Archives of Virology

, Volume 158, Issue 10, pp 2185–2188

The first complete genomic characterization of an Amur virus isolate from China

  • Yu Zhang
  • Bo-Hua Liu
  • Fang Lin
  • Yong-Guo Zhang
  • Bing-Yin Si
  • Xiao-Ping Kang
  • Yi Hu
  • Jing Li
  • Xiao-Yan Wu
  • Yu-Chang Li
  • Qing-Yu Zhu
  • Yin-Hui Yang
Annotated Sequence Record

DOI: 10.1007/s00705-013-1633-7

Cite this article as:
Zhang, Y., Liu, BH., Lin, F. et al. Arch Virol (2013) 158: 2185. doi:10.1007/s00705-013-1633-7

Abstract

Amur virus (AMRV) is a member of the genus Hantavirus in the family Bunyaviridae. In this study, we determined for the first time the complete genome sequence of the AMRV H8205 strain, which was isolated from a patient with hemorrhagic fever with renal syndrome (HFRS) in China. The complete nucleotide sequence of the S segment of AMRV H8205 is 1699 nt long, with a 5’ noncoding region (5’NC) of 36 nt, followed by a coding sequence of 1290 nt and a 3’NC of 373 nt. The complete sequence of the M segment is 3615 nt long, with a 5’NC of 40 nt, followed by a coding sequence of 3408 nt and a 3’NC of 167 nt. The complete sequence of the L segment is 6536 nt long, with a 5’NC of 37 nt, followed by a coding sequence of 6453 nt and a 3’NC of 40 nt. The major open reading frame (ORF) of each of the three segments (S, nt 37-1326; M, nt 41-3445; L, nt 38-6490) has a coding capacity of 430 aa, 1135 aa, 2151 aa, respectively. Phylogenetic analysis of the nucleotide sequences using the NJ method indicated that H8205 virus, together with the Amur strains isolated from Far-Eastern Russia and Korea, forms a well-supported lineage. Our results will provide insights into the genetic diversity of hantaviruses (HNTV).

Supplementary material

705_2013_1633_MOESM1_ESM.doc (48 kb)
Supplementary material 1 (DOC 48 kb)
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Supplementary material 2 (DOC 104 kb)
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Supplementary material 3 (DOC 585 kb)
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Supplementary material 4 (DOC 416 kb)
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Supplementary material 5 (DOC 33 kb)
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Supplementary material 6 (TIFF 1279 kb)
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Supplementary material 7 (TIFF 320 kb)

Copyright information

© Springer-Verlag Wien 2013

Authors and Affiliations

  • Yu Zhang
    • 1
  • Bo-Hua Liu
    • 1
  • Fang Lin
    • 2
  • Yong-Guo Zhang
    • 1
  • Bing-Yin Si
    • 1
  • Xiao-Ping Kang
    • 1
  • Yi Hu
    • 1
  • Jing Li
    • 1
  • Xiao-Yan Wu
    • 1
  • Yu-Chang Li
    • 1
  • Qing-Yu Zhu
    • 1
  • Yin-Hui Yang
    • 1
  1. 1.State Key laboratory of Pathogens and BiosecurityBeijing Institute of Microbiology and EpidemiologyBeijingPeople’s Republic of China
  2. 2.Second Artillery General Hospital of PLABeijingPeople’s Republic of China