CFTR (ABCC7) is a hydrolyzable-ligand-gated channel
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- Aleksandrov, A.A., Aleksandrov, L.A. & Riordan, J.R. Pflugers Arch - Eur J Physiol (2007) 453: 693. doi:10.1007/s00424-006-0140-z
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As the product of the gene mutated in cystic fibrosis, the most common genetic disease of Caucasians, CFTR is an atypical ABC protein. From an evolutionary perspective, it is apparently a relatively young member of the ABC family, present only in metazoans where it plays a critical role in epithelial salt and fluid homeostasis. Functionally, the membrane translocation process it mediates, the passive bidirectional diffusion of small inorganic anions, is simpler than the vectorial transport of larger more complex substrates (“allocrites”) by most ABC transporters. However, the control of the permeation pathway which cannot go unchecked is necessarily more stringent than in the case of the transporters. There is tight regulation by the phosphorylation/dephosphorylation of the unique CFTR R domain superimposed on the basic ABC regulation mode of ATP binding and hydrolysis at the dual nucleotide binding sites. As with other ABCC subfamily members, only the second of these sites is hydrolytic in CFTR. The phosphorylation and ATP binding/hydrolysis events do not strongly influence each other; rather, R domain phosphorylation appears to enable transduction of the nucleotide binding allosteric signal to the responding channel gate. ATP hydrolysis is not required for either the opening or closing gating transitions but efficiently clears the ligand-binding site enabling a new gating cycle to be initiated.
KeywordsCystic fibrosisCFTRPhosphorylationATP bindingATP hydrolysis
Among the very large number of ABC proteins now recognized at least at the sequence level, CFTR is distinct as the only one known to be an ion channel. It has not been found in organisms more primitive than elasmobranchs, amphibia, and teleosts where as a chloride channel it plays an important role in salt transport as it does in the respiratory, intestinal, and other epithelial tissues of mammals. Its ion channel function provides the unique opportunity to analyze structure–function relationships of an ABC protein at the single molecule level. These single channel studies combined with population-based biochemical assays of nucleotide binding and hydrolysis reveal that CFTR acts as a hydrolyzable-ligand-gated channel in which the two processes, binding of the ATP ligand and channel gating are allosterically coupled. Hydrolysis of the ligand is not essential to either channel opening or closing transitions per se but enables repeated cycles of gating to occur.
As an ion channel activated by the binding of a readily available cytoplasmic ligand whose concentration does not undergo large or rapid changes, an additional level of control is required to preclude a continuously active state. This control is provided by the phosphorylation state of the R domain: transduction of the conformational signal elicited by ATP binding does not occur unless serines in the R domain are phosphorylated by protein kinase A.
CF is the most frequently occurring genetic disease in Caucasian populations and occurs less frequently in other races. Although disease manifestations reflect environmental factors and modifier genes, the primary cause of the disease is mutation of the CFTR gene which codes for an epithelial chloride channel. More than 1,400 different mutations in the CFTR gene have been detected in the screening of patients worldwide. Thus, the major impact of the discovery and study of the gene thus far is the ability to detect mutations in relatives of patients and pre- and post-natally, the latter having become the standard of care in many countries.
Major research efforts are now directed at developing methods to restore CFTR function in patients. Gene replacement therapy efforts have proven extremely challenging from many different perspectives and although progress has been made, significant efficacy has yet to be achieved. A second approach currently being intensively pursued is to overcome the misassembly and misprocessing of the ΔF508 mutant present in ∼90% of patients. Hence, while several hundred missense mutations that impair specific aspects of CFTR function including channel conductance, gating, and regulation have been identified in patients, a primary focus is on ΔF508 because of its prevalence. Deletion of the codon for Phe 508 in NBD1 prevents the polypeptide from achieving a native global conformation . It is polyubiquitinated and degraded by the proteosome at the ER . There is little accumulation of the misassembled polypeptide. Thus, as accurately stated by Cheng, et al.  when they first observed this behavior on heterologous expression of ΔF508 CFTR cDNA, “most cystic fibrosis is caused by CFTR misfolding”. Studies of the biosynthetic assembly of wild-type CFTR, although not the subject of this article have helped provide insight into its structure and function . For example, low open probability channel activity occurs in the complete absence of NBD2, indicating that it is not required for channel formation or gating transitions per se (Cui et al., submitted). However, when NBD2 is present either in the full-length protein or when coexpressed with ΔNBD2 the ATP hydrolysis, to which it contributes, enables repeated cycles of gating.
