Skip to main content
Log in

Gracilibacillus xinjiangensis sp. nov., a new member of the genus Gracilibacillus isolated from Xinjiang region, China

  • Original Paper
  • Published:
Antonie van Leeuwenhoek Aims and scope Submit manuscript

Abstract

A Gram-positive, endospore-forming, rod-shaped bacterium, designated isolate J2T was isolated from a soil sample from Xinjiang Uyghur Autonomous Region, China. The isolate was observed to grow at 16–46 °C and pH 6.5–8.0. Chemotaxonomic analysis showed menaquinone-7 (MK-7) to be the major isoprenoid quinone; diphosphatidylglycerol, phosphatidylglycerol, one aminophospholipid, two phosphoglycolipids and one glycolipid as the major cellular polar lipids; and anteiso-C15:0, iso-C15:0, anteiso-C17:0 and C16:0 as the major fatty acids. Comparative analyses of the 16S rRNA gene sequence showed that strain J2T is most closely related to Gracilibacillus ureilyticus (with 98.8 % similarity), Gracilibacillus dipsosauri (97.2 %), Gracilibacillus quinghaiensis (97.1 %) and Gracilibacillus thailandensis (97.0 %). The DNA–DNA reassociation values between strain J2T and G. ureilyticus MF38T, G. dipsosauri DD1T, G. quinghaiensis YIM-C229T and G. thailandensis TP2-8T were 29.8 ± 3.7, 23.0 ± 3.5, 15.8 ± 4.9 and 15.9 ± 5.0 %, respectively. The genomic DNA G+C content of strain J2T was determined to be 36.5 mol%. Based on these data, strain J2T is considered as a novel species of the genus Gracilibacillus, for which the name Gracilibacillus xinjiangensis sp. nov. is proposed. The type species is J2T (= CGMCC 1.12449T = JCM 18859T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1

Similar content being viewed by others

References

  • Ahmed I, Yokota A, Fujiwara T (2007) Gracilibacillus boraciitolerans sp. nov., a highly boron-tolerant and moderately halotolerant bacterium isolated from soil. Int J Syst Evol Microbiol 57:796–802

    Article  PubMed  CAS  Google Scholar 

  • Barrow GH, Feltham RKA (1993) Cowan and Steel’s manual for identification of medical bacteria, 3rd edn. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Carrasco IJ, Marquez MC, Yanfen X, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A (2006) Gracilibacillus orientalis sp. nov., a novel moderately halophilic bacterium isolated from a salt lake in Inner Mongolia. China Int J Syst Evol Microbiol 56:599–604

    Article  CAS  Google Scholar 

  • Chamroensaksri N, Tanasupawat S, Akaracharanya A, Visessanguan W, Kudo T, Itoh T (2010) Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra). Int J Syst Evol Microbiol 60:944–948

    Article  PubMed  Google Scholar 

  • Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Xu LH, Peng Q, Wen ML, Jiang CL (2008a) Gracilibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from saline soil. Int J Syst Evol Microbiol 58:2403–2408

    Article  PubMed  CAS  Google Scholar 

  • Chen YG, Cui XL, Zhang YQ, Li WJ, Wang YX, Xu LH, Peng Q, Wen ML, Jiang CL (2008b) Gracilibacillus quinghaiensis sp. nov., isolated from salt-lake sediment in the Qaidam Basin, north-west China. Syst Appl Microbiol 31:183–189

    Article  PubMed  CAS  Google Scholar 

  • Chen CX, Wang J, Guo H, Hou WY, Yang N, Ren B, Liu M, Dai H, Liu XT, Song FH, Zhang LX (2013) Three antimycobacterial metabolites identified from a marine-derived Streptomyces sp. MS100061. Appl Microbiol Biotechnol 97:3885–3892

    Article  PubMed  CAS  Google Scholar 

  • De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142

    Article  PubMed  Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  Google Scholar 

  • Gao M, Liu ZZ, Zhou YG, Liu HC, Wang L, Chen SF, Ji XC (2012) Gracilibacillus kekensis sp. nov., a moderate halophile isolated from Keke Salt Lake. Int J Syst Evol Microbiol 62:1032–1036

    Article  PubMed  CAS  Google Scholar 

  • Huo YY, Xu XW, Cui HL, Wu M (2010) Gracilibacillus ureilyticus sp. nov., a halotolerant bacterium from a saline-alkaline soil. Int J Syst Evol Microbiol 60:1383–1386

    Article  PubMed  CAS  Google Scholar 

  • Jeon CO, Lim JM, Jang HH, Park DJ, Xu LH, Jiang CL, Kim CJ (2008) Gracilibacillus lacisalsi sp. nov., a halophilic Gram-positive bacterium from a salt lake in China. Int J Syst Evol Microbiol 58:2282–2286

    Article  PubMed  CAS  Google Scholar 

  • Kim SB, Falconer C, Williams E, Goodfellow M (1998) Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48:59–68

    Article  PubMed  Google Scholar 

  • Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012a) Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721

