogeneity, we nonetheless observe insensitivity to RF power variations in computer simulations (as shown in Fig. 4) and good performance in experiments for all pulses we have designed and tested. This can be understood by consideration of a slightly modified version of (2)—even under RF inhomogeneity, we still see a similar systematic frame-by-frame reduction in effective chemical shift bandwidth.

_{k}}. Since our algorithm is, by design, robust to variations in effective chemical shift in each frame, this change would not prevent adequate performance for σ ≈ 1. The recalculated ω

_{k}will typically remain within the design bandwidth |ω

_{k}| ≤

*C*

_{k}. The exception is at the edges of the bandwidth in frame k − 1, where the (recalculated) effective chemical shift ω

_{k}could fall outside of the design bandwidth

*C*

_{k}. Chemical shifts slightly outside of the design bandwidth are still reduced via subsequent frame changes; nonetheless, this effect is a source of error. RF inhomogeneity leads to larger than desired final-frame effective chemical shifts; however, simulations (e.g. Fig. 4) and experiments confirm that the effect is small.

The spin-locking nth frame Hamiltonian is now *H*^{(n)} = ω_{n}*I*_{z} + σ *v*_{n}*I*_{y}. This will still achieve spin-locking provided the (recalculated) effective chemical shift remains small compared to |*v*_{n}|.

### The effect of neglected off-resonance terms

The derivation of our design method relied on the RWA to generate (4). Rapidly oscillating terms average to zero over relatively short timescales, and so their overall effect is smaller than the slower terms. However, these terms can have a non-negligible effect on the dynamics, and this can be captured by a time-invariant correction to the Hamiltonian called the Bloch-Siegert shift (Bloch and Siegert 1940). For the familiar transform from the laboratory frame to the frame rotating at the Larmor frequency, the correction is negligible and is safely ignored. However, for the kHz frequency terms we have suppressed the shift is not negligibly small for the first few frame changes. In this subsection we demonstrate how the Bloch-Siegert shifts for off-resonance terms change the effective chemical shifts in each frame. Our method is, by design, robust to differing chemical shift in successive frames, so these corrections do not ruin our pulse design method.

The Bloch-Siegert shift can be calculated using three frame changes (Sacolick et al. 2010). A rotating frame transformation renders the far off-resonance term time-invariant, a tilt by a small angle combines the this time-invariant term with the chemical shift offset, and finally the rotating frame transformation is reversed. The net result is a correction to the chemical shift offset with magnitude *B*^{2}/2(ω − 2*f*), where *B* is the amplitude and ω − 2*f* is the distance from resonance for a circularly polarized term with frequency 2*f*.

*x*-axis and sines along the

*y*-axis (the exceptions are terms proportional to

*v*

_{n}and with frequencies near ± 2

*f*

_{k}for the kth frame change. These are extremely low amplitude, highly oscillatory, and therefore neglected here). We rewrite (3) as

*a*

_{j},

*f*

_{j}} are the amplitudes and frequencies of far off-resonance terms. Note that these terms are distributed above and below resonance, which leads to some cancellation amongst Bloch-Siegert shifts with opposite signs.

*f*

_{m}of one of the off-resonance terms, so that

*y*-axis by a small angle β

_{m}. This means that all the

*x*-axis terms are also tilted into the

*x*−

*z*plane:

_{m}, highly oscillatory terms proportional to \((\cos(\beta_{{\rm m}}) - 1)\) or \(\sin(\beta_{{\rm m}})\) have very little effect on the dynamics, and so we can safely neglect the last two lines of the previous equation. Finally we reverse the rotating frame transformation to obtain

_{k}+

*a*

_{m}

^{2}/ (2ω

_{k}−2

*f*

_{m}). This can be shown by a Taylor expansion of the square root in the previous equation, with the parameter

*a*

_{m}

^{2}/ (ω

_{k}−

*f*

_{m})

^{2}. The Hamiltonian no longer contains a circularly polarized term with frequency

*f*

_{m}. This process can now be repeated for the other off-resonance terms still present in the Hamiltonian.