CFTR as ion channel and enzyme
When the CFTR gene was identified by positional cloning [63, 64] defective epithelial ion conductance in cystic fibrosis was already known [39, 51]. However, because the sequence of CFTR revealed that it was a member of what came to be known as the ABC family of ATP-dependent membrane transporters, it was not obvious that it coded for the channel responsible for the defective conductance although this possibility was considered . Due to its apparent relationship to transport ATPases, it was postulated to employ a unique mode of gating which is not in thermodynamic equilibrium but is driven by ATP hydrolysis . This would make the CFTR channel distinct from all known ligand- and voltage-gated channels in which ligand binding or an electrical field changes the structural configuration of the close state, allowing thermally driven gating transitions to occur. The idea of ATPase-driven CFTR gating was extended elaborately with proposals that hydrolysis at one NBD controls opening and hydrolysis at the other, closing [21, 34, 82]. Coupling between hydrolysis and gating was suggested to be direct such that individual hydrolytic events could be followed in real time by monitoring channel gating [8, 25]. These interpretations, requiring an energy transduction pathway based on an unknown physical principle, were made solely on the basis of the effects of different nucleotides on the chloride ion channel activity of wild type and mutant CFTR. Both NBDs were assumed to be sites of ATP hydrolysis similar to the situation in the P-glycoprotein multidrug transporter . We found that only one of the two ATP binding sites in the protein was hydrolytic  and this has been incorporated into more up-to-date models of CFTR function .
Nucleotide binding and hydrolysis by CFTR
Photolabeling of CFTR with [α-32P] 8-N3ATP
CFTR binds ATP
NBD2 fusion proteins bind TNP-ATP and hydrolyze ATP
NBD2 has ATPase activity (and adenylate kinase)
NBD1 fusion protein hydrolyzes ATP
CFTR hydrolyses ATP
Purified CFTR hydrolyses ATP
CFTR hydrolyses ATP
[α-32P]8-N3ATP photolabeling vanadate independent at NBD1, dependent at NBD2
NBDs have different ATPase activities
Mutation of either Walker A lysine reduces ATPase to very low level
Hydrolysis dependent on two intact NBDs
NBD1 photolabeling stable; NBD2, transient
Nonhydrolyzable AMP-PNP acts on NBD1
ATP hydrolysis occurs primarily at NBD2
NBD1 is a stable nucleotide binding site, NBD2 a hydrolytic site
CFTR has intrinsic adenylate kinase activity
Adenylate kinase activity supports channel function
CFTR gating is not dependent on the “energy of ATP hydrolysis”
This issue is largely due to the use of an antiquated terminology that has no basis in fact. It has long been realized that ATPase-driven mechanical work in molecular motors and transport systems does not derive energy from hydrolysis of the β-γ phosphate chemical bond. Rather, there is a conformation change on relaxation of the strained structure of the catalytic site that has been caused by ATP binding. Thus, there is structural rather than energetic coupling. The energy of a covalent chemical bond may be transformed only to another chemical bond or heat. The chemical bond between β and γ phosphates of ATP does not have any unique properties. As pointed out by Smith et al.  in structural studies of another ABC protein, the energy of ATP binding ultimately drives the overall hydrolytic cycle. This mechanism is analogous to the “binding change” mechanism of ATP synthetase proposed by Boyer . These considerations are important in interpreting the influence of nucleotide interactions with CFTR on channel gating.
