Identification and validation of phospho-SRC, a novel and potential pharmacodynamic biomarker for dasatinib (SPRYCEL™), a multi-targeted kinase inhibitor
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- Luo, F.., Barrett, Y.C., Yang, Z. et al. Cancer Chemother Pharmacol (2008) 62: 1065. doi:10.1007/s00280-008-0699-5
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Dasatinib (BMS-354825) is a potent, oral multi-targeted kinase inhibitor. It is an effective therapy for patients with imatinib-resistant or -intolerant Ph+ leukemias,. It has demonstrated promising preclinical anti-tumor activity, and is under clinical evaluation in solid tumors. To support the clinical development of dasatinib, we identified a pharmacodynamic biomarker to assess in vivo SRC kinase inhibition, with subsequent evaluation in cancer patients.
The biomarker, phosphorylated SRC (phospho-SRC), was first identified in human prostate PC-3 tumor cells and peripheral blood mononuclear cells (PBMCs) in vitro. It was further assessed in nude mice bearing PC-3 xenografts. Phospho-SRC[pY418] in tumors and PBMC were measured by western blot analysis, and were quantified by ELISA assays. Dasatinib plasma concentrations were determined using LC/MS/MS.
In PC-3 cells, dasatinib showed dose-dependent anti-proliferative effect, which correlated with the inhibition of phospho-SRC[pY418] and of SRC kinase activity. With a single oral dose of 50 or 15 mg/kg, tumoral phospho-SRC[pY418] was maximally inhibited at 3 h, partially reversed between 7 and 17 h, and completely recovered after 24 h post dose. At 5 mg/kg, tumoral phospho-SRC[pY418] inhibition was less pronounced and recovered more rapidly to baseline level within 24h. Dasatinib (1 mg/kg) resulted in little inhibition. In PBMCs, a similar time course and extent of phospho-SRC[pY418] inhibition was observed. Inhibition of phospho-SRC[pY418] in vivo appeared to correlate with the preclinical in vivo efficacy and PK profiles of dasatinib in mice.
Phospho-SRC[pY418] may potentially be used as a biomarker to enable assessment of target inhibition in clinical studies exploring dasatinib antitumor activity.
SRC family kinases are non-receptor intracellular tyrosine kinases that mediate a variety of cellular signaling pathways . SRC kinases are overexpressed in many common tumor types, including colon [2, 3], lung , ovarian [5, 6], prostate , and pancreatic  cancers. Dysregulation of SRC function has been strongly linked to the pathogenesis of human cancers . SRC activity is essential for the stimulation of DNA synthesis, G1 to S phase transition, and proliferation in response to growth factors, such as platelet-derived growth factor (PDGF) [10, 11]. Tumor cells with heightened metastatic potential show higher SRC kinase activity than poorly metastatic cells; mutations in a critical carboxy-terminal tyrosine regulatory region of SRC lead to SRC activation and increased metastasis [11, 12]. SRC family kinases also mediate signaling from many receptor tyrosine kinases, including EGFR, VEGFR, PDGFR, and c-Met [12–14]. Interference of SRC activity leads to mitotic blockade . Therefore, strategies designed to target SRC kinases and other kinase-mediated signaling pathways, either alone or in combination with chemotherapy, could be effective against primary tumor growth as well as metastasis.
Dasatinib is a novel, oral multi-targeted inhibitor of kinases including SRC family kinases. Dasatinib is highly potent, with a biochemical IC50 of 0.8 nM for SRC kinase [16, 17]. It has demonstrated in vivo anti-tumor activity in several human tumor xenograft models [16, 17] and is currently being evaluated in phase I/II trials in a variety of treatment-refractory solid tumors, and has recently received regulatory approval for the treatment of imatinib-resistant CML [16–19]. A common goal of early-phase clinical trials of novel, molecularly targeted agents, such as dasatinib and sunitinib malate, is to provide the proof of concept. To ensure optimal clinical development of these agents, it is critical to prove drug targeting, to determine the extent and duration of target inhibition, and to identify the optimal dose and regimen. Furthermore, it is essential to confirm that modulation of the target correlates with the predicted pharmacological effects (tumor stasis, disease stabilization, and/or tumor reduction). Rigorous determination of the pharmacokinetic (PK) and pharmacodynamic (PD) biomarker relationship drives preclinical efficacy and safety, and subsequent translation of these findings to the clinic streamlines the clinical development process [20–23].
