Abstract
The electronic structure of the two most stable isomers of squaric acid and their complexes with BeH2 were investigated at the B3LYP/6-311 + G(3df,2p)// B3LYP/6-31 + G(d,p) level of theory. Squaric acid forms rather strong beryllium bonds with BeH2, with binding energies of the order of 60 kJ mol−1. The preferential sites for BeH2 attachment are the carbonyl oxygen atoms, but the global minima of the potential energy surfaces of both EZ and ZZ isomers are extra-stabilized through the formation of a BeH···HO dihydrogen bond. More importantly, analysis of the electron density of these complexes shows the existence of significant cooperative effects between the beryllium bond and the dihydrogen bond, with both becoming significantly reinforced. The charge transfer involved in the formation of the beryllium bond induces a significant electron density redistribution within the squaric acid subunit, affecting not only the carbonyl group interacting with the BeH2 moiety but significantly increasing the electron delocalization within the four membered ring. Accordingly the intrinsic properties of squaric acid become perturbed, as reflected in its ability to self-associate.
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Hobza P, Zahradník R, Müller-Dethlefs K (2006) The world of non-covalent interactions: 2006. Collect Czechoslov Chem Commun 71:443–531
Muller-Dethlefs K, Hobza P (2000) Noncovalent interactions: a challenge for experiment and theory. Chem Rev 100(1):143–167
Murray JS, Lane P, Brinck T, Paulsen K, Grice ME, Politzer P (1993) Relationships of critical constants and boiling points to computed molecular-surface properties. J Phys Chem 97(37):9369–9373
Boyd S, Gravelle M, Politzer P (2006) Nonreactive molecular dynamics force field for crystalline hexahydro-1,3,5-trinitro-1,3,5 triazine. J Chem Phys 124(10):104508
Murray JS, Lane P, Gobel M, Klapotke TM, Politzer P (2009) Intra- and intermolecular electrostatic interactions and their significance for the structure, acidity, and tautomerization behavior of trinitromethane. J Chem Phys 130(10):104304
Riley KE, Murray JS, Politzer P, Concha MC, Hobza P (2009) Br ···O complexes as probes of factors affecting halogen bonding: interactions of bromobenzenes and bromopyrimidines with acetone. J Chem Theory Comput 5(1):155–163
Politzer P, Murray JS, Lane P, Concha MC (2009) Electrostatically driven complexes of SiF4 with amines. Int J Quantum Chem 109(15):3773–3780
Politzer P, Murray JS, Clark T (2010) Halogen bonding: an electrostatically-driven highly directional noncovalent interaction. Phys Chem Chem Phys 12(28):7748–7757
Shields ZP, Murray JS, Politzer P (2010) Directional tendencies of halogen and hydrogen bonds. Int J Quantum Chem 110(15):2823–2832
Murray JS, Concha MC, Politzer P (2011) Molecular surface electrostatic potentials as guides to Si-O-N angle contraction: tunable sigma-holes. J Mol Model 17(9):2151–2157
Murray JS, Lane P, Clark T, Riley KE, Politzer P (2012) Sigma-holes, pi-holes and electrostatically-driven interactions. J Mol Model 18(2):541–548
Clark T, Hennemann M, Murray JS, Politzer P (2007) Halogen bonding: the sigma-hole. J Mol Model 13(2):291–296
Politzer P, Murray JS, Lane P (2007) Sigma-hole bonding and hydrogen bonding: competitive interactions. Int J Quantum Chem 107(15):3046–3052
Murray JS, Concha MC, Lane P, Hobza P, Politzer P (2008) Blue shifts vs red shifts in sigma-hole bonding. J Mol Model 14(8):699–704
Politzer P, Murray JS, Concha MC (2008) Sigma-hole bonding between like atoms; a fallacy of atomic charges. J Mol Model 14(8):659–665