Although ATP is employed to do mechanical work in diverse macromolecular systems, this is achieved by the conformational differences between ATP or ADP bound and unbound states of proteins and not from the energy of a chemical bond. In this so-called “entropy engine” the energy of the cleaved covalent chemical bond just sets the upper limit of the elastic energy available from the strained structure. Hydrolysis itself is a power switch rather than a power source. This is a crucial point that distinguishes our understanding from the “demon” mechanism proposed for ABC transporters by Hopfer  where information (entropy difference) is derived from the chemical reaction of ATP hydrolysis via an unknown mechanism different from the conventional heat engine. In our interpretation, based on the ability of nonhydrolyzable nucleotide analogs to gate CFTR channels , the ligand binding energy is utilized rather than the energy of the chemical bond. Thus, it is unnecessary to invoke an unknown physical phenomenon or “demon”.
Is there thermal nonequilibrium in CFTR channel gating?
Nucleotide regulation of CFTR channel activity
Only hydrolyzable nucleotides support channel gating
ATP hydrolysis is necessary for channel gating
AMP-PNP supports channel activity in presence of 0.5 mM ATP
ATP hydrolysis not essential for gating
Vanadate does not inhibit channel opening but inhibits closing
Free energy of hydrolysis drives gating
AMP-PNP does not support opening but inhibits closing at room temperature
ATP hydrolysis at one NBD controls opening, the other, closing
ATP activation of gating noncooperative
Activation by nucleotide occurs at a single site
ATP-dependent gating not influenced by poorly hydrolyzable analogues at +37°C
Binding site sensitive to phosphate chain configuration
NBD1 mutations reduce frequency of openings, NBD2 mutations prolong open state
ATP hydrolysis at NBD1 initiates activity; at NBD2 terminates
Q10 opening=9.6, Q10 closing=3.6
Opening more temp sensitive than closing
2 apparent open conductance states and NBD2 mutations prolong opening
Gating not in thermal equilibrium and NBD2 main controller of gating
Ea opening ∼100 kJ/mol, closing ∼10 kJ/mol
Gating is in thermal equilibrium
ATP minus divalent cation or AMP-PNP support gating
Hydrolysis is not essential for gating
Nonhydrolyzable nucleotides support opening and prolong closing
Hydrolysis is not essential for gating
NBD2 hydrolytic base mutant (E1371) locks channel in open state
Hydrolysis accelerates closing
Functionally compensatory mutations in NBD1 signature and NBD2 Walker A
NBD dimerization provides transition state for channel opening
Although it has been suggested that this conclusion was based on the analysis of different transitions than those used by other investigators , this is not the case. In fact, analysis of burst duration as mean open time under conditions where any events faster than 80 ms were not counted revealed a value of 260 ms at room temperature . In another laboratory, burst analysis with extended bandwidth revealed a burst duration of 267 ms at room temperature . In both these cases, the values are closer to the value of 220 ms we reported as a mean open time  than to the values, determined at room temperature, of 1,210 ms by Mathews et al.  or 896 ms by Csanady et al. . It is interesting to note that in both the latter papers, high PKA concentrations of 200–300 nM were used (compare with 100 U/ml = 45 nM PKA accompanied by 0.3 mM phosphate used by Aleksandrov and Riordan . The burst duration returned to the common value of 260 ms after PKA wash out . One might speculate that these differences could relate to the high phosphate concentration typically used in the stock PKA buffer solution and known to affect CFTR ion channel gating. Importantly, our mean open and closed times when determined at 35°C rather than room temperature were virtually identical to those of Carson et al.  and similar to those of Mathews et al. . As a result, the slope of the Arrhenius plot of the closing rate observed by Aleksandrov and Riordan  would be underestimated by 15%, but even with this taken into account, the slope is much less steep than that of Mathews et al. . Thus, there does not appear to be any published data which legitimately disputes the demonstration of thermal equilibrium between the open and closed states of the CFTR channel.