It has been demonstrated that autophosphorylation of tyrosine 418 in the catalytic domain of SRC is required for activation of SRC kinase activity, while dephosphorylation of phosphotyrosine 418 inhibits SRC kinase activity . In a tumor array of 60 human colon carcinomas, 84% of carcinomas had detectable levels of phospho-SRC Tyr418 expression levels . Therefore, phospho-SRC[pY418] may provide a useful marker for inhibition of Src activity in tumors and was evaluated as a potential PD biomarker to assess SRC kinase inhibition by dasatinib in the present study. Specifically, we conducted a series of preclinical studies designed to: (a) evaluate the correlation between the proposed PD biomarker and the target inhibition and antiproliferative effects of dasatinib; (b) determine the efficacious oral exposure range of dasatinib in vivo in a preclinical tumor model; (c) assess the relationship between a PK/PD biomarker and anti-tumor activity, i.e. the in vivo modulation of SRC kinase activity in both tumor and surrogate tissue PBMC at efficacious and inactive doses; (d) explore the utility of phospho-SRC as a PD biomarker to assess in vivo target exposure in patients.
Materials and methods
Chemical reagents and antibodies
Complete protease inhibitor tablets were acquired from Roche Diagnostics (Indianapolis, IN, USA). MicroBCA reagents were from Pierce (Rockford, IL, USA). Rabbit polyclonal anti-phospho-SRC[pY418] antibody and anti-phospho-cortactin[pY421] antibody were purchased from Biosource International Inc. (Camarillo, CA, USA). Mouse monoclonal anti-SRC antibody and anti-cortactin antibody were purchased from Upstate Biotechnology (Lake Placid, NY, USA). Anti-rabbit-IgG and anti-mouse-IgG antibodies conjugated with horseradish peroxidase (HRP) were purchased from BD Bioscience (Lexington, KY, USA). Unless otherwise specified, all other chemicals and reagents were from Sigma (St Louis, MO, USA). Sterile buffers and solutions were obtained from GIBCO/BRL (Carlsbad, CA, USA). Sterile tissue culture ware was obtained from Fisher Scientific Co. (Hanover Park, IL, USA). Cell Preparation Tube™ (CPT) was from BD Biosciences (Franklin Lake, NJ, USA).
Female nude mice, 5–6 weeks of age, were obtained from Harlan Sprague-Dawley Co. (Indianapolis, IN, USA) and maintained in an ammonia-free environment in a defined and pathogen-free colony. Animals were quarantined for approximately 3 weeks prior to their use for tumor propagation and drug efficacy testing. They were fed food and water ad libitum. All studies were performed in accordance with the regulations of the Animal Care and Use Committee of Bristol–Myers Squibb (BMS) and the American Association for Accreditation of Laboratory Animal Care (AAALAC).
Drug formulation and administration
For oral and intravenous (i.v.) administration, dasatinib was dissolved in a mixture of propylene glycol/water (50:50). The volume of administration was 0.01 mL/g for mice.
In vitro analysis of antiproliferative effects
Cell proliferation assays were conducted in 6-well culture plates. Cells were plated at a density of 1 × 104 cells/well, cultured in RPMI-1640 medium supplemented with 10% fetal bovine serum for 24 h, and then treated with various concentrations of dasatinib for 72 h. Every 24 h, cell growth was determined by counting cell number using a Coulter Channelyzer (Beckman Coulter, Miami, FL). IC50 values were then calculated using XLFit software. The highest concentration of DMSO (drug diluent) added to the cells had no effect on cell proliferation.