Gobel M, Tchitchanov BH, Murray JS, Politzer P, Klapotka TM (2009) Chlorotrinitromethane and its exceptionally short carbon-chlorine bond. Nat Chem 1(3):229–235
Murray JS, Politzer P (2011) The electrostatic potential: an overview. WIREs Comput Mol Sci 1(2):153–163
Politzer P, Murray JS (2012) Halogen bonding and beyond: factors influencing the nature of CN-R and SiN-R complexes with F-Cl and Cl-2. Theor Chem Accounts 131(2):1114
Pimentel GC, McClelland AL (1960) The hydrogen bond. Freeman, San Francisco
Grabowski SJ (ed) (2006) Hydrogen bonding. New insights. Challenges and advances in computational chemistry and physics, vol 3. Springer, Dordrecht
Reed AE, Curtiss LA, Weinhold F (1988) Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint. Chem Rev 88(6):899–926
Yáñez M, Sanz P, Mó O, Alkorta I, Elguero J (2009) Beryllium bonds, do they exist? J Chem Theory Comput 5:2763–2771
Eskandari K (2012) Characteristics of beryllium bonds; a QTAIM study. J Mol Model. doi:10.1007/s00894-012-1360-0
IUPAC Compendium of Chemical Terminology—the Gold Book (2012). http://goldbookiupacorg/indexhtml
Rowsell BD, Gillespie FJ, Heard GL (1999) Ligand close-packing and the lewis acidity of BF3 and BCl3. Inorg Chem 38(21):4659–4662
Brinck T, Murray JS, Politzer P (1993) A computational analysis of the bonding in boron-trifluoride and boron-trichloride and their complexes with ammonia. Inorg Chem 32(12):2622–2625
Bessac F, Frenking G (2003) Why is BCl3 a stronger lewis acid with respect to strong bases than BF3? Inorg Chem 42(24):7990–7994
Alkorta I, Elguero J, Del Bene JE, Mó O, Yáñez M (2010) New insights into factors influencing B-N bonding in X:BH3-nFn and X:BH3-nCln for X = N2, HCN, LiCN, H2CNH, NF3, NH3 and n = 0-3: the importance of deformation. Chem-Eur J 16(39):11897–11905
Hurtado M, Yáñez M, Herrero R, Guerrero A, Dávalos JZ, Abboud J-LM, Khater B, Guillemin JC (2009) The ever-surprising boron chemistry. Enhanced acidity of phosphine-boranes. Chem Eur J 15:4622–4629
Martín-Sómer A, Lamsabhi AM, Mó O, Yáñez M (2012) Unexpected acidity enhancement triggered by AlH3 association to phosphines. J Phys Chem A 116:6950–6954
Alkorta I, Blanco F, Deyà PM, Elguero J, Estarellas C, Frontera A, Quiñonero D (2010) Cooperativity in multiple unusual weak bonds. Theor Chem Accounts 126:1–14
Mó O, Yáñez M, Alkorta I, Elguero J (2012) Modulating the strength of hydrogen bonds through beryllium bonds. J Chem Theory Comput 8:2293–2300
Cohen S, Lacher JR, Park JD (1959) Diketocyclobutenediol. J Am Chem Soc 81(13):3480–3480
Semmingsen D, Hollander FJ, Koetzle TF (1977) Neutron-diffraction study of squaric acid (3,4-dihydroxy-3-cyclobutene-1,2-dione). J Chem Phys 66(10):4405–4412
Becke AD (1993) Density-functional thermochemistry. III. The role of exact exchange. J Chem Phys 98(7):5648–5652
Lee C, Yang W, Parr RG (1988) Development of the colle-salvetti correlation-energy formula into a functional of the electron density. Phys Rev B 37(2):785–789
Merrick JP, Moran D, Radom L (2007) An evaluation of harmonic vibrational frequency scale factors. J Phys Chem A 111(45):11683–11700
Johnson ER, Keinan S, Mori-Sanchez P, Contreras-Garcia J, Cohen AJ, Yang W (2010) Revealing noncovalent interactions. J Am Chem Soc 132(18):6498–6506
Contreras-García J, Johnson ER, Keinan S, Chaudret R, Piquemal JP, Beratan DN, Yang WT (2011) NCIPLOT: a program for plotting noncovalent interaction regions. J Chem Theory Comput 7(3):625–632
Wiberg KB (1968) Application of pople-santry-segal CNDO method to cyclopropylcarbinyl and cyclobutyl cation and to bicyclobutane. Tetrahedron 24(3):1083–1088
Bader RFW (1990) Atoms in molecules. A quantum theory. Clarendon, Oxford
