, Volume 65, Issue 1, pp 47–61

Evolution of the MHC-DQB exon 2 in marine and terrestrial mammals

  • María José Villanueva-Noriega
  • Charles Scott Baker
  • Luis Medrano-González
Original Paper

DOI: 10.1007/s00251-012-0647-8

Cite this article as:
Villanueva-Noriega, M.J., Baker, C.S. & Medrano-González, L. Immunogenetics (2013) 65: 47. doi:10.1007/s00251-012-0647-8


On the basis of a general low polymorphism, several studies suggest that balancing selection in the class II major histocompatibility complex (MHC) is weaker in marine mammals as compared with terrestrial mammals. We investigated such differential selection among Cetacea, Artiodactyla, and Primates at exon 2 of MHC-DQB gene by contrasting indicators of molecular evolution such as occurrence of transpecific polymorphisms, patterns of phylogenetic branch lengths by codon position, rates of nonsynonymous and synonymous substitutions as well as accumulation of variable sites on the sampling of alleles. These indicators were compared between the DQB and the mitochondrial cytochrome b gene (cytb) as a reference of neutral expectations and differences between molecular clocks resulting from life history and historical demography. All indicators showed that the influence of balancing selection on the DQB is more variable and overall weaker for cetaceans. In our sampling, ziphiids, the sperm whale, monodontids and the finless porpoise formed a group with lower DQB polymorphism, while mysticetes exhibited a higher DQB variation similar to that of terrestrial mammals as well as higher occurrence of transpecific polymorphisms. Different dolphins appeared in the two groups. Larger variation of selection on the cetacean DQB could be related to greater stochasticity in their historical demography and thus, to a greater complexity of the general ecology and disease processes of these animals.


Major histocompatibility complex DQB Cytochrome b Nonsynonymous nucleotide substitution Transpecific polymorphism Marine mammals 

Supplementary material

251_2012_647_MOESM1_ESM.xlsx (90 kb)
ESM 1(XLSX 89 kb)

Copyright information

© Springer-Verlag 2012

Authors and Affiliations

  • María José Villanueva-Noriega
    • 1
    • 3
  • Charles Scott Baker
    • 2
    • 4
  • Luis Medrano-González
    • 1
    • 2
  1. 1.Departamento de Biología Evolutiva, Facultad de CienciasUniversidad Nacional Autónoma de MéxicoMéxicoMéxico
  2. 2.School of Biological SciencesUniversity of AucklandAucklandNew Zealand
  3. 3.Posgrado en Ciencias del Mar y LimnologíaUniversidad Nacional Autónoma de MéxicoMéxicoMéxico
  4. 4.Marine Mammal InstituteOregon State UniversityNewportUSA

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