ATP hydrolysis is not essential for either channel opening or closing
Although it had been claimed that ATP hydrolysis is essential for channel opening [22, 71], there is now ample evidence this is not the case [2, 36, 79]. It is interesting to note that the evidence for a nonhydrolytic mode of CFTR channel gating comes from experiments using the same “nonhydrolytic conditions”, i.e., nonhydrolyzable analogues and divalent cation-free solutions, as were earlier employed to argue the opposite and in at least two cases by the same laboratories , emphasizing that opening is slower under nonhydrolytic than hydrolytic conditions. However, this kinetic difference does not change the fact that gating occurs in the absence of hydrolysis and hence is not dependent upon it. Diminution by an order of magnitude in opening frequency in any case would reflect only a 2.3 RT or ∼5.8 kJ/mol change in the energetic barrier to be overcome.
CFTR is a hydrolyzable-ligand-gated channel
Because ATP hydrolysis appears not to be essential for either CFTR channel opening or closing, what is the role of ATP hydrolysis by the protein? We postulate that it provides an efficient means of getting rid of the ligand whose binding is responsible for the initiation of gating. The closest analogy would be with cyclic nucleotide-activated channels where the ligands are also cytoplasmic nucleotides . These behave as classic ligand-gated channels, even though they have adopted a voltage-gated channel structural motif, responding to the binding and dissociation of the ligand depending on its bulk concentration. Regulation is at the level of these concentrations determined by the activities of cyclases and phosphodiesterases which are in turn controlled by upstream signals. Cellular ATP is not regulated in this acute fashion so that drastic decreases in concentration required for its dissociation from binding sites is not a sufficient means of terminating its impact. Hydrolysis at the second ATP binding site of CFTR provides this efficiency. While dissociation of unhydrolyzed ATP can allow termination of gating under nonhydrolytic conditions, ADP produced under hydrolytic conditions dissociates much more rapidly . In this view, the novel feature of CFTR as a ligand-gated channel is its ability to change the ligand chemical structure to promote dissociation from the binding site. This interpretation is consistent with the fact that specificity of binding and activation by the ligand is primarily in the geometry of phosphate moiety; there is a very strong preference for purine nucleoside triphosphates that can be hydrolyzed at the site responsible for channel activation. Changes in bond angles in the phosphate chain result in less binding and less effective activation.
To underline the ability of CFTR to bind and hydrolyze ATP independently of channel gating status, we place both CFTR (ATP,ATP) and CFTR*(ATP,ATP) states in a common box connected to CFTR (ATP,ADP) by the same pathway. In the hypothetical time course of gating shown in the upper part of Fig. 1, the initial configuration corresponds to the closed state before both nucleotide binding sites bind MgATP followed by the fitting of their structures to the tightly bound ligand which sends a conformational signal for channel opening through a pathway involving the phosphorylated R domain. The channel adopts the open state after the CFTR*(ATP,ATP) structure becomes available. The burst-like behavior is a result of short-lived structural disruption in the signal transduction pathway. After ATP hydrolysis at site II, the channel switches to a long-lived closed state. The channel remains closed until a new ATP molecule is bound at that site restoring the activated CFTR*(ATP,ATP) structure. This is the so-called hydrolytic pathway.
The long-lived closed state may result not only from ATP hydrolysis but also from incorrect orientation of the ligand in the binding site or its complete dissociation as well as from disruption of the signal transduction pathway. This was observed with nonhydrolyzable analogs and termed the nonhydrolytic pathway . Only two hydrolytic closings of a total of six burst terminations are shown in the Fig. 1. While only a hypothetical example of the loose correlation between burst termination and ATP hydrolysis, it provides a reasonable way to explain all available experimental data.
On the basis of these and other considerations, CFTR can be classified as a ligand-gated channel. Its only peculiarity as such is its inherent ability to rid itself of the ligand. The hydrolytic transformation of the ligand in at least one of its binding sites provides an even more effective termination than a reduction in bulk ligand concentration which is required in the case of other ligand gated channels.
