Mechanisms of viral entry: sneaking in the front door
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- Thorley, J.A., McKeating, J.A. & Rappoport, J.Z. Protoplasma (2010) 244: 15. doi:10.1007/s00709-010-0152-6
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Recent developments in methods to study virus internalisation are providing clearer insights into mechanisms used by viruses to enter host cells. The use of dominant negative constructs, specific inhibitory drugs and RNAi to selectively prevent entry through particular pathways has provided evidence for the clathrin-mediated entry of hepatitis C virus (HCV) as well as the caveolar entry of Simian Virus 40. Moreover, the ability to image and track fluorescent-labelled virus particles in real-time has begun to challenge the classical plasma membrane entry mechanisms described for poliovirus and human immunodeficiency virus. This review will cover both well-documented entry mechanisms as well as more recent discoveries in the entry pathways of enveloped and non-enveloped viruses. This will include viruses which enter the cytosol directly at the plasma membrane and those which enter via endocytosis and traversal of internal membrane barrier(s). Recent developments in imaging and inhibition of entry pathways have provided insights into the ill-defined entry mechanism of HCV, bringing it to the forefront of viral entry research. Finally, as high-affinity receptors often define viral internalisation pathways, and tropism in vivo, host membrane proteins to which viral particles specifically bind will be discussed throughout.
KeywordsVirusesViral entryHost cellsVesicle traffickingEndocytosisEndocytic trafficking
Viruses are obligate intracellular pathogens and entry into the host cell is a critical step in the viral life cycle. Cellular membranes present a barrier between the viral particle and intracellular site(s) of replication in the cytosol or nucleus. While enveloped viruses are bound by a lipid bilayer, non-enveloped viruses are surrounded by a proteinaceous capsid. Both enveloped viruses and non-enveloped viruses have evolved complex and often poorly defined mechanisms to enter cells. Identification of host cell receptors and their trafficking pathways provide tools to study viral entry. Although this generally involves the endocytic processes of the host cell, the exact entry mechanisms of many medically important viruses, such as hepatitis C virus (HCV), have yet to be fully elucidated.
The entry of both enveloped and non-enveloped viral particles requires specific interactions between host cell molecules, or receptors, and viral encoded envelope or capsid proteins. One key result of this is to bring the virus into close contact with the plasma membrane and in some documented cases, to initiate a cascade of signalling events important to the viral life cycle (Dangoria et al. 1996). In addition to primary receptors critical for virus attachment to the cell surface (e.g. CD4 for human immunodeficiency virus (HIV)), important co-receptors have been identified (e.g. chemokine receptors CXCR4 or CCR5 for HIV). It is now becoming apparent that a wide variety of host cell molecules are important for virus internalisation in the absence of any direct association with the virus particle. This is leading to the notion of “entry factors”, for example the tight junction proteins claudin-1 and occludin appear to have an indirect role in HCV entry (Ploss et al. 2009).
Following attachment to the host cell surface, virus entry at the plasma membrane has been described for many viruses such as HIV and Poliovirus (PV; Stein et al. 1987; Dunnebacke et al. 1969). Enveloped viruses can fuse directly with the plasma membrane, releasing the capsid directly into the cytosol, whilst non-enveloped viruses disrupt or form pore(s) in the plasma membrane to gain entry. In contrast to fusion at the plasma membrane, many viruses (such as SV40 and Influenza A) utilise intracellular trafficking pathways to fuse with internal membranes in order to release their genomic material into the cytosol (Anderson et al. 1996; Lakadamyali et al. 2004). The biophysical mechanisms of endosomal entry have been well documented (Cohen et al. 1984; Sarkar et al. 1989; Lee 2010).
Host cells offer a variety of internalisation mechanisms for virus entry, including: macropinocytosis (cell drinking), a process where substances present in extracellular fluid are internalised in a non-specific manner, and receptor-mediated endocytosis, including the well-described clathrin- and caveolar-dependent pathways, in addition to the more recently described lipid-raft-based endocytic mechanisms that are clathrin and caveolin independent. Receptor trafficking pathways often define particle internalisation routes and viruses typically enter the cell by a single defined pathway, although examples have been reported where viruses utilise multiple pathways in diverse cell types (Meier et al. 2002; Damm et al 2005; Patel et al 2009).
