Breast Cancer Research and Treatment

, Volume 128, Issue 1, pp 267–272

Replication of genome-wide discovered breast cancer risk loci in the Cypriot population

  • Maria A. Loizidou
  • Andreas Hadjisavvas
  • John P. A. Ioannidis
  • Kyriacos Kyriacou

DOI: 10.1007/s10549-010-1319-8

Cite this article as:
Loizidou, M.A., Hadjisavvas, A., Ioannidis, J.P.A. et al. Breast Cancer Res Treat (2011) 128: 267. doi:10.1007/s10549-010-1319-8


Genome-wide association studies (GWAS) have identified associations with robust statistical support for influencing breast cancer susceptibility. Most GWAS and replications have been conducted in Northern European populations and to a lesser extent in Asians, and Ashkenazi Jews. It is important to evaluate whether these variants confer risk across different populations and also to assess the magnitude of risk conferred. The aim of this study was to evaluate previously GWAS-identified breast cancer risk variants in the Cypriot population. Eleven GWAS-discovered single nucleotide polymorphisms (SNPs) were analyzed for association with breast cancer in 1,109 Cypriot female breast cancer patients and 1,177 healthy female controls. Four of the 11 SNPs evaluated were found to be nominally significantly associated (P < 0.05) with breast cancer risk in the Cypriot population. Based on estimated power, five associations would be expected to be nominally significant. The correlation coefficient of effect sizes (per-allele odds ratio) between the Cypriot population and the original GWAS populations where these SNPs had been discovered was 0.58 (P = 0.064), while allele frequencies were very similar (r = 0.88, P < 0.001). Overall, we show modest concordance for breast cancer GWAS-discovered alleles and their effect sizes in the Cypriot population. The effects sizes of GWAS-discovered SNPs need to be verified separately in different populations.


Breast cancerCyprusGWAS replicationSNP

Supplementary material

10549_2010_1319_MOESM1_ESM.doc (102 kb)
Supplementary material 1 (DOC 101 kb)

Copyright information

© Springer Science+Business Media, LLC. 2011

Authors and Affiliations

  • Maria A. Loizidou
    • 1
  • Andreas Hadjisavvas
    • 1
    • 2
  • John P. A. Ioannidis
    • 3
    • 4
    • 5
  • Kyriacos Kyriacou
    • 1
  1. 1.Department of Electron Microscope / Molecular PathologyThe Cyprus Institute of Neurology and GeneticsNicosiaCyprus
  2. 2.Brunel Institute for Cancer Genetics and PharmacogenomicsBrunel UniversityUxbridgeUK
  3. 3.Department of Hygiene and EpidemiologyUniversity of Ioannina School of Medicine and Biomedical Research Institute, Foundation for Research and Technology-HellasIoanninaGreece
  4. 4.Center for Genetic Epidemiology and ModellingTufts University School of MedicineBostonUSA
  5. 5.Department of EpidemiologyHarvard School of Public HealthBostonUSA