Role of the “nucleotide-sandwich”
At low resolution, the 3D structure of CFTR is similar to that of other ABC proteins that are membrane transporters rather than ion channels . The high-resolution structure of the first nucleotide-binding domain [42, 43] indicates that it shares the same fold as NBDs of other ABC proteins. NBD1 and NBD2 are quite dissimilar at the sequence and functional levels and the structure of NBD2 has not yet been determined. However, important advances in the understanding of other members of the large ABC family in the past few years have indicated that their two NBDs closely associate forming two composite ATP binding sites at the interface between them rather than each NBD forming a separate site [47, 72]. CFTR site I is formed primarily by the Walker A sequence motif of NBD1 and ABC signature motif of NBD2 and is a nonhydrolytic stable ATP binding site, whereas site II formed by the Walker A motif of NBD2 and the signature of NBD1 hydrolyses the ATP bound there [4, 7]. This asymmetry in the NBDs apparently is not specifically related to the ion channel function of CFTR as it also occurs in other members of the human ABCC subfamily which are transporters.
Conformational movements within and between the two NBDs when ATP is bound and hydrolyzed probably contribute to the transport function of ABC transporters , and it has recently been suggested that these movements contribute to CFTR channel opening . These investigators observed compensatory influences of mutations of a specific pair of resides in the signature sequence of NBD1 and the Walker A motif of NBD2 and concluded that ATP-mediated dimerization of the two domains promotes the transition state for channel opening. It does seem very likely that ATP binding at site II of CFTR may tighten the association between the domains already fostered by the stably bound nucleotide at site I.
However, the particular application of so-called double mutant-cycle analysis, which Vergani et al.  employed using gating rate constants to evaluate activation energies for the overall gating process, may be questioned. The basic assumptions established for Eyring rate theory are not valid for such a multistep process. Dimer formation may be one of several configuration changes which occurs in the closed state but the relation of the activation energy of dimer formation and the effective Ea derived from the rate constant of channel opening is not known. In addition to these theoretical concerns, it is noted that the effect of the NBD1 signature mutation, R555K on the rate of opening is quite different from that reported previously by Teem et al.  and as measured in our laboratory. In both latter cases, the mutation significantly reduced the channel closing rate without influencing the opening rate whereas Vergani et al.  observe just the opposite, with this slowing of opening used as the foundation of their entire analysis. Furthermore, gating transitions are clearly not directly controlled by NBD dimer formation and dissociation because they occur, albeit at low frequency, in the complete absence of NBD2 (Cui et al., submitted). Thus, while a generally common molecular mechanism involving ATP interactions at their binding sites at the interface between NBDs may modulate the transmembrane permeability pathways in ABC transporters and the CFTR anion channel, the specific intramolecular steps involved remain to be elucidated.
CFTR control by phosphorylation
Apparently unique to CFTR among ABC proteins, there is an additional level of control by phosphorylation and dephosphorylation which enables it to be dynamically regulated by conditions that change levels of cellular cAMP and hence PKA activity [16, 22, 69]. Modulation by phosphorylation which is common to many other ion channels, both ligand- and voltage-gated, is rather absolute in the case of CFTR  and may be required for propagation of the conformational impact of ligand binding to the pore. Patch-clamp studies with CF epithelial cells in the 1980s before the discovery of CFTR indicated a defective cAMP-stimulated anion current [35, 66] and the CFTR sequence later revealed the presence of a large cluster of consensus sites for phosphorylation by cAMP-dependent protein kinase A in the R domain . Extensive studies have confirmed that the phosphorylation state of these sites strictly controls the activity of the CFTR chloride channel [12, 48]. This control is superimposed on the regulation of channel gating by ATP binding and hydrolysis at the NBDs [3, 6] and is essential to keep the channel from gating continuously. When the chloride permeation pathway is not required for salt secretion or reabsorption, phosphatase activity maintains CFTR in an unphosphorylated and inactive state . When chloride permeability is required, agonists that increase cAMP elevate PKA activity which phosphorylates R domain sites enabling ATP-dependent channel gating.
This stringent control by phosphorylation/dephosphorylation is absolutely necessary to the utilization of the ABC transporter structural architecture as an ion channel. The transporters utilize available cytoplasmic ATP to transport their substrates depending on availability and do not require further control. Ion channels, on the other hand, cannot serve useful functions unless their gating can be turned on and off. This is achieved either by conformational responses to changes in membrane potential (voltage-gated) or ligand binding (ligand-gated). In general, ligand-gated channels sense changes in ligand concentrations whereas the cytoplasmic concentration of the CFTR-activating ligand, ATP remains relatively constant within the low millimolar range. Therefore, without an additional level of control, the CFTR channel would always be active. The R domain which appears to be unique not only within the large ABC protein family but among all sequences known thus far provides a “phosphorylation control module”.