Crucially, the rotating frames used to derive all corrections have that *Tf*_{m} is an integer multiple of 2π, so these all align at stroboscopic times. However, to derive the corrections we used tilts about the *y*-axis by angles β_{m}, and had static terms along the *z* and *x* axes. In other words, the Bloch-Seigert corrections are contained in the *x*–*z* plane. Recall that our design algorithm combines all time-invariant terms in the *x*–*z* plane and treats them as the effective chemical shift in the next frame. Since our method is robust to variations in chemical shift in successive frames, the Bloch-Siegert shifts do not invalidate (1); they merely reduce the precision with which (2) keeps track of the effective chemical shifts in each frame. As for the case of RF inhomogeneity, the relevant correction reduces the precision of (2), but does not threaten the overall architecture of our design method.

In simulations we find the responses to our RF pulses are well captured by (4) without any Bloch-Siegert corrections (see Figs. 4 and, especially, 5), so we have elected to preserve the simplicity of our design method by neglecting these corrections during pulse design. Of course, our simulations employ the full dynamics; we evoke the RWA only to derive the pulse design algorithm.

### Maintaining the *J*-coupling

The Hartmann-Hahn mixing condition says that cross-polarization will occur provided that the effective *J*-coupling between two spins is large relative to the separation in their effective chemical shift frequencies. We have shown that in the nth tilted, rotating frame the effective chemical shift bandwidth is small for an ensemble of isolated spins-1/2. We now consider isotropically coupled pairs of spins-1/2, and transform the coupling tensor into the nth frame so that the effective coupling can easily be calculated from the pulse parameters.

*I*and

*S*is

*I*is tilted by θ = atan2(

*u*

_{0}, ω

_{I}), while spin

*S*is tilted by ϕ = atan2(

*u*

_{0},ω

_{S}). The time-averaged coupling Hamiltonian in the first tilted, rotating frame is

*u*

_{0}| and the chemical shift bandwidth. This equation has previously been used for nutating frame spectroscopy (Grzesiek and Bax 1995). We now generalize this calculation for the case of a series of rotating frame constructions, since subsequent frame tilts and rotations further truncate the effective coupling strength. If the tilt angles for the kth change of frames are θ

_{k}(for spin

*I*) and ϕ

_{k}(for spin

*S*), then the components of the average coupling Hamiltonian evolve as

*a*

_{0}=

*b*

_{0}= 2π

*J*. We retain only the average coupling after each frame change, and suppress the parts that oscillate at multiples of frequency

*f*

_{k}. These terms average out during the pulse. In practical applications,

*J*is tens of Hertz, while

*f*

_{k}is kilohertz, so the suppressed terms are very weak and highly oscillatory, and therefore are negligible.

Two cases in particular are worth exploring: firstly, when ω_{I} and ω_{S} are equal. This is the main diagonal of a two dimensional spectrum. In this case, for all *k*, (*a*_{k} + *b*_{k})/2 = 2π *J*, so that \(I_{{\rm y}} \rightarrow S_{{\rm y}}\) in time *T*_{mix} = 1/(2*J*). Secondly, when ω_{I} = −ω_{S} and the separation is large, so that θ_{1} = ϕ_{1} + π. This occurs in dual-band pulses (see Fig. 8). In this case, *a*_{1} = −2π *J* and *b*_{1} = 0; that is, an effective coupling is maintained that is orthogonal to the spin-locking axis. Since (*a*_{k} + *b*_{k})/2 = −π *J*, dual-band pulses will transfer polarization between a scalar-coupled pair in time *T*_{mix} = 1/(*J*).

*T*be the pulse time,

*r*be the number of times the pulse is repeated, and

*V*(

*t*) be the unitary solution to the Schr\(\ddot{{o}}\)dinger equation for the coupled two spin system, expressed in the nth frame of reference. At times

*t*=

*rT*, the nth frame is tilted about the

*y*-axis with respect to the original frame (see (5)). This tilt commutes with density matrices that are effectively spin-locked to the

*y*-axis, which means

*V*(

*t*) is adequate for modeling in-phase cross-polarization. Then

*a*

_{n}and

*b*

_{n}are generated by (11),

*v*

_{n}is the time-invariant effective pulse applied in the final frame, and the two ω

_{n}are generated by applying the recursion (2) to the initial chemical shifts ω

_{I}and ω

_{S}(by design, these ω

_{n}values are much smaller than

*v*

_{n}). These constants can be calculated from the pulse parameters and chemical shifts much faster than a full simulation of the time-varying Hamiltonian in the original frame of reference. However, the