    Article  PubMed  CAS  Google Scholar 

  • Kim P, Lee JC, Park DJ, Shin KS, Kim JY, Kim CJ (2012b) Gracilibacillus bigeumensis sp. nov., a moderately halophilic bacterium from solar saltern soil. Int J Syst Evol Microbiol 62:1857–1863

    Article  PubMed  CAS  Google Scholar 

  • Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

    Article  PubMed  CAS  Google Scholar 

  • Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Komagata K, Suzuki K (1987) Lipid and cell-wall analysis in bacterial systematics. Method Microbiol 19:161–207

    Article  CAS  Google Scholar 

  • Lawson PA, Deutch CE, Collins MD (1996) Phylogenetic characterization of a novel salt-tolerant Bacillus species: description of Bacillus dipsosauri sp. nov. J Appl Bacteriol 81:109–112

    Article  PubMed  CAS  Google Scholar 

  • Liu XT, Chen CX, He WN, Huang P, Liu MM, Wang Q, Guo H, Bolla K, Lu Y, Song FH, Dai HQ, Liu M, Zhang LX (2012) Exploring anti-TB leads from natural products library originated from marine microbes and medicinal plants. Antonie Van Leeuwenhoek 102:447–461

    Article  PubMed  CAS  Google Scholar 

  • Mandel M, Marmur J (1968) Use of ultraviolet absorbance temperature profiles for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B:195–206

    Article  Google Scholar 

  • Mao J, Wang J, Dai HQ, Zhang ZD, Tang QY, Ren B, Yang N, Goodfellow M, Zhang LX, Liu ZH (2011) Yuhushiella deserti gen. nov., sp. nov., a new member of the suborder Pseudonocardineae. Int J Syst Evol Microbiol 61:621–630

    Article  PubMed  CAS  Google Scholar 

  • Marmur J (1961) A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218

    Article  CAS  Google Scholar 

  • Ren B, Yang N, Wang J, Ma XL, Wang Q, Xie F, Guo H, Liu ZH, Pugin B, Zhang LX (2013) Amphibacillus marinus sp. nov., a new member of the genus Amphibacillus isolated from the South China Sea. Int J Syst Evol Microbiol 63:1485–1491

    Article  PubMed  CAS  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    PubMed  CAS  Google Scholar 

  • Simmons JS (1926) A culture medium for differentating organisms of typhoid-colon aerogenes groups and for isolation of certain fungi. J Infect Dis 39:209

    Article  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739

    Article  PubMed  CAS  Google Scholar 

  • Tang SK, Wang Y, Lou K, Mao PH, Jin X, Xu LH, Li WJ (2009) Gracilibacillus saliphilus sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol 59:1620–1624

    Article  PubMed  CAS  Google Scholar 

  • Tang QY, Yang N, Wang J, Xie YQ, Ren B, Zhou YG, Gu MY, Mao J, Li WJ, Shi YH, Zhang LX (2011) Paenibacillus algorifonticola sp. nov., isolated from a cold spring. Int J Syst Evol Microbiol 61:2167–2172

    Article  PubMed  CAS  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  PubMed  CAS  Google Scholar 

  • Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128:1959–1968

    Google Scholar 

  • Wainø M, Tindall BJ, Schumann P, Ingvorsen K (1999) Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49(Pt 2):821–831

    Article  PubMed  Google Scholar 

  • Wang Q, Song FH, Xiao X, Li L, Aaron M, Wael MAM, Wang J, Guo H, He WN, Xie F, Dai HQ, Liu MM, Chen CX, Xu H, Liu M, Andrew MP, Liu XT, Robert JC, Zhang LX (2013) Abyssomicins from a South China Sea deep-sea sediment Verrucosispora sp: natural thioether Michael addition adducts as potential antitubercular prodrugs. Angew Chem Int Ed 52:1231–1234

    Article  CAS  Google Scholar 

  • Wayne LG, Brenner DJ, Colwell RR, Grimont PA, Kandler O, Krichevsky MI, Moore WEC, Murray RGE (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464

    Article  Google Scholar 

  • Xin H, Itoh T, Zhou P, Suzuki K, Nakase T (2001) Natronobacterium nitratireducens sp. nov., a haloalkaliphilic archaeon isolated from a soda lake in China. Int J Syst Evol Microbiol 51:1825–1829

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

The authors are very grateful for the technical support provided by Yuqin Zhang, Jingnan Liang, Hongcan Liu. This work was supported in part by grants from the Ministry of Science and Technology of China (2013CB734000, 2012CB725200, 2012CB721006, 2011ZX11102-011-11), National Natural Science Foundation of China (31100075, 812111049, 31170095, 31000004) and the CAS Pillar Program (XDA04074000) and. L. Z. is an Awardee for National Distinguished Young Scholar Program in China.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Fuhang Song or Lixin Zhang.

Additional information

The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain J2T is JQ911669.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material (DOCX 421 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Yang, N., Ren, B., Dai, H. et al. Gracilibacillus xinjiangensis sp. nov., a new member of the genus Gracilibacillus isolated from Xinjiang region, China. Antonie van Leeuwenhoek 104, 809–816 (2013). https://doi.org/10.1007/s10482-013-9992-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10482-013-9992-3

Keywords

Navigation