In vitro analysis of phospho-SRC inhibition
For phospho-SRC in tumor cells, PC-3 cells were cultured in the same conditions as in proliferation assay and were treated in culture medium containing drug for 1 h at 37°C. Cells were then lysed in ice-cold radio-immunoprecipitation assay (RIPA) buffer containing protease and phosphatase inhibitor cocktails. For phospho-SRC in human PBMCs, drug was spiked in 1 mL of fresh blood collected from apparently healthy donors after proper consent and incubated for 1 h at 37°C. PBMCs were then isolated according to a modified protocol. In brief, the blood was mixed with an equal volume of ice-cold PBS before being laid on top of an equal volume of lymphocyte separation medium (LSM). The layer of PBMCs formed by centrifugation at 400×g at 4°C for 10 min was aspirated. PBMCs were immediately lysed in the buffer containing phosphotase and protease inhibitors and stored in liquid N2 until further analysis by western and/or ELISA for phospho-SRC. Alternatively, a one-step CPT method was used for isolation of PBMC. Briefly, blood was either drawn or placed into CPT tubes. The tubes were centrifuged for 30 min at 1,700×g. Carefully discard the plasma (upper half of the tube, clear solution). Transfer the remaining solution containing monocyte and lymphocyte to a different tube then wash with PBS three times. Harvest the PBMC pellet after centrifuging the solution for 15 min at 300×g, 4°C.
In vivo efficacy testing
Pharmacokinetics in mice
To characterize the PK parameters of dasatinib, mice (n = 3 per time point) were given a single i.v. (5 mg/kg) or p.o. (1, 5, 15, or 50 mg/kg) dose, and were bled by cardiac puncture 0, 0.08, 0.25, 1, 3, 6, and 24 h (i.v. dosing) or 0, 0.5, 1, 3, 7, 17, and 24 h (p.o. dosing) after treatment. Blood was centrifuged immediately; plasma was collected and frozen at −80°C until analysis by high-performance liquid chromatography/mass spectrometry (LC/MS/MS). In brief, plasma samples were de-proteinized with acetonitrile, the supernatant was analyzed by LC/MS/MS. The HPLC column was a C18-ODS3 column (2 mm × 50 mm, 3 μM particles) (Torrance, CA) maintained at 60°C with a flow rate of 0.5 mL/min. The mobile phase consisted of 5 mM ammonium formate pH 3.75 (A) and acetonitrile (B). The initial mobile phase composition was 87.5% A/12.5% B. After sample injection, the mobile phase was changed to 37.5% A/62.5% B over 2 min, and was held at that composition for 1.5 min. The HPLC was interfaced to a Finnigan LCQ Advantage (Thermo Electron Corp, San Jose, CA, USA) ion-trap mass spectrometer operated in the positive ion electrospray and full MS/MS mode. The standard curve ranged from 2 to 5,000 ng/mL and was fitted with a quadratic regression weighted by reciprocal concentration (1/x). The limit of quantitation (LOQ) for the purposes of this assay was 2 ng/mL.
Pharmacokinetics data analysis was performed by the noncompartmental method using Kinetica (v4.0.2, InnaPhase Corporation, Philadelphia, PA, USA). The maximum plasma concentration (Cmax) and the time to reach Cmax (Tmax) were determined by visually inspecting the profiles of plasma drug concentration versus time. The area under the plasma drug concentration curve (AUC) was estimated by the trapezoidal rule.
Pharmacodynamics in mice
Pharmacodynamics studies were conducted in mice bearing PC-3 human prostate tumors (150–250 mg). Following a single oral administration of dasatinib at 1, 5, 15, or 50 mg/kg, tumors were surgically removed at 0, 0.5, 1, 3, 7, 17, and 24 h and were immediately snap-frozen in liquid nitrogen and stored at −80°C. Prior to analysis, frozen tumor tissues were ground into powder under −80°C and then lysed in ice-cold radio-immunoprecipitation assay buffer containing protease and phosphatase inhibitor cocktails. In the same experiment, blood was sampled at the same time points and PBMCs were isolated and lysed according to the same procedure described in the section of “In vitro analysis of phospho-SRC inhibition” for further analysis of phospho-SRC.