*y*-axes for these frames align at times

*t*=

*rT*. For polarization transfer between coupled spins (which are spin-locked to the

*y*-axis in the nth frame), we require that (

*a*

_{n}+

*b*

_{n})/2 is large enough to dominate the residual chemical shifts |ω

_{n}| ≤

*C*

_{n}. In other words, we require that the Hartmann-Hahn mixing condition is satisfied for the average Hamiltonian in the final frame, for all desired pairs of chemical shift offsets. Figure 5 compares (12) to the complete dynamics in the original frame of reference, and shows that cross-polarization can be quite accurately predicted by the average Hamiltonian in the final tilted, rotating frame.

### RF amplitude and pulse time

*f*

_{k}to at least halve the effective bandwidth, irrespective of the amplitude allowance |

*u*

_{k-1}|. To see this, observe that (8) implies

*C*

_{k+1}≤

*C*

_{k}/2. Therefore

*C*

_{k}≥ 2

^{n-k}

*C*

_{n}, so that the effective bandwidth

*C*

_{n}decays exponentially with the number of tilted, rotating frames. However, each frame change adds an extra modulation to (7), which increases the average amplitude of the RF pulse. The root-mean-square average amplitude

*A*of the RF pulse can be calculated from (7):

We find that with 3–5 changes of frame, (9) and (10) yield pulses with bandwidth-to-RF amplitude ratios (*C*_{0} / *A*) of 2 or higher. The *J*-coupling is largely maintained between any two spins sampled from the bandwidth. Pulse times *T* are on the order of milliseconds. Therefore, we can loop the pulse several times to get the appropriate mixing times for protein spectroscopy (order tens of milliseconds), cover the appropriate bandwidth (order kHz or tens of kHz), and obey average RF amplitude limits (order kHz).

Standard mixing pulses have bandwidth-to-RF amplitude ratios of about 2 (Glaser and Quant 1996). For the same average RF amplitude we can have a larger mixing bandwidth using a pulse designed using tilted, rotating frames. For example, Fig. 7 contains simulations and experiments that show larger bandwidth-to-RF amplitude ratios for a multi-frame mixing pulse than for a FLOPSY-16 sequence.

In practice, at typical RF power levels for carbon channel TOCSY experiments, the use of more than 5 rotating frames will produce a pulse time of tens of milliseconds. This means it is difficult to match the desired mixing time, i.e. the pulse may be shorter than the required mixing time, but when repeated twice it may be longer than the required mixing time. Furthermore, with more than 5 rotating frames (11) will tend to show a small effective coupling between widely separated chemical shifts. That is, with too many frames it is difficult to maintain the *J*-coupling between all possible spin pairs in the bandwidth.

### Multi-band mixing

When the chemical shift frequencies of interest fall into distinct, widely separated spectral regions we can save power by ignoring the empty parts of the spectrum and targeting the interesting frequency bands. For example, the carbon chemical shifts in protein samples fall into several distinct bands (Cavanagh et al. 2006), so it is sufficient to transfer polarization between and within these bands; there is no need to satisfy the Hartmann-Hahn mixing condition in the unpopulated spectral regions. Dual-band mixing pulses have previously been designed by adding an extra modulation to Gaussian inversion pulses (Carlomagno et al. 1996; Zuiderweg et al. 1996) or to the WALTZ-16 sequence (Grzesiek and Bax 1995), or in solid state NMR by adding an extra modulation to a spin-lock field (Zhang et al. 2012). In fact, (2) can also be used to effectively collapse and simplify a multi-band structure.

*f*

_{k}halfway between the midpoints of these bands, so that \(|\omega_{{\rm k}}| \in [a, b], \) where

*b*>

*a*> 0. For dual-band structures in the original frame (

*k*= 0), this means setting the carrier frequency for the pulse halfway between the bands. Next, set

*u*

_{k}= 0 and

*f*

_{k+1}= (

*a*+

*b*)/2. Applying (2)

*C*

_{k+1}= (

*b*−

*a*)/2. In the

*k*+ 1 frame, there is a single band centered around ω

_{k+1}= 0, with ω

_{k+1}≤

*C*

_{k+1}. If this band is wide then we can construct further tilted, rotating frames to reduce it as in Fig. 3. Alternatively, if this band contains more empty spectral regions, we can overlay two of these regions in the

*k*+ 2 frame, and so on. In this way, we can choose to have two active bands in the original frame, or four, or eight, and so on.