The fact that this module contains a string of sites for phosphorylation by PKA that is highly conserved among species would seem to emphasize their importance to the molecule’s function. The mechanism whereby gating is enabled when the R domain is phosphorylated and not when it is unphosphorylated is not well understood despite extensive investigations [45, 76]. Both the introduction of negative charges by the phosphoryl groups  and conformation changes  play some role. The unphosphorylated R domain has an inhibitory action that is relieved on phosphorylation but the phosphorylated domain has been reported to also have a positive stimulating effect . Interpretation of how the multiple sites are employed in permitting channel gating remains far from clear. Mutagenesis of sites individually and in sets has provided certain insights, with removal of some sites having greater impact than others [12, 16]. We found it necessary to remove a total of 15 sites to render the channel unresponsive to PKA (70). At least two of the sites have been reported to have inhibitory effects on channel activity [18, 76, 81].
Protein kinase C also plays a role in CFTR activation , primarily in the case of the human protein, by enhancing the response to PKA . This seems to occur without elevating or accelerating phosphorylation by PKA . Strikingly, introduction of a particularly significant R domain PKC site of Xenopus CFTR into the human channel rendered it directly responsive to activation by PKC alone when expressed in Xenopus oocytes . All mechanistic studies of CFTR activation by phosphorylation have necessarily been done in model heterologous expression systems and it is assumed that similar mechanisms apply in situ in tissues where CFTR function is crucial. CFTR activation in the intestine and airways is elicited by agonists that increase cellular cyclic nucleotides and in excised membrane patches in cell lines derived from these tissues by direct application of PKA .
From this large overall body of evidence, it would appear that CFTR evolved to be controlled primarily by phosphorylation/dephosphorylation in response to humoral agonists acting through cyclic nucleotides and their dependent kinases. It must be pointed out that there also are reports of CFTR activation by nonphosphorylation-dependent mechanisms. In one of the most physiologically relevant experimental systems, the perfused isolated sweat duct, GTPγS-stimulated chloride conductance leading to the suggestion that heterotrimeric G proteins may be able to directly activate CFTR [58, 60]. Although this activation was blocked by the general protein kinase inhibitor, staurosporine, it was thought not to be due to PKA because there was no accumulation of cAMP in these GTPγS-stimulated permeabilized ducts nor did adenylate cyclase inhibitors prevent the activation. However, the stimulatory effects of added cAMP and GTPγS were not additive indicating that they were convergent at some point. While several G proteins localized to the apical membrane of the sweat duct cells, it was not clear which might be involved. In the apical membrane of airway epithelial cells Gs couples activated adenosine A2b receptors to adenylate cyclase producing cAMP to stimulate PKA which phosphorylates and activates CFTR . In the same cells, P2Y2 purinergic receptors coupled to phospholipase C via Gq may cause some activation of CFTR via a calcium-independent PKC activated by the diacyl glycerol released . However, because only slight CFTR activation occurs solely due to PKC , it is not certain if the purinergic activation occurs entirely independently of PKA. Also, although both of these experimental systems, the sweat ducts and the airway cells, are of the utmost relevance to cystic fibrosis, the measurements of transepithelial currents are quite indirect measures of CFTR. Other reports of PKA-independent CFTR activation include the effects of dATP , PIP2 , and glutamate . Although of interest mechanistically, the dATP effect is almost certainly nonphysiological while changes in cellular PIP2 concentrations do occur. In none of these latter cases were measurements of the phosphorylation state of the protein made. It is possible that some of the important R domain PKA sites may have become phosphorylated due to inhibition of a phosphatase that normally maintains the unphosphorylated state.
CFTR provides a novel intersection of the ion channel and ABC transporter fields, faithfully obeying the principals while expanding the horizons of each.
Research results from our laboratory discussed in this report were supported by the NIH and CFF.