Antonie van Leeuwenhoek

, Volume 98, Issue 4, pp 519–529

Evaluation of fungal and yeast diversity in Slovakian wine-related microbial communities

  • Barbara Brežná
  • Katarína Ženišová
  • Katarína Chovanová
  • Viera Chebeňová
  • Lucia Kraková
  • Tomáš Kuchta
  • Domenico Pangallo
Original Paper

DOI: 10.1007/s10482-010-9469-6

Cite this article as:
Brežná, B., Ženišová, K., Chovanová, K. et al. Antonie van Leeuwenhoek (2010) 98: 519. doi:10.1007/s10482-010-9469-6

Abstract

Since the yeast flora of Slovakian enology has not previously been investigated by culture-independent methods, this approach was applied to two most common cultivars Frankovka (red wine) and Veltlin (white wine), and complemented by cultivation. Model samples included grapes, initial must, middle fermenting must and must in the end-fermentation phase. The cultured isolates were characterized by length polymorphism of rDNA spacer two region using fluorescence PCR and capillary electrophoresis (f-ITS PCR), and some were identified by sequencing. The microbial DNA extracted directly from the samples without cultivation was analysed by f-ITS PCR, amplicons were cloned and sequenced. The use of universal fungal primers led to detection of both yeasts and filamentous fungi. The amplicon of highest intensity and present in all the samples corresponded to Hanseniaspora uvarum. Other species demonstrated by both approaches included Saccharomyces sp., Metschnikowia pulcherrima or M. chrysoperlae, Candida zemplinina, Cladosporium cladosporioides, Botryotinia fuckeliana, Pichia anomala, Candida railenensis, Cryptococcus magnus, Metschnikowia viticola or Candida kofuensis, Pichia kluyveri or Pichia fermentas, Pichia membranifaciens, Aureobasidium pullulans, Alternaria alternata, Erysiphe necator, Rhodotorula glutinis, Issatchenkia terricola and Debaryomyces hansenii. Endemism of Slovakian enological yeasts was suggested on the level of minor genetic variations of the known species and probably not accounting for novel species. The prevalence of H. uvarum over Saccharomyces sp. in the samples was indicated. This is the first culture-independent study of Slovakian enology and the first time f-ITS PCR profiling was used on wine-related microbial communities.

Keywords

WineYeastsFungiDiversityFluorescence-ITS PCRAnalysis strategy

Copyright information

© Springer Science+Business Media B.V. 2010

Authors and Affiliations

  • Barbara Brežná
    • 1
  • Katarína Ženišová
    • 1
  • Katarína Chovanová
    • 2
  • Viera Chebeňová
    • 1
  • Lucia Kraková
    • 2
  • Tomáš Kuchta
    • 1
  • Domenico Pangallo
    • 2
    • 3
  1. 1.Food Research InstituteBratislavaSlovak Republic
  2. 2.Institute of Molecular BiologySlovak Academy of SciencesBratislavaSlovak Republic
  3. 3.Caravella s.r.oBratislavaSlovak Republic