Journal of Biomolecular NMR

, Volume 47, Issue 3, pp 171–181

HA-detected experiments for the backbone assignment of intrinsically disordered proteins

  • Sampo Mäntylahti
  • Olli Aitio
  • Maarit Hellman
  • Perttu Permi
Article

DOI: 10.1007/s10858-010-9421-0

Cite this article as:
Mäntylahti, S., Aitio, O., Hellman, M. et al. J Biomol NMR (2010) 47: 171. doi:10.1007/s10858-010-9421-0
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Abstract

We propose a new alpha proton detection based approach for the sequential assignment of natively unfolded proteins. The proposed protocol superimposes on following features: HA-detection (1) enables assignment of natively unfolded proteins at any pH, i.e., it is not sensitive to rapid chemical exchange undergoing in natively unfolded proteins even at moderately high pH. (2) It allows straightforward assignment of proline-rich polypeptides without additional proline-customized experiments. (3) It offers more streamlined and less ambiguous assignment based on solely intraresidual 15N(i)-13C′(i)-Hα(i) (or 15N(i)-13Cα(i)-Hα(i)) and sequential 15N(i + 1)-13C′(i)-Hα(i) (or 15N(i + 1)-13Cα(i)-Hα(i)) correlation experiments together with efficient use of chemical shifts of 15N and 13C′ nuclei, which show smaller dependence on residue type. We have tested the proposed protocol on two proteins, small globular 56-residue GB1, and highly disordered, proline-rich 47-residue fifth repeat of EspFU. Using the proposed approach, we were able to assign 90% of 1Hα, 13Cα, 13C′, 15N chemical shifts in EspFU. We reckon that the HA-detection based strategy will be very useful in the assignment of natively unfolded proline-rich proteins or polypeptide chains.

Keywords

AssignmentEspFUH(CA)CONiH(CA)NCOIntrinsically unfolded proteins

Supplementary material

10858_2010_9421_MOESM1_ESM.docx (15 kb)
Supplementary material 1 (DOCX 14 kb)
10858_2010_9421_MOESM2_ESM.tif (21.7 mb)
Supplementary material 2 (TIFF 22173 kb)

Copyright information

© Springer Science+Business Media B.V. 2010

Authors and Affiliations

  • Sampo Mäntylahti
    • 1
  • Olli Aitio
    • 1
  • Maarit Hellman
    • 1
  • Perttu Permi
    • 1
  1. 1.Program in Structural Biology and Biophysics, Institute of Biotechnology/NMR LaboratoryUniversity of HelsinkiHelsinkiFinland