Antonie van Leeuwenhoek

, Volume 90, Issue 2, pp 159–169

Culturable Actinobacteria from the Marine Sponge Hymeniacidon perleve: Isolation and Phylogenetic Diversity by 16S rRNA gene-RFLP Analysis

Original paper

DOI: 10.1007/s10482-006-9070-1

Cite this article as:
Zhang, H., Lee, Y., Zhang, W. et al. Antonie Van Leeuwenhoek (2006) 90: 159. doi:10.1007/s10482-006-9070-1

Abstract

A total of 106 actinobacteria associated with the marine sponge Hymeniacidon perleve collected from the Yellow Sea, China were isolated using eight different media. The number of species and genera of actinobacteria recovered from the different media varied significantly, underlining the importance of optimizing the isolation conditions. The phylogenetic diversity of the actinobacteria isolates was assessed using 16S rRNA gene amplification–restriction fragment length polymorphism (RFLP) analysis of the 106 strains with different morphologies. The RFLP fingerprinting of selected strains by HhaI-digestion of the 16S rRNA genes resulted in 11 different patterns. The HhaI-RFLP analysis gave good resolution for the identification of the actinobacteria isolates at the genus level. A phylogenetic analysis using 16S rRNA gene sequences revealed that the isolates belonged to seven genera of culturable actinobacteria including Actinoalloteichus, Micromonospora, Nocardia, Nocardiopsis, Pseudonocardia, Rhodococcus, and Streptomyces. The dominant genus was Streptomyces, which represented 74% of the isolates. Three of the strains identified are candidates for new species.

Keywords

Marine spongeActinobacteriaRFLPStreptomycetesNocardiopsisPseudonocardiaNocardiaMicromonosporaRhodococcusActinoalloteichus

Copyright information

© Springer Science+Business Media, B.V. 2006

Authors and Affiliations

  1. 1.Marine Bioproducts Engineering Group, Dalian Institute of Chemical PhysicsChinese Academy of SciencesDalianChina
  2. 2.Polar BioCenter Korea Polar Research Institute (KOPRI)KORDISeoulKorea
  3. 3.Graduate School of the Chinese Academy of SciencesChinese Academy of SciencesBeijingChina