A comparison of electrophysiological properties of the CNGA1, CNGA1tandem and CNGA1cys-free Channels
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- Mazzolini, M., Nair, A.V. & Torre, V. Eur Biophys J (2008) 37: 947. doi:10.1007/s00249-008-0312-1
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Three constructs are used for the analysis of biophysical properties of CNGA1 channels: the WT CNGA1 channel, a CNGA1 channel where all endogenous cysteines were removed (CNGA1cys-free) and a construct composed of two CNGA1 subunits connected by a small linker (CNGA1tandem). So far, it has been assumed, but not proven, that the molecular structure of these ionic channels is almost identical. The I/V relations, ionic selectivity to alkali monovalent cations, blockage by tetracaine and TMA+ were not significantly different. The cGMP dose response and blockage by TEA+ and Cd2+ were instead significantly different in CNGA1 and CNGA1cys-free channels, but not in CNGA1 and CNGA1tandem channels. Cd2+ blocked irreversibly the mutant channel A406C in the absence of cGMP. By contrast, Cd2+ did not block the mutant channel A406C in the CNGA1cys-free background (A406Ccys-free), but an irreversible and almost complete blockage was observed in the presence of the cross-linker M–4–M. Results obtained with different MTS cross-linkers and reagents suggest that the 3D structure of the CNGA1cys-free differs from that of the CNGA1 channel and that the distance between homologous residues at position 406 in CNGA1cys-free is longer than in the WT CNGA1 by several Angstroms.
Cyclic nucleotide-binding domain
Cysteine scanning mutagenesis
2-(Trimethylammonium)ethyl] methanethiosulfonate bromide
3-(Trimethylammonium)propyl methanethiosulfonate bromide
3-(Triethylammonium)propyl methanthiosulfonate bromide
Cyclic nucleotide gated (CNG) channels mediate sensory transduction in photoreceptors and olfactory sensory neurons (Fesenko et al. 1985). In these cells, sensory transduction requires the binding of cyclic nucleotides (cGMP for photoreceptor and cAMP for olfactory receptor) to CNG channels in order for the latter to open (Craven and Zagotta 2006; Kaupp et al. 1989; Kaupp and Seifert 2002; Matulef and Zagotta 2003; Zagotta and Siegelbaum 1996). Native CNG channels are heterotetramers and have distinct subunits usually referred to as CNGA and CNGB (Bradley et al. 2001). Native CNG channels from bovine rod photoreceptors are composed of three CNGA1 and one CNGB1 subunits (Weitz et al. 2002; Zheng et al. 2002; Zhong et al. 2002). The CNGA1 subunit from bovine rod is composed of 690 amino acids encoding for a cyclic nucleotide-binding (CNB) domain composed of about 125 amino acids in the cytoplasmic C-terminal end (Biel et al. 1999; Zagotta and Siegelbaum 1996). The analysis of the amino acid sequence of the CNGA1 subunit indicates the existence of six transmembrane segments, usually referred to as S1, S2, S3, S4, S5 and S6 helices. Between the S5 and S6 helices there is a pore region, from Val348 to Pro367, that shows a significant sequence homology with the pore region of K+ channels (Becchetti et al. 1999; Liu and Siegelbaum 2000). The overall architecture places CNG channels in the superfamily of voltage-gated ionic channels, rather than in the superfamily of ligand gated channels (Jan and Jan 1990). Homotetrameric CNGA1 channels from bovine rods, when heterologously expressed in Xenopus leavis oocytes, give rise to functional channels with properties similar—but not identical—to those of native CNG channels (Kaupp et al. 1989).
In order to understand the relation between structure and function of ionic channels, residues were mutated and electrophysiological properties of mutant channels were investigated. A common strategy is to substitute native residues with exogenous cysteines and to analyze the effect of compounds known to react with the sulfur (S) atom of cysteines. This procedure usually known as cysteine scanning mutagenesis (CSM) (Akabas et al. 1992; Karlin and Akabas 1998) analyses the formation of S–S bridges, spontaneously occurring or induced by appropriate cross-linking reagents, such as copper phenanthroline, Cd2+ ions or MTS–MTS compounds (Glusker 1991; Hastrup et al. 2001; Loo and Clarke 2001; Ren et al. 2006). As native ionic channels have endogenous cysteines, it is not easy to distinguish between the formation of S–S bridges between a pair of exogenous cysteines and between exogenous and endogenous cysteines. This issue is particularly relevant in studies aiming at establishing distances between homologous residues. Matulef et al. (1999) have engineered a CNGA1 channel (CNGA1cys-free) where all endogenous cysteines were replaced with other residues not bearing an S atom. When exogenous cysteines are introduced in the CNGA1cys-free any effect mediated by agents reacting with thiol groups can be ascribed to exogenous cysteines.
Another very useful construct is the CNGA1tandem where two CNGA1 subunits are joined together by a small linker composed of some tens of residues (Flynn and Zagotta 2003; Matulef and Zagotta 2002; Rosenbaum and Gordon 2002; Rothberg et al. 2002). By introducing a mutation in only one subunit of the tandem it is possible to study the effect caused by the mutations in only two subunits out of the four composing the channel. In this way, a mutation that does not lead to functional channels when performed in all four subunits, may lead to functional channels when performed in only two subunits. This enabled an extensive CSM in the pore region of CNGA1 channels (Liu and Siegelbaum 2000) extending the analysis to mutant channels otherwise not functional (Becchetti and Gamel 1999; Sun et al. 1996). All these constructs are very useful if the molecular structure of the CNGA1, CNGA1cys-free and CNGA1tandem is always the same or, if not, it is very similar.