The majority of host cell membrane proteins internalise through clathrin-mediated endocytosis. Whilst the clathrin-mediated pathway is ubiquitous, caveolae have only been demonstrated in a limited number of cell types. Nevertheless, caveolar entry pathways have been described for a selected number of viruses including SV40 and human coronavirus 229E (Anderson et al. 1996; Nomura et al. 2004; Kawase et al. 2009). However, SV40 has also been reported to infect cells devoid of caveolae (Damm et al. 2005).
Non-enveloped viruses can enter the cytosol by directly penetrating the plasma membrane, as well as through a variety of endocytic mechanisms leading to penetration of internal membrane(s). Internal membranes crossed by non-enveloped viruses include the endosomal membrane (e.g. adenovirus; Wickham et al. 1993), the Golgi (e.g. papillomavirus; Day et al. 2003) and the endoplasmic reticulum (e.g. SV40; Pelkmans et al. 2001; Schelhaas et al. 2007). Strategies to disrupt or traverse host cell membranes must be included in the mechanisms of non-enveloped virus entry. However, the precise molecular and biophysical means by which non-enveloped viruses gain entry to the cytosol have not been clearly defined in all cases. The entry mechanisms of the non-enveloped viruses PV, AdV 2/5 and SV40 will be discussed below.
Early electron micrographs of PV-infected cells demonstrated virus particles adjacent to and directly penetrating the plasma membrane (Dunnebacke et al. 1969). Such evidence gave rise to a long-standing belief that PV entry occurs directly at the cell surface. However, use of drugs such as the ionophore monensin to dissipate cellular proton gradients suggested a pH-dependent route of PV entry (Madshus et al. 1984a, b), contradicting the earlier electron microscopic observations. It was known that under low pH, substances such as diphtheria toxin exposed a hydrophobic region which could insert into the membrane (Sandvig and Olsnes 1980). To investigate such a model for PV entry, Madshus and colleagues measured PV entry into the detergent phase of Triton-X114 under different pH conditions (Madshus et al. 1984a, b). The results indicated that PV was hydrophilic at neutral pH but became amphipathic at low pH, suggesting the exposure of hydrophobic regions or ‘fusion domains’. These data suggest PV association with cellular receptors induced the exposure of hydrophobic regions at low pH. Although it is possible that micro-regions of low pH occur at the cell surface, apart from specialised tissues such as the stomach, extracellular fluid is typically neutral, suggesting that PV enters cells via an acidic intracellular compartment.
Recent developments allowing the imaging of fluorescent PV in live cells have supported an endocytic internalisation route (Brandenburg et al. 2007). Furthermore, the involvement of actin in the entry process was implicated by inhibition of infection following incubation with cytochalasin D. Use of siRNA and inhibitors of clathrin-, caveolin- and flotillin-dependent pathways as well as macropinocytosis suggest that PV entry is independent of all these cellular pathways (Brandenburg et al. 2007). This study also used total internal reflection fluorescence microscopy to demonstrate that genome release into the cytosol occurs from recently internalised vesicles, close to the cell surface. Taken together, recent studies of PV entry highlight an endocytic event that is independent of the classical clathrin- and caveolin-mediated pathways, followed by low pH-mediated exposure of hydrophobic residues in an early endocytic vesicle. Recent reports of clathrin- and caveolin-independent routes of endocytosis await further clarification (reviewed in Kirkham and Parton 2005), and it is likely that studies of PV entry will provide important information about alternative endocytic mechanisms operating in host cells.
Early studies on SV40 entry found the internalisation pathway to differ in several ways from the classical clathrin-mediated endocytic process described for many viruses. Firstly, electron micrographs of SV40-infected cells showed the majority of particles in small tight-fitting vesicles, which appeared to be uncoated (Hummeler et al. 1970). These vesicles were able to fuse to generate larger compartments within the cell (which we now term caveosomes; Maul et al. 1978). Secondly, these vesicles could be tracked to the ER, rather than the endosomal/lysosomal compartment, which is the fate of most endocytosed viruses (Maul et al. 1978; Pelkmans et al. 2001; Norkin et al. 2002). Moreover, the ability of SV40 to internalise into different endocytic compartments was dependent on the capacity to be enveloped by cellular membranes. Subsequently, the caveolar entry pathway of SV40 was confirmed by the use of drugs found to disrupt caveolae, such as nystatin, which inhibited SV40 entry (Anderson et al. 1996).
