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Genetic population structure and morphological characters of Japanese psychrolutids of genus Malacocottus (Scorpaeniformes: Psychrolutidae)

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Abstract

The genetic population structure and the diagnostic characters of Malacocottus gibber from the Japan Sea and Malacocottus zonurus from the Okhotsk Sea and the northwestern Pacific were compared. Analysis of the nucleotide sequences of the mitochondrial control region revealed no genetic differences between the populations of M. gibber and M. zonurus, even though most individuals of both the species were found to be morphologically distinct. Most of the Malacocottus gibber specimens had the typical morphological characters of this species, namely the absence of an accessory spine on the preopercle of both sides and the absence of modified body scales above the lateral line. All the specimens of M. zonurus had accessory spines on both sides, and most of them had modified body scales. The results of this study suggest that M. gibber should be treated as a subspecies or a synonym of M. zonurus. The nested clade analysis and the analysis of molecular variance (AMOVA) showed that the Japanese Malacocottus fishes are genetically homogenous over their geographical range. The mismatch distribution of the Japanese Malacocottus fishes indicated that a sudden population expansion had occurred recently. The contrast in phylogeographic structures between the Malacocottus fish and the zoarcid Bothrocara hollandi—the most dominant deep-sea demersal fish in the Japan Sea—might be attributed to the differences in the depths of the habitats and larval ecology between these two fishes.

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References

  • Bean TH (1890) New fishes collected off the coast of Alaska and the adjacent region southward. Proc US Natl Mus 13:37–45

    Google Scholar 

  • Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9:1657–1659

    Article  CAS  PubMed  Google Scholar 

  • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479–491

    CAS  PubMed  Google Scholar 

  • Itaki T, Ikehara K, Motoyama I, Hasegawa S (2004) Abrupt ventilation changes in the Japan Sea over the last 30 ky: evidence from deep-dwelling radiolarians. Palaeogeogr Palaeoclimatol Palaeoecol 208:263–278

    Article  Google Scholar 

  • Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ (1998) Multiple sequence alignment with Clustal X. Trends Biochem Sci 23:403–405

    Article  CAS  PubMed  Google Scholar 

  • Kodama Y, Yanagimoto T, Shinohara G, Hayashi I, Kojima S (2008) Deviation age of a deep-sea demersal fish, Bothrocara hollandi, between the Japan Sea and the Okhotsk Sea. Mol Phylogenet Evol 49:682–687

    Article  PubMed  Google Scholar 

  • Kojima S, Segawa R, Hayashi I, Okiyama M (2001) Phylogeography of a deep-sea demersal fish, Bothrocara hollandi, in the Japan Sea. Mar Ecol Prog Ser 217:135–143

    Article  Google Scholar 

  • Miya M, Nishida M (2000) Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion. Mol Phylogenet Evol 17:437–455

    Article  CAS  PubMed  Google Scholar 

  • Mukai T, Naruse K, Sato T, Shima A, Morisawa M (1997) Multiregional introgressions inferred from the mitochondrial DNA phylogeny of a hybridizing species complex of gobiid fishes, genus Tridentiger. Mol Biol Evol 14:1258–1265

    CAS  PubMed  Google Scholar 

  • Nakabo T (2002) Psychrolutidae. In: Nakabo T (ed) Fishes of Japan with pictorial keys to the species. Tokai University Press, Tokyo, pp 651–653, 1528–1529

    Google Scholar 

  • Nishimura S (1983) Okhotsk Sea, Japan Sea, East China Sea. In: Ketchum BK (ed) Ecosystems of the world, vol 26, estuarine and enclosed seas. Elsevier, Amsterdam, pp 375–401

    Google Scholar 

  • Oba T, Kato M, Kitazato H, Koizumi I, Omura A, Sakai T, Takayama T (1991) Paleoenvironmental changes in the Japan Sea during the last 85,000 years. Paleoceanography 6:499–518