In order to verify and to quantify these similarities, physiological properties of these channels were extensively compared by performing electrophysiological experiments where experimental variations were minimized. Ionic selectivity, cGMP dependency and blockage by a variety of compounds were investigated. Our results indicate that the electrophysiological properties of the CNGA1 and CNGA1tandem are not significantly different. By contrast, differences between several electrophysiological properties of CNGA1 and CNGA1cys-free are statistically significant. In addition, we show that Cd2+ ions in the absence of cGMP block irreversibly the mutant channels A406C and A406C&C481A&C505T in the WT background. By contrast, Cd2+ ions did not block the mutant channel A406C constructed in the CNGA1cys-free, but an irreversible blockage was observed in the closed state by the application of the cross-linker M–4–M (Loo and Clarke 2001). Blockage of mutant channel A406Ccys-free was not observed in the presence of MTS derivatives with the same length and a volume larger than that of M–4–M able to link covalently to only one cysteine. These results indicate that homologous residues at position 406 in the CNGA1cys-free are more distant by some Angstrom than in the CNGA1 channel. Functional differences between native and cysteine free proteins have already been reported and investigated (Kato et al. 1988; Kohler et al. 2003; Taylor et al. 2001), but their structural differences were rarely quantified. The present manuscript aims to quantify these differences.
Materials and methods
Three different bovine rod channel constructs were used. The CNGA1 channel, consisting of 690 residues, the CNGA1tandem, a tandem dimer construct and—a gift from William Zagotta—the CNGA1cys-free channel (Matulef et al. 1999). Selected residues were replaced by introducing a cysteine in the CNGA1 and CNGA1cys-free as previously described (Becchetti et al. 1999; Matulef et al. 1999) with the use of a Quick Change Site-Directed Mutagenesis kit (Stratagene). Point mutations were confirmed by sequencing them with the sequencer LI-COR 4200 series (LI-COR, Lincoln, NE). cDNAs were linearized and was transcribed to cRNA in vitro using the mMessage mMachine kit (Ambion, Austin, TX).
The tandem dimer construct was generated by the insertion of one copy of the CNGA1 DNA into a vector pGEMHE already containing another copy of CNGA1 DNA. At the end of cloning two copies of the CNGA1 DNA, they were connected by a 10-amino acid linker GSGGTELGST (Rothberg et al. 2002) joining the C-terminus of the first CNGA1 with the N-terminus of the second one. This second subunit was made by replacing the ApaI restriction site “GGGCCC” at the end of the CNGA1 DNA without changing the amino acid “GGTCCC” and adding at the start codon a new ApaI restriction site followed by a linker, using a PCR reaction. Subunits were linked after HindIII/ApaI cut.
Oocyte preparation and chemicals
The cross-linker M–2–M has a cross-linking span of 5.2 Å and an actual volume of 139 Å3. When M–2–M reacts with an S atom it loses one SO2CH3 group and when it cross-links with two S atoms its effective volume becomes 73.8 Å3. Longer cross-linkers, such as M–4–M, M–6–M, M–8–M and M–11–M can exist in different configurations, i.e. they have several rotamers illustrated in the first column of Fig. 1.
The different effect of reagents able to link to one cysteine—such as MTSET, MTSPT, MTSPtrEA—and those able to link to two cysteines—M–X–M cross-linkers—with the same size and volume is used to discriminate whether blockage is caused by bridging two cysteines by the binding of the compound to one end only.
cGMP-gated currents from excised patches were recorded with a patch-clamp amplifier (Axopatch 200B, Axon Instruments Inc., Foster City, CA, USA), 2–6 days after RNA injection, at room temperature (20–24°C). The perfusion system was as described (Sesti et al. 1995) and allowed a complete solution change in less than 1 s. Borosilicate glass pipettes had resistances of 3–5 MΩ in symmetrical standard solution. The standard solution on both sides of the membrane consisted of (in mM) 110 NaCl, 10 HEPES and 0.2 EDTA (pH = 7.4). The membrane potential was usually stepped from 0 to ±100 mV in 20 mV steps or ±60 mV. We used Clampex 8.0, Clampfit, and Matlab for data acquisition and analysis. Currents were low-pass filtered at 2 kHz and acquired digitally at 5 kHz.
Application of sulfhydryl-specific reagents
In the inside-out patch-clamp configuration, soon after patch excision, the cytoplasmic face of the plasma membrane was perfused with the same pipette-filling solution and then by adding 1 mM cGMP to it. The effect of divalent cations was tested by perfusing the intracellular side of the membrane with a standard solution without EDTA (to avoid partial divalent cation chelation), supplemented with variable concentrations of CdCl2 or 1 mM CaCl2 for different periods of time to study their effect in the closed state. In order to study the open state effect we applied these solutions in the presence of 1 mM cGMP.
Cross-linker compounds were dissolved in dimethyl sulfoxide (DMSO) and diluted in standard solution to a final concentration of 100 μM. The final concentration of DMSO was 0.1%. We checked that this concentration of DMSO did not affect the cGMP activated current. Solutions containing cross-linker compounds were prepared immediately before the application (typically <5 min) to prevent degradation, as these reagents dissociate rapidly in aqueous solution. They were not used for more then 45 min after dissolving in aqueous solution. The cross-linkers of different length were used to determine the distance between exogenously introduced cysteines (Loo and Clarke 2001; Ren et al. 2006).
Comparison of electrophysiological properties
In order to reduce