Becke AD, Edgecombe KE (1990) A simple measure of electron localization in atomic and molecular systems. J Chem Phys 92(9):5397–5403
Savin A, Nesper R, Wengert S, Fäsler TF (1997) ELF: the electron localization function. Angew Chem Int Ed Engl 36:1808–1832
Popelier PLA (1998) Characterization of a dihydrogen bond on the basis of the electron density. J Phys Chem A 102(10):1873–1878
Matta CF, Hernandez-Trujillo J, Tang TH, Bader RFW (2003) Hydrogen-hydrogen bonding: a stabilizing interaction in molecules and crystals. Chem Eur J 9(9):1940–1951
Grabowski S, Sokalski WA, Leszczynski J (2004) Nature of X-H + delta center dot center dot center dot-delta H-Y dihydrogen bonds and X-H-···sigma interaction. J Phys Chem A 108(27):5823–5830
Hugas D, Simon S, Duran M (2007) Electron density topological properties are useful to assess the difference between hydrogen and dihydrogen complexes. J Phys Chem A 111(20):4506–4512
Wolstenholme DJ, Matta CF, Cameront TS (2007) Experimental and theoretical electron density study of a highly twisted polycyclic aromatic hydrocarbon: 4-methyl-[4]helicene. J Phys Chem A 111(36):8803–8813
Alkorta I, Elguero J, Solimannejad M (2008) Dihydrogen bond cooperativity in (HCCBeH)(n) clusters. J Chem Phys 129(6):8
Filippov OA, Tsupreva VN, Golubinskaya LM, Krylova AI, Bregadze VI, Lledos A, Epstein LM, Shubina ES (2009) Proton-transfer and H-2-elimination reactions of trimethylamine alane: role of dihydrogen bonding and lewis acid-base interactions. Inorg Chem 48(8):3667–3678
Zabardasti A, Kakanejadifard A, Hoseini AA, Solimannejad M (2010) Competition between hydrogen and dihydrogen bonding: interaction of B2H6 with CH3OH and CHnX3-nOH derivatives. Dalton Trans 39(25):5918–5922
Oliveira BG, Araujo R, Silva JJ, Ramos MN (2010) A theoretical study of three and four proton donors on linear HX ···BeH2 ···HX and bifurcate BeH2 ···2HX trimolecular dihydrogen-bonded complexes with X = CN and NC. Struct Chem 21(1):221–228
de Oliveira BG, Ramos MN (2010) Dihydrogen bonds and blue-shifting hydrogen bonds: a theoretical study of AH ···HCF3 and TH2 ···HCF3 model systems with A = Li or Na and T = Be or Mg. Int J Quantum Chem 110(2):307–316
Solimannejad M, Malekani M, Alkorta I (2010) Cooperative and diminutive unusual weak bonding in F3CX ···HMgH ···Y and F3CX ···Y ···HMgH trimers (X = Cl, Br; Y = HCN, and HNC). J Phys Chem A 114(45):12106–12111
Zabardasti A, Zare N, Arabpour M (2011) Theoretical study of dihydrogen bonded clusters of water with tetrahydroborate. Struct Chem 22(3):691–695
Zabardasti A, Arabpour M (2012) Theoretical study of hydrogen and dihydrogen bond interaction of B6H10 with the HF molecule. Struct Chem 23(2):473–477
González L, Mó O, Yáñez M, Elguero J (1998) Very strong hydrogen bonds in neutral molecules: the phosphinic acid dimers. J Chem Phys 109(7):2685–2693
Acknowledgments
This work has been supported partially by the Dirección General de Investigación Projects No. CTQ2009-13129-C01, by the Project MADRISOLAR2, Ref.: S2009PPQ/1533 of the Comunidad Autónoma de Madrid, and by Consolider on Molecular Nanoscience CSC2007-00010. A generous allocation of computing time at the Centro de Computación Científica of the Universidad Autónoma de Madrid is also acknowledged.
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Montero-Campillo, M.M., Lamsabhi, A.M., Mó, O. et al. Modulating weak intramolecular interactions through the formation of beryllium bonds: complexes between squaric acid and BeH2 . J Mol Model 19, 2759–2766 (2013). https://doi.org/10.1007/s00894-012-1603-0
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DOI: https://doi.org/10.1007/s00894-012-1603-0