Western blot analysis of phospho-SRC[pY418] and phospho-cortactin[pY421]
The total protein concentration of either tumor or PBMC lysate was determined using the MicroBCA method (Pierce, Rockford, IL, USA). The denatured lysate was further resolved on 12% SDS-PAGE gels and transferred to Immobilon-P polyvinyl membrane (Millipore Corp, Bedford, MA, USA) at constant voltage at 4°C overnight. To detect the phospho-proteins, the membrane was incubated with a rabbit polyclonal anti-phospho-SRC[pY418] or anti-phospho-cortactin[pY421] antibody (1:1,000 dilution) for 30 min at 37°C, followed by incubation with 0.1 μg/mL of anti-rabbit-IgG antibody conjugated with HRP. To detect concentrations of total proteins, the same blot was stripped and blotted with mouse monoclonal anti-SRC or anti-cortactin antibody (1:1,000 dilution) followed by anti-mouse-IgG antibody conjugated with HRP (Millipore Corp, Bedford, MA, USA). Proteins were visualized with western blot chemiluminescence reagent ECL Plus (Amersham Pharmacia Biotech, Piscataway, NJ, USA) as directed by the manufacturer. The molecular sizes of the proteins were estimated by comparison with pre-stained protein precision markers (Bio-Rad Laboratories, Hercules, CA, USA).
Quantitation of phospho-SRC
Concentrations of phospho-SRC were quantitated by an ELISA assay, which was modified from the SRC[pY418] Immunoassay Kit from Biosource International Inc. (Camarillo, CA). In this method, an anti-SRC mouse monoclonal capture antibody was coated to wells of microtiter strips. Phospho-SRC in lysate binds to both the immobilized capture antibody and a rabbit polyclonal anti-SRC[pY418] secondary antibody to form a sandwich.The polyclonal secondary antibody is recognized by anti-rabbit-IgG antibody conjugated with HRP. HRP catalyzes the tetramethylbenzidine/H2O2 reaction and the color formation was measured at an absorbance of 450 nm using a SpectraMax plate reader, which is directly proportional to the concentration of phospho-SRC in the samples. The concentration of phospho-SRC was determined using a calibration curve, prepared in a 10% cell lysis buffer and fitted with a 4-Parameter equation [y = ((A − D)/(1 + (x/C)^B)) + D] in Softmax PRO 4.0. The standard curve range is 1.56–100 units/mL, with read back accuracy ranged from 98.3 to 103% and precision ranged from 2.2 to 10.6% CV (n = 6). The QC samples consisted of cell lysis buffer spiked with recombinant and platelet-derived phospho-SRC and a transfected colon cell line that expresses a significant amount of phospho-SRC. The within-day assay precision ranged from 3.2 to 19.8% CV (n = 6), while between-day assay variation ranged from 9.8 to 25.8% CV (n = 20). Lower limit of quantitation of the assay is 1.56 units/mL. Using this method, we have observed that phospho-Src in human PBMC (isolated from six different donors) is stable for up to 14 weeks when stored at either −80 or −192°C, enabling us to utilize this biomarker in clinical trials.
Correlation of tumor growth inhibition with phospho-SRC inhibition by dasatinib
Evaluation of phospho-SRC as a biomarker in mice bearing PC-3 human prostate tumor xenografts
The in vivo efficacy of dasatinib (1–50 mg/kg/dose BID × 14) has been fully evaluated in PC-3 tumors grown subcutaneously in nude mice . Dasatinib significantly delayed tumor growth (P < 0.05) and showed similar efficacy across the dose range 15–50 mg/kg/dose. Dasatinib was less efficacious at 5 mg/kg/dose and inactive at 1 mg/kg/dose. Therefore, dasatinib dose levels from 15 to 50 mg/kg/dose were considered to be within the efficacious range; 15 mg/kg/dose appeared to provide optimal antitumor activity in the PC-3 human prostate tumor model.
Pharmacokinetics of dasatinib in mice
Comparison of phospho-SRC inhibition between mouse and human PBMCs
Phospho-SRC was proposed as a biomarker to assess SRC kinase targeting based on in vitro observations in tumor cells in our laboratory as well as other investigator laboratory . It appeared that inhibition of tumoral phospho-SRC has a causal relationship with antiproliferative effect as well as inhibition of tumoral SRC kinase activity in PC-3 cells (Fig. 1). Similar relationship was also observed in several other tumor types, including colon and breast cancer, suggesting that phospho-SRC could be useful to assess SRC kinase inhibition in multiple solid tumor types which are usually seen in phase I dose escalation study. Furthermore, phospho-SRC inhibition in surrogate tissue PBMCs showed a similar relationship with inhibition of SRC kinase activity. These observations confirmed that phospho-SRC was an attractive biomarker candidate, warranting further in vivo evaluation in both preclinical models and cancer patients. Inhibition of phospho-SRC was subsequently evaluated in vivo in mice bearing PC-3 tumor xenografts at both efficacious and inactive doses (Fig. 2). Interestingly, the time course and extent of inhibition of phospho-SRC was similar between tumor and PBMCs, implying that measurement of phospho-SRC levels in PBMCs may provide information on tumoral phospho-SRC inhibition in the clinic. This is particularly relevant when phospho-SRC in PBMCs is used as a biomarker for clinical studies, in which availability of tumor biopsies is usually limited. When the biomarker response (inhibition of phospho-SRC) was compared with tumor growth inhibition by dasatinib, phospho-SRC levels in both tumors and PBMCs correlated well with the preclinical in vivo efficacy (Fig. 2d, e). This suggests that phospho-SRC, as a mechanism-based biomarker, may have the potential to correlate with the antitumor activity of dasatinib in cancer patients. This hypothesis is currently being tested in phase II trials.