However, as relatively stable membrane domains, it was unclear how caveolae could offer a productive entry pathway for SV40. The related murine polyoma virus has also been reported to internalise via caveolae (Richterová et al. 2001; Gilbert et al. 2003; Liebl et al. 2006), but, while SV40 employs the class I Major Histocompatability Complex as a receptor, murine polyoma virus interacts with sialyloligosaccharide receptors (Breau et al. 1992; Stehle and Harrison 1996). Furthermore, murine polyoma virus binding to host cells induces an up-regulation of primary and early response genes that regulate particle internalisation (Zullo et al. 1987; Glenn and Eckhart 1990). SV40–host cell interactions induce an intracellular signalling event that up-regulates the expression of primary response genes c-myc, c-jun, c-cis within 30 min and JE, a PDGF-inducible gene encoding monocyte chemoattractant MCP-1, within 90 min (Dangoria et al. 1996). SV40 up-regulation of both c-myc and c-jun was blocked by the tyrosine kinase inhibitor genistein. Furthermore, genistein was shown to block SV40 infection in a reversible manner, resulting in a model where SV40 binding induces a signalling pathway that primes particle internalisation. More recently, labelling of the virus and use of live-cell imaging have demonstrated a role for actin in SV40 internalisation and trafficking (Pelkmans et al. 2002). Upon virus binding, a transient breakdown of actin-stress fibres was observed. After leaving the caveosome, labelled SV40 trafficked in tubular, caveolin-free vesicles, which move along microtubules to fuse with smooth ER organelles (Pelkmans et al. 2001; Schelhaas et al. 2007).
Recent data showing SV40 entry into cells lacking detectable caveolae, including the human hepatoma Huh7 cell line and embryonic fibroblasts from a Cav1 knockout mouse, suggest alternative pathways may be in operation (Damm et al. 2005). The same authors noted caveolin-independent SV40 internalisation in wild-type embryonic fibroblasts with an active caveolar pathway (Damm et al. 2005). In all of the aforementioned cells, viruses were seen to internalise in small, tight-fitting vesicles similar to those seen in the first EM images of SV40-infected cells. SV40 was subsequently transported to pH-neutral organelles, which resembled caveosomes despite being devoid of both Cav1 and Cav2 (Damm et al. 2005). Importantly, expression of SV40 encoded T-antigen suggests these caveolin-independent pathway(s) represent productive infection. The observation that this entry mechanism was observed in cells with detectable Cav1, indicates that this alternative pathway is active even in the presence of Cav1. This could represent further evidence of host cell endocytic mechanisms acting independently of clathrin and caveolin, similar to that utilised by Adenovirus 2/5 (AdV 2/5).
AdV 2 and 5 are non-oncogenic adenoviruses that infect the upper respiratory tract. Ad2 and Ad5 bind to coxsackie virus B Ad receptor (CAR; Leon et al. 1998). CAR is expressed at different levels on different tissues and is the primary determinant for susceptibility to Ad infection (Bergelson et al. 1997; Meier and Greber 2004). In addition to a requirement for CAR binding, activation of αv-integrin is necessary for virus entry into cells (Wickham et al. 1993; Greber et al 1993; Wang et al. 1998).
Although the use of dominant negative constructs of Eps15 (required for clathrin-mediated endocytosis) and dynamin (required for vesicle fission) seemed to confirm the clathrin-mediated entry pathway, AdV was reported to stimulate the uptake of fluid phase markers, largely via macropinocytosis (Wang et al. 1998; Meier et al. 2002). Whilst this could result from virus disruption of general membrane integrity, the process was shown to be dependent on αv-integrin, protein kinase C, F-actin and the amiloride-sensitive sodium/proton exchanger, all of which are involved in the AdV endosomal escape mechanism (Meier et al. 2002). Taken together, these results suggest a model whereby AdV 2/5 binds to CAR and activates integrin co-receptors leading to the clathrin-mediated endocytosis of the virus. This is followed by trafficking to the early endosome, where low pH mediates endosomal escape (Gastaldelli et al. 2008). Alongside endosomal escape, macropinocytosis is stimulated leading to the non-specific internalisation of virus particles from the extracellular environment. It is unclear whether this is a coincidental side effect of adenovirus infection, or whether this represents a manipulation of host cell machinery to ensure the uptake of more virions.
