Biotechnologically Relevant Enzymes and Proteins

Applied Microbiology and Biotechnology

, Volume 89, Issue 3, pp 635-644

First online:

Cloning and characterization of a rhamnose isomerase from Bacillus halodurans

  • Ponnandy PrabhuAffiliated withDepartment of Bioscience and Biotechnology, Konkuk University
  • , Thanh Thi Ngoc DoanAffiliated withDepartment of Advanced Technology Fusion, Konkuk University
  • , Marimuthu JeyaAffiliated withDepartment of Chemical Engineering, Konkuk University
  • , Lin-Woo KangAffiliated withDepartment of Advanced Technology Fusion, Konkuk University Email author 
  • , Jung-Kul LeeAffiliated withDepartment of Chemical Engineering, Konkuk University Email author 

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Whole-genome sequence analysis of Bacillus halodurans ATCC BAA-125 revealed an isomerase gene (rhaA) encoding an l-rhamnose isomerase (l-RhI). The identified l -RhI gene was cloned from B. halodurans and over-expressed in Escherichia coli. DNA sequence analysis revealed an open reading frame of 1,257 bp capable of encoding a polypeptide of 418 amino acid residues with a molecular mass of 48,178 Da. The molecular mass of the purified enzyme was estimated to be ∼48 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and 121 kDa by gel filtration chromatography, suggesting that the enzyme is a homodimer. The enzyme had an optimal pH and temperature of 7 and 70°C, respectively, with a k cat of 8,971 min−1 and a k cat/K m of 17 min−1 mM−1 for l-rhamnose. Although l-RhIs have been characterized from several other sources, B. halodurans l-RhI is distinguished from other l-RhIs by its high temperature optimum (70°C) with high thermal stability of showing 100% activity for 10 h at 60°C. The half-life of the enzyme was more than 900 min and ∼25 min at 60°C and 70°C, respectively, making B. halodurans l-RhI a good choice for industrial applications. This work describes one of the most thermostable l-RhI characterized thus far.


Bacillus halodurans Characterization Rhamnose isomerase Thermostability