Hydrobiologia

, Volume 683, Issue 1, pp 25–34

A community-based framework for aquatic ecosystem models

  • Dennis Trolle
  • David P. Hamilton
  • Matthew R. Hipsey
  • Karsten Bolding
  • Jorn Bruggeman
  • Wolf M. Mooij
  • Jan H. Janse
  • Anders Nielsen
  • Erik Jeppesen
  • J. Alex Elliott
  • Vardit Makler-Pick
  • Thomas Petzoldt
  • Karsten Rinke
  • Mogens R. Flindt
  • George B. Arhonditsis
  • Gideon Gal
  • Rikke Bjerring
  • Koji Tominaga
  • Jochem’t Hoen
  • Andrea S. Downing
  • David M. Marques
  • Carlos R. FragosoJr.
  • Martin Søndergaard
  • Paul C. Hanson
Opinion Paper

DOI: 10.1007/s10750-011-0957-0

Cite this article as:
Trolle, D., Hamilton, D.P., Hipsey, M.R. et al. Hydrobiologia (2012) 683: 25. doi:10.1007/s10750-011-0957-0

Abstract

Here, we communicate a point of departure in the development of aquatic ecosystem models, namely a new community-based framework, which supports an enhanced and transparent union between the collective expertise that exists in the communities of traditional ecologists and model developers. Through a literature survey, we document the growing importance of numerical aquatic ecosystem models while also noting the difficulties, up until now, of the aquatic scientific community to make significant advances in these models during the past two decades. Through a common forum for aquatic ecosystem modellers we aim to (i) advance collaboration within the aquatic ecosystem modelling community, (ii) enable increased use of models for research, policy and ecosystem-based management, (iii) facilitate a collective framework using common (standardised) code to ensure that model development is incremental, (iv) increase the transparency of model structure, assumptions and techniques, (v) achieve a greater understanding of aquatic ecosystem functioning, (vi) increase the reliability of predictions by aquatic ecosystem models, (vii) stimulate model inter-comparisons including differing model approaches, and (viii) avoid ‘re-inventing the wheel’, thus accelerating improvements to aquatic ecosystem models. We intend to achieve this as a community that fosters interactions amongst ecologists and model developers. Further, we outline scientific topics recently articulated by the scientific community, which lend themselves well to being addressed by integrative modelling approaches and serve to motivate the progress and implementation of an open source model framework.

Keywords

Ecological modellingOpen sourceModel development

Copyright information

© Springer Science+Business Media B.V. 2011

Authors and Affiliations

  • Dennis Trolle
    • 1
  • David P. Hamilton
    • 2
  • Matthew R. Hipsey
    • 3
  • Karsten Bolding
    • 1
    • 4
  • Jorn Bruggeman
    • 4
    • 5
  • Wolf M. Mooij
    • 6
  • Jan H. Janse
    • 7
  • Anders Nielsen
    • 1
    • 8
  • Erik Jeppesen
    • 1
    • 9
  • J. Alex Elliott
    • 10
  • Vardit Makler-Pick
    • 11
  • Thomas Petzoldt
    • 12
  • Karsten Rinke
    • 13
  • Mogens R. Flindt
    • 14
  • George B. Arhonditsis
    • 15
  • Gideon Gal
    • 16
  • Rikke Bjerring
    • 1
  • Koji Tominaga
    • 17
    • 18
  • Jochem’t Hoen
    • 19
  • Andrea S. Downing
    • 19
  • David M. Marques
    • 20
  • Carlos R. FragosoJr.
    • 21
  • Martin Søndergaard
    • 1
  • Paul C. Hanson
    • 22
  1. 1.Department of BioscienceAarhus UniversitySilkeborgDenmark
  2. 2.Centre for Biodiversity and Ecology ResearchUniversity of WaikatoHamiltonNew Zealand
  3. 3.School of Earth and EnvironmentUniversity of Western AustraliaCrawleyAustralia
  4. 4.Bolding & Burchard ApSAsperupDenmark
  5. 5.Department of Earth SciencesUniversity of OxfordOxfordUK
  6. 6.Department of Aquatic EcologyNetherlands Institute of Ecology (NIOO-KNAW)WageningenThe Netherlands
  7. 7.Netherlands Environmental Assessment Agency (PBL)BilthovenThe Netherlands
  8. 8.Department of AgroecologyAarhus University, Research Centre FoulumTjeleDenmark
  9. 9.SINO-DANISH Research CentreBeijingChina
  10. 10.Algal Modelling Unit, Lake Ecosystem GroupCentre for Ecology and Hydrology LancasterBailriggUK
  11. 11.Oranim Academic College of EducationKiryat TivonIsrael
  12. 12.Faculty of Forest, Geo and Hydro Sciences, Institute of HydrobiologyTechnische Universitaet DresdenDresdenGermany
  13. 13.Department of Lake ResearchHelmholtz Centre for Environmental Research-UFZMagdeburgGermany
  14. 14.Institute of BiologyUniversity of Southern DenmarkOdense MDenmark
  15. 15.Ecological Modeling Laboratory, Department of Physical & Environmental SciencesUniversity of TorontoTorontoCanada
  16. 16.Kinneret Limnological LaboratoryIOLRMigdalIsrael
  17. 17.Department of BiologyUniversity of OsloOsloNorway
  18. 18.Norwegian Institute for Water ResearchOsloNorway
  19. 19.Aquatic Ecology and Water Quality Management Group, Department of Environmental SciencesWageningen UniversityWageningenThe Netherlands
  20. 20.Instituto de Pesquisas Hidráulicas (IPH)Universidade Federal do Rio Grande do Sul (UFRGS)Porto AlegreBrazil
  21. 21.Centre for TechnologyFederal University of AlagoasMaceióBrazil
  22. 22.Center for LimnologyUniversity of WisconsinMadisonUSA