As the name implies, CAR also acts as the receptor for coxsackie B group viruses (CVB), which are known to infect polarised epithelia (Coyne and Bergelson 2005). As CAR is a component of tight junctions, it is inaccessible to virus on the apical side of the epithelium, for example, viral particles in the intestinal lumen. Many isolates of CVB interact with decay accelerating factor (DAF or CD55), a GPI-anchored protein, which is expressed on the apical surface, and is accessible to virus. Virus attachment to DAF on the apical surface is thought to trigger signalling events culminating in actin rearrangement and virus movement to the tight junction (Coyne and Bergelson 2006; Coyne et al. 2007). Signalling events induced by virus interaction with DAF are thought to induce caveolar endocytosis of virus at the tight junction (Coyne et al. 2007; Coyne et al. 2009). Moreover, although not involved in CVB binding, particle internalisation from the tight junction is dependent on occludin (Coyne et al. 2007). Cell polarity and viral receptors localised to the tight junction are also important factors in hepatitis C virus entry, which will be discussed below.
Infection with an enveloped virus requires the fusion of the viral envelope with a cellular membrane. In some cases, this can occur at the plasma membrane, as reported for HIV, where binding to plasma membrane-expressed forms of CD4 and chemokine receptors induce changes in the viral envelope glycoprotein that are thought to mediate membrane fusion under neutral pH conditions. Fusion of other enveloped viruses occurs within the low-pH environment of an acidic endosomal compartment. Enveloped viruses typically reach the endosomal compartment via trafficking in clathrin-coated vesicles, although a caveolar route of entry has been reported for human coronavirus 229E (Nomura et al. 2004; Kawase et al. 2009). Examples of enveloped viruses with entry mechanisms of particular interest are HCV, influenza A and HIV and will be discussed in more detail below.
Hepatitis C virus is a hepatotropic enveloped virus associated with liver disease, fibrosis, cirrhosis and hepatocellular carcinoma. The HCV particle comprises a single-stranded positive-sense RNA surrounded by an icosahedral capsid and envelope derived from a host cell lipid bilayer (Bartosch and Cosset 2006). HCV encodes two envelope glycoproteins E1 and E2 which play a critical role in binding host cell surface receptors and membrane fusion (Keck et al. 2004; Op De Beeck et al. 2004; Helle and Dubuisson 2008). Recombinant forms of HCV E2 were used to identify interaction(s) with host cell proteins, tetraspanin CD81 (Pileri et al. 1998; Bartosch et al. 2003a; Cormier et al. 2004; Flint et al. 2006) and scavenger receptor B type I (SR-BI; Scarselli et al. 2002; Grove et al. 2007; Catanese et al. 2010). The recent development of infectious lentiviral pseudoparticles bearing HCV glycoproteins (HCVpp; Bartosch et al. 2003b; Hsu et al. 2003; Drummer et al. 2003), and native HCV capable of replication in cell culture (HCVcc; Lindenbach et al. 2005; Wakita et al. 2005; Zhong et al. 2005) have enabled studies to validate the role of CD81 and SR-BI in HCV entry. Following development of these experimental systems, the tight junction proteins Claudin-1 and Occludin were recently reported to be essential for virus internalisation (Evans et al. 2007; Zheng et al. 2007; Yang et al. 2008; Liu et al. 2009; Ploss et al. 2009). HCVpp bearing diverse glycoproteins of all major genotypes show a marked preference for infecting liver-derived cells suggesting that receptor-dependent entry events may in part define hepatotropism (Bartosch et al. 2003c; McKeating et al. 2004).
