Genotyping of Korean isolates of infectious hematopoietic necrosis virus (IHNV) based on the glycoprotein gene Authors
First Online: 01 August 2007 Received: 07 March 2007 Accepted: 08 June 2007 DOI:
Cite this article as: Kim, W., Oh, M., Nishizawa, T. et al. Arch Virol (2007) 152: 2119. doi:10.1007/s00705-007-1027-9 Summary
Glycoprotein (G) gene nucleotide sequences of four Korean isolates of infectious hematopoietic necrosis virus (IHNV) were analyzed to evaluate their genetic relatedness to worldwide isolates. All Korean isolates were closely related to Japanese isolates of genogroup JRt rather than to those of North American and European genogroups. It is believed that Korean IHNV has been most likely introduced from Japan to Korea by the movement of contaminated fish eggs. Among the Korean isolates, phylogenetically distinct virus types were obtained from sites north and south of a large mountain range, suggesting the possibility of more than one introduction of virus from Japan.
References Enzmann, PJ, Kurath, G, Fichtner, D, Bergmann, SM 2005 Infectious hematopoietic necrosis virus: monophyletic origin of European isolates from North American genogroup M Dis Aquat Org 66 187 195 PubMed CrossRef
Felsenstein J (2002) PHYLIP (Phylogeny inference package) version 3.6a3. Distributed by the author, Department of genome sciences, University of Washington, Seattle
Garver, KA, Troyer, RM, Kurath, G 2003 Two distinct phylogenetic clades of infectious hematopoietic necrosis virus overlap within the Columbia River basin Dis Aquat Org 55 187 203 PubMed CrossRef Kim, KH, Kim, YJ, Jung, SJ, Jung, TS, Oh, MJ 2003 Isolation and characterization of infectious hematopoietic necrosis virus causing high mortality in rainbow trout Oncorhynchus mykiss J Fish Path 16 81 90 Kimura, T, Yoshimizu, M 1991 Viral diseases of fish in Japan Annu Rev Fish Dis 1 67 82 CrossRef Kurath, G, Ahern, KG, Pearson, GD, Leong, JC 1985 Molecular cloning of the six mRNA species of infectious hematopoietic necrosis virus, a fish rhabdovirus, and gene order determination by R-loop mapping J Virol 53 469 476 PubMed Kurath, G, Garver, KA, Troyer, RM, Emmenegger, EJ, Einer-Jensen, K, Anderson, ED 2003 Phylogeography of infectious hematopoietic necrosis virus in North America J Gen Virol 84 803 814 PubMed CrossRef Miller, TA, Rapp, J, Wastlhuber, U, Hoffmann, RW, Enzmann, PJ 1998 Rapid and sensitive reverse transcriptase-polymerase chain reaction based detection and differential diagnosis of fish pathogenic rhabdoviruses in organ samples and cultured cells Dis Aquat Org 34 13 20 PubMed CrossRef Morzunov, SP, Winton, JR, Nichol, ST 1995 The complete genome structure and phylogenetic relationship of infectious hematopoietic necrosis virus Virus Res 38 175 192 PubMed CrossRef Nichol, ST, Rowe, JE, Winton, JR 1995 Molecular epizootiology and evolution of the glycoprotein and non-virion protein genes of infectious hematopoietic necrosis virus, a fish rhabdovirus Virus Res 38 159 173 PubMed CrossRef Nishizawa, T, Kinoshita, S, Kim, WS, Higashi, S, Yoshimizu, M 2006 Nucleotide diversity of Japanese isolates of infectious hematopoietic necrosis virus (IHNV) based on the glycoprotein gene Dis Aquat Org 71 267 272 PubMed CrossRef Park, MA, Sohn, SG, Lee, SD, Chun, SK, Park, JW, Fryer, JL, Hah, YC 1993 Infectious haematopoietic necrosis virus from salmonids cultured in Korea J Fish Dis 16 471 478 CrossRef Perrière, G, Gouy, M 1996 WWW-Query: an on-line retrieval system for biological sequence banks Biochimie 78 364 369 PubMed CrossRef Thompson, JD, Gibson, TJ, Plewniak, F, Jeanmougin, F, Higgins, DG 1997 The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 PubMed CrossRef Thompson, JD, Higgins, DG, Gibson, TJ 1994 Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 PubMed CrossRef Troyer, RM, Kurath, G 2003 Molecular epidemiology of infectious hematopoietic necrosis virus reveals complex virus traffic and evolution within southern Idaho aquaculture Dis Aquat Org 55 175 185 PubMed CrossRef Troyer, RM, LaPatra, SE, Kurath, G 2000 Genetic analyses reveal unusually high diversity of infectious haematopoietic necrosis virus in rainbow trout aquaculture J Gen Virol 81 2823 2832 PubMed Wolf, K 1988 Infectious hematopoietic necrosis Wolf, eds. Fish viruses and fish viral diseases Cornell University Press Ithaca, New York 83 114 Yoshimizu, M 1996 Disease problems of salmonid fish in Japan caused by international trade Rev Sci Tech Off Int Epiz 15 533 549