Special Issue: Yvonne Martin Retirement

Journal of Computer-Aided Molecular Design

, Volume 21, Issue 1, pp 63-86

First online:

Outliers in SAR and QSAR: Is unusual binding mode a possible source of outliers?

  • Ki Hwan KimAffiliated withHope Drug Discovery Research Laboratory Email author 

Rent the article at a discount

Rent now

* Final gross prices may vary according to local VAT.

Get Access

Abstract

A lead optimization is usually carried out by structure-activity relationship (SAR) and/or quantitative structure-activity relationship (QSAR) studies. One of the assumptions in SAR and QSAR studies is that similar analogs bind to the same binding site in a similar binding mode. One often observes that there are outliers, especially in QSAR. However, most QSAR studies are carried out focusing their attention to the development of QSAR and leave the outliers without much attention. We searched a number of ligand-bound X-ray crystal structures from the protein structure database to find evidences that could indicate a possible source of outliers in SAR or QSAR. Our results show that unusual binding mode could be a source of outliers.

Keywords

SAR QSAR Outlier Binding mode X-ray structures Source of outliers