Hepatocytes in the liver are highly polarised with bile canaliculi, surrounded by tight junctions, running between adjacent cells at the apical membrane. HCV enters the liver via the sinusoidal blood and is likely to encounter the basolateral surface of hepatocytes. The observation that CD81 and SR-BI localise at basolateral hepatocellular membranes (Reynolds et al. 2008) is consistent with particle attachment occurring at this site. Recent data from our laboratory demonstrate a role for CD81–claudin complexes in HCV entry (Harris et al. 2008; Harris et al. 2010 JBC submitted). The involvement of tight junction proteins has raised many questions about HCV entry. For example, does the virus need to locate to tight junctions to internalise? Current data demonstrate that HCV E2 engagement of CD81 promotes clathrin-mediated endocytosis and there is limited evidence to support a role for CD81-induced movement of the virus to tight junctions in polarised hepatoma cells (Farquhar, personal communication).
Soon after the development of HCVpp and HCVcc, the use of drugs such as Bafilomycin A1 and concanamycin A (which inhibit the vacuolar ATPase, dissipating membrane proton gradients) demonstrated the pH-dependence of HCV entry, implicating the involvement of receptor-mediated endocytosis and fusion in an acidic endosomal compartment (Hsu et al. 2003; Blanchard et al. 2006; Tscherne et al. 2006). Furthermore, the use of dominant negative constructs of Eps15 and dynamin demonstrated a clathrin-mediated endocytic entry process (Meertens et al. 2006). A recent siRNA study confirmed the involvement of several genes involved in clathrin-mediated endocytosis and actin polymerisation in the viral entry process and used time-lapse imaging to observe viral entry in live unpolarised liver-derived cells (Coller et al. 2009). The authors demonstrated an association between labelled HCV and clathrin, suggesting that virions bind to filopodia and traffic towards the cell body, where endocytosis occurs. However, analysis of viral particles in polarised cells will be necessary before the exact entry pathway of the virus is clear.
The entry process of Influenza A is a much-studied topic and differs from the simple membrane fusion processes described for the majority of enveloped viruses. The first electron micrographs of influenza-infected cells demonstrated particles inside cytoplasmic compartments. Subsequently, the particles were seen to penetrate the membrane of this compartment followed by genome release in the cytosol (Dourmashkin and Tyrrell 1974). While this evidence pointed towards an endocytic mechanism of entry, the images failed to show the fusion of viral and host cell membranes that is believed to play a critical role in escaping the low pH environment of the endosome.
Lysosomotropic agents such as ammonium chloride (Matlin et al. 1981) and chloroquine (Yoshimura et al. 1982) inhibited influenza infection, suggesting an endocytic entry pathway. Many studies have demonstrated the pH-dependence of the Influenza entry mechanism (Guinea and Cerrasco 1994; Guinea and Cerrasco 1995), where fusion with the plasma membrane occurs at pH 5.5 or below but not in less acidic environments (Matlin et al. 1981). Further evidence for an endocytic entry mechanism includes dynamin dependence and the involvement of the Rab GTPases Rab5 and Rab7 (Roy et al. 2000; Sieczkarski and Whittaker 2003). Taken together, the data point towards endocytosis in coated pits followed by trafficking to an acidic internal compartment where low pH mediates membrane fusion and the release of the viral genetic material into the cytosol.
Influenza binds to cell surface sialic acid residues via interaction with the viral hemagglutinin (HA) glycoprotein (Weiss et al. 1988). Interestingly, strain-specific viral tropism is dependent on the specific types of sialic acids expressed on the target cell surface (Carroll et al. 1981). HA is critical for influenza fusion with host cells, which does not passively occur in the presence of low pH but is triggered in an HA-dependent process. HA is a trimeric spike glycoprotein which undergoes an irreversible conformational change at low pH which is necessary for endosomal escape of the virus. Evidence suggests that this process involves the insertion of the coiled coil of the HA trimer into the membrane, bringing the viral envelope and endosomal membranes into close contact and facilitating membrane fusion (Doms and Helenius 1986; Chambers et al. 1990; Yu et al. 1994).
Various aspects of the influenza A entry process represent targets of a new class of antivirals, entry inhibitors (Voss et al. 2008; Saong et al. 2009; Yamaya et al. 2010). Whilst Influenza entry inhibitors are not currently clinically available, one recent study found clarithromycin, the macrolide antibiotic clinically used to treat pharyngitis and tonsillitis could inhibit two steps in the influenza virus entry process (Yamaya et al. 2010). The drug was found to reduce expression of sialic acid residues on the surface of airway epithelial cells, reducing virus binding, as well as reducing the number of acidic endosomes in the cell, inhibiting endosomal escape.