It is of great interest and importance to evaluate if and how these preclinical observation can be translated into the clinical evaluation of dasatinib. The relationship between dasatinib pharmacokinetic exposures and the in vivo efficacy appears to be less direct and less robust than in in vitro models. A clear discrepancy has been observed between the systemic exposure and the antitumor activity of dasatinib, especially for high dose levels (Fig. 3b). This implies that the target (SRC kinase) may be completely inhibited at dose levels or exposures that are not sufficient to saturate the systemic clearance of dasatinib. Alternatively, clinical efficacy may not correlate with drug exposures, which is routinely determined in early-phase studies. Clinical scenarios are probably much more complicated than those observed in animal models. However, our study supports the notion that the optimal biological dose for molecularly targeted therapies can be better defined based on the mechanism-based biomarkers than the tolerability in phase 1 dose-escalation studies.
The emergence of small molecule tyrosine kinase inhibitors into clinical development presents the opportunity to optimize dosing and scheduling based on a desired level and duration of target inhibition (and subsequent biological effect) rather than more traditional identification of a maximum tolerated dose (MTD) for chemotherapeutic agents. To adopt this approach, the PK/PD biomarker relationship linking target modulation and anti-tumor efficacy in preclinical tumor models must be elucidated to expedite clinical evaluation. Analysis of signal transduction pathways in tumors from xenograft models provides a useful approach to determine the kinetics and magnitude of target inhibition associated with biological response/efficacy, and the drug plasma concentrations needed to achieve this objective.
The present study provides evidence that phospho-SRC has the potential as a biomarker for assessing SRC targeting, which could provide a rapid proof of concept that dasatinib can inhibit SRC kinase when given to patients in early-phase studies. Extensive preclinical or translational PK/PD biomarker studies have been presented for several molecularly targeted therapies that have undergone clinical evaluation, including trastuzumab (Herceptin), gefitinib (Iressa), imatinib (Gleevec), and sunitinib malate (Sutent) [20, 31–35]. In all cases, biomarkers indicative of disease mechanisms effectively helped to address central issues, such as rapid proof of concept and selection of the optimal dose and regimen. The experience with those drugs helped developing the strategy for the clinical development of the novel SRC kinase inhibitor, dasatinib.
Biomarkers may be essential predictive factors to select patients for molecularly targeted therapy. The clinical benefit of trastuzumab is limited to patients whose tumors demonstrate amplification of HER2  and imatinib is effective only in patients with Ph+ CML . Careful selection of patient populations for early clinical studies of dasatinib may influence the likelihood of achieving proof of concept and will be critical in maximizing efficacy and tolerability. Identification of tumor types in which the target plays a pivotal role will also influence the successful application of targeted therapies [32, 34]. In addition, pharmacogenomic and proteomic profiling in different tumor types appears to be a promising approach to identifying gene or protein biomarkers predictive of responsive patient populations. We have discovered a set of gene and protein biomarkers predicting treatment response to dasatinib with a panel of sensitive and resistant tumors using pharmacogenomic and proteomic approaches . The validity of these biomarkers is currently being tested in clinical studies.
In summary, we believe that effective development of novel, molecularly targeted agents requires determination of the optimal clinical exposure and regimen for phase II/III studies using an array of biomarkers, including target exposure biomarkers and patient selection biomarkers, in combination with efficacy and safety profiles defined in phase I trials.
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