The bands can be moved arbitrarily far apart without using more RF amplitude or taking more time. To see this, observe that increasing *f*_{k+1} (to move the bands further apart) does not change the RF amplitude (13). The pulse time *T* depends on *f*_{n}*T* = 2π and flip angle α = *v*_{n}*T*. Neither of these constraints are changed by increasing *f*_{k+1} (for *k* + 1 ≠ *n*).

Figure 3 shows schematically how (2) can be used to collapse multi-band structures, so that in the final rotating frame the chemical shift bandwidth is small. Figure 8 presents a dual band pulse designed using four tilted, rotating frames, and Fig. 10 tests the same pulse on a protein sample.

## Materials and methods

### Synthesis of ^{13}C ^{15}N labeled HN-Pro-Ileu-Phe-His-Ala-Gly-CONH_{2}

The peptide was synthesized on a Focus XC peptide synthesizer (Aapptec Louisville KY). H-Gly-Cll (Trt) resin (0.1 mmol, Novabiochem) with a loading capacity of 0.64 mmol / g in a 25 mL reaction vessel was allowed to swell for 40 min with alternate mechanical stirring and nitrogen bubbling. Labeled Fmoc protected amino acids (0.5 mmol, Sigma Aldrich) was activated for 10 min with HOBT/HBTU/DIPEA in 1:1 NMP/DMF solution. The activated amino acid solution was added to the resin and allowed to mix in the reaction vessel with alternate mechanical stirring and nitrogen bubbling for 90 min. Coupling and deprotection was monitored using the Kaiser test. The peptide was cleaved from the resin with 2 % TFA in DCM for 60 min. The DCM was evaporated off with a stream of nitrogen gas. An oily, bright yellow compound remained. ACN : H_{2}O (1:1) was added to this and lyophilized which resulted in a colorless solid. The protecting groups on the peptide as removed with a 10 % TFA in DCM solution. The crude material was then purified by LC/MS (Agilent Technologies; Zorbax PrepHT 300SB-C18, 21.2 × 150 mm, 5 uM and Zorbax 300SB-C18, 2.12 × 150 mm, 5 μM), which resulted in a colorless fluffy powder in 28 % overall yield. Note that the terminal Glycine is not ^{13}C ^{15}N labeled. For NMR experiments the peptide was at a concentration of 5mM in dmso-d6.

### Recombinant expression and purification protein samples

Human carbonic anhydrase II (HCA II) was recombinantly expressed in *E. coli* and purified (Burton et al. 2000). A uniformly ^{13}C and ^{15}N perdeuterated sample of HCA II at a concentration of 1 mM (pH 7.4, 10 mM phosphate buffer) was used to generate Fig. 9.

A uniformly ^{13}C, ^{15}N, and ^{2}H perdeuterated sample of B-cell lymphoma-extra large (BCL-X_{L}) was recombinantly expressed and purified (Malia and Wagner 2007). The sample was used at a concentration of 1.02 mM. Figure 10 was produced using this sample.

### TOCSY experiments

The data were collected on a 500 MHz Bruker spectrometer equipped with a cryogenic TXO probe. We performed carbon-carbon TOCSY experiments in the presence of proton and nitrogen decoupling during mixing and detection of the direct dimension, with a multi-frame pulse deployed for the homonuclear cross-polarization stage of the experiment. The shaped amplitude and phase profiles of the mixing pulse were finely discretized due to spectrometer software requirements. The experiments with the peptide PIFHA were done at 298 K, the experiment on the HCA protein was done at 310 K, and the experiment on the BCL-X_{L} protein was done at 303 K.

## Experimental results

We present experimental tests of three pulses designed by the multi-rotating frame method.