Despite being extensively studied, the entry process of HIV, the causative agent of AIDS remains a debated issue. At a relatively early stage in the study of HIV infection, CD4 was identified as an essential receptor molecule defining HIV infection (Dalgleish et al. 1984). However, it soon became clear that CD4 was not the sole determinant of HIV entry and the chemokine receptors, CCR5 and CXCR-4, were implicated as co-receptors (Broder and Dimitrov 1996; Feng et al. 1996; Deng et al. 1996; Dragic et al. 1996). The importance of HIV co-receptors was evident in the observation that humans with mutant CCR-5 are resistant to HIV infection (Samson et al. 1996). Our current understanding of the role of these HIV receptors in viral fusion supports an interaction with the primary receptor CD4 that leads to conformational change(s) that primes the virus to interact with CCR5. It is this receptor complex formation which alters the conformation of gp160 and leads to pH-independent gp41 fusion (Chan et al. 1997; Tan et al. 1997; Weissenhorn et al. 1997).
It has long been thought that productive entry of HIV occurs via direct fusion of the viral envelope with the host cell plasma membrane. One key piece of evidence for an endocytic-independent entry is the observation that infection is insensitive to neutralisation of endosomal pH (Stein et al. 1987). In fact, blocking endosome acidification was in some cases seen to augment viral infection, perhaps by sparing particles from lysosomal degredation (Fredericksen et al. 2002; Schaeffer et al. 2004; Wei et al. 2005). Despite this long-standing belief, EM studies have shown internalised virions in membrane-bound vesicles (Pauza and Price 1988; Grewe et al. 1990). Moreover, the rates of entry and uncoating of radiolabelled virions in the human T-lymphoid cell line CEM were consistent with a receptor-mediated mechanism of entry (Pauza et al. 1988). However, CD4 endocytosis was not required for HIV entry, suggesting that endocytosed particles were degraded by host cell lysosomes (Maddon et al. 1988).
Whilst the clathrin-mediated entry pathway has been documented for almost as long as the classical plasma membrane entry mechanism, it has only recently been confirmed that this route offers a productive entry pathway for HIV (Daecke et al. 2005). Recent data may even suggest that clathrin-mediated HIV entry is the only productive pathway for infection (Miyauchi et al. 2009). In fact, live cell imaging has demonstrated that HIV fusion at the plasma membrane did not proceed further than mixing of lipids and could therefore not lead to productive infection.
Individual steps in the HIV entry process have become the target for the development of antiviral entry inhibitors (for review see Kuritzkes 2009). These include inhibitors of the CD4–gp120 interaction (Guo et al. 2003; Lin et al. 2003), post-attachment inhibitors such as ibalizumab, which is thought to decrease CD4 flexibility, inhibiting access of CD4–gp120 to chemokine receptors (Burkly et al. 1992; Burkly et al. 1995; Kuritzkes et al. 2004) and inhibitors of the fusion process such as Enfuvirtide (Wild et al. 1994; Lalezari et al. 2003). Fusion inhibitors have perhaps been the most successful of these inhibitors to date, with Enfuvirtide approved for clinical use following phase 3 clinical trials (Clotet et al. 2007; Hicks et al. 2006).
The use of specific drugs, dominant negative constructs and siRNA to inhibit specific internalisation pathways have provided insights into viral entry mechanisms, providing evidence for clathrin-mediated entry of HCV as well as the caveolar-dependent entry of SV40. Recent developments in live-cell imaging have allowed the real-time tracking of fluorescent virus particles and have advanced our understanding of HCV entry in addition to challenging the classical plasma membrane pathways of two well-studied viruses, HIV and PV. However, the more information gained through these new techniques, the more complicated viral entry mechanisms seem to become, with AdV and influenza A seeming to enter via two distinct mechanisms. Further studies involving single-particle tracking of fluorescent-labelled virus particles in real-time will help elucidate the mechanisms of entry of many viruses and provide a greater understanding of the endocytic mechanisms active within the host cell which these viruses exploit.
The authors would like to thank the Medical Research Council (MRC) for funding JAT’s doctoral studentship.