    Article  Google Scholar 

  • Okiyama M (1988) An atlas of the early stage of fishes in Japan. Tokai University Press, Tokyo

    Google Scholar 

  • Okiyama M (2004) Deepest demersal fish community in the Sea of Japan: a review. Contrib Biol Lab Kyoto Univ 29:409–429

    Google Scholar 

  • Palumbi S, Martin A, Romano S, McMillan WO, Stice L, Grabowski G (1991) The simple fool’s guide to PCR. Ver 2. Department of Zoology and Kewalo Marine Laboratory, University of Hawaii, Honolulu

    Google Scholar 

  • Pfenninger M, Posada D (2002) Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): fragmentation, corridor migration, and secondary contact. Evolution 56:1776–1788

    PubMed  Google Scholar 

  • Posada D, Crandall KA, Templeton AR (2000) GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol Ecol 9:487–488

    Article  CAS  PubMed  Google Scholar 

  • Raymond M, Rousset F (1995) An exact test for population differentiation. Evolution 49:1280–1283

    Article  Google Scholar 

  • Rogers AR (1995) Genetic evidence for a Pleistocene population explosion. Evolution 49:608–615

    Article  Google Scholar 

  • Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552–569

    CAS  PubMed  Google Scholar 

  • Sakai K, Yamamoto K, Tokutake K, Okamoto T, Matsunuma H (1991) Sea fishes collected from the coast of Ishikawa Prefecture, the Sea of Japan. J Jpn Assoc Zool Aqua 36:10–19

    Google Scholar 

  • Sakamoto K (1930) Two new species of fishes from the Japan Sea. J Imp Fish Inst 26:15–19

    Google Scholar 

  • Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN: a software for population genetics data analysis. Ver 2.000. Genetics and Biometry Laboratory. Department of Anthropology and Ecology, University of Geneva, Geneva

    Google Scholar 

  • Shinohara G, Yabe M, Amaoka K, Meguro T (1992) A psychrolutid, Malacocottus gibber, collected from the mesopelagic zone of the Sea of Japan, with comments on its intraspecific variation. Jpn J Ichthyol 38:419–424

    Google Scholar 

  • Tada R, Irino T, Koizumi I (1999) Land-ocean linkages over orbital and millennial timescales recorded in late Quaternary sediments of the Japan Sea. Paleoceanography 14:236–247

    Article  Google Scholar 

  • Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134:659–669

    CAS  PubMed  Google Scholar 

  • Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117:343–351

    CAS  PubMed  Google Scholar 

  • Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680

    Article  CAS  PubMed  Google Scholar 

  • Tyler PA (2002) Deep-sea eukaryote ecology of the semi-isolated basins off Japan. J Oceanogr 58:333–341

    Article  Google Scholar 

  • Weir BS, Cockerham CC (1984) Estimation of F-statistics for the analysis of population structure. Evolution 38:1358–1370

    Article  Google Scholar 

  • Yamada M, Higuchi M, Goto A (2001) Extensive introgression of mitochondrial DNA found between two genetically divergent forms of threespine stickleback, Gasterosteus aculeatus, around Japan. Environ Bio Fish 61:269–284

    Article  Google Scholar 

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Acknowledgments

The authors thank the captains, officers, and crews of R/Vs Tansei-maru and Hakuho-maru (Ocean Research Institute, University of Tokyo/Japan Agency for Marine-Earth Science and Technology) and R/V Wakataka-maru (Tohoku National Fisheries Institute) for their support in sampling specimens. This study was supported in part by a grant from the Ministry of Education, Culture, Sports, Science and Technology of Japan (No. 12NP0201).

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Correspondence to Shigeaki Kojima.

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Adachi, T., Hagihara, S., Itoh, M. et al. Genetic population structure and morphological characters of Japanese psychrolutids of genus Malacocottus (Scorpaeniformes: Psychrolutidae). Ichthyol Res 56, 323–329 (2009). https://doi.org/10.1007/s10228-009-0101-6

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