*f*

_{1}/(2π) = 3.840 kHz,

*f*

_{2}/(2π) = 1.097 kHz, and

*f*

_{3}/(2π) = 0.549 kHz. The pulse amplitudes are

*u*

_{0}/(2π) = 3.026 kHz,

*u*

_{1}/(2π) = 0.946 kHz,

*u*

_{2}/(2π) = 0.538 kHz, and

*v*

_{3}/(2π) = 0.137 kHz. The mixing time must be an integer multiple of

*T*= 2π/

*f*

_{3}= 1.823 ms for frame alignment. Note that for the case of three rotating frames (7) is explicitly

*y*-axis for \(t \in [0, T]. \) The

*x*-component,

*u*

_{0}, is time-invariant. This pulse was simulated for effective spin locking (Fig. 4) and in-phase magnetization transfer (Fig. 5). The average RF amplitude is 3.5 kHz and the mixing bandwidth is approximately 6.5 kHz. Figure 6 shows the performance of this pulse in a TOCSY experiment of the synthetic peptide. The mixing time is 16

*T*≈ 29 ms. All cross peaks are clearly resolved. Figure 9 shows the same pulse applied to a protein sample.

*f*

_{1}/(2π) = 2.943 kHz,

*f*

_{2}/(2π) = 1.261 kHz, and

*f*

_{3}/(2π) = 0.420 kHz. The mixing time must be an integer multiple of

*T*= 2π/

*f*

_{3}= 2.379 ms. The pulse amplitudes are

*u*

_{0}/(2π) = 1.956 kHz,

*u*

_{1}/(2π) = 1.038 kHz,

*u*

_{2}/(2π) = 0.391 kHz, and

*v*

_{3}/(2π) = 0.158 kHz.

^{α}and carbonyl spins. The modulation frequencies are

*f*

_{1}/(2π) = 8.547 kHz,

*f*

_{2}/(2π) = 2.849 kHz,

*f*

_{3}/(2π) = 1.425 kHz, and

*f*

_{4}/(2π) = 0.356. The mixing time must be an integer multiple of

*T*= 2.808 ms. We set

*u*

_{0}= 0 to bring about the dual-band structure, as explained in the previous section. The other pulse amplitudes are

*u*

_{1}/(2π) = 1.817 kHz,

*u*

_{2}/(2π) = 1.2557 kHz,

*u*

_{3}/(2π) = 0.3365 kHz and

*v*

_{4}/(2π) = 0.1246 kHz. The root-mean-square RF amplitude is 3.75 kHz. Figure 8 shows a TOCSY experiment using this pulse with mixing time 20

*T*≈ 56 ms. We see well-resolved cross peaks between the aliphatic and carbonyl regions. The aromatics (125–140 ppm) are not in the active bands for this pulse, so they do not mix with the other spins. Figure 10 shows the same pulse applied to a protein sample.

Finally, note that these pulses can be scaled to other chemical shift bandwidths (including other field strengths). The bandwidth, amplitudes {*u*_{k}} and modulation frequencies {*f*_{k}} are all scaled by the same constant, and the pulse time *T* is scaled by the inverse of that constant. At the new power level, the pulse can be repeated any number of times to achieve the desired mixing time. Therefore, the trade-offs amongst mixing bandwidth, mixing time, and RF power can be negotiated by the spectroscopist for each application.

## Conclusion

Our pulse design method provides an analytical solution to the problem of large bandwidths in correlation NMR, relying on familiar kinds of Hamiltonian transforms (tilted axes, rotating frames, and rotating wave approximations), and does not require numerical searches/optimizations. Equation (2) allows chemical shift bandwidths to be precisely manipulated in a variety of ways, which we have explored here. With some care, a pulse can be engineered so that the coupling tensor dominates the effective Hamiltonian—a highly desirable situation in HOHAHA mixing experiments. These mixing pulses have been successfully applied in carbon-carbon TOCSY experiments over large bandwidths and at low RF power.

Future work includes considering the effects of relaxation, exploring the utility of these pulses in high field spectroscopy, and resolving weak (i.e. 2–5 Hz) *J*-couplings present in protein samples.

## Acknowledgments

This work is funded by Agilent Foundation, NIH grants GM047467, GM075879 and P41-EB002026. T.Y.Y. thanks the National Science Council in Taiwan (NSC98-2917-I-564-157) for partial financial support. H.A. thanks NIH grant NIDDK-K01-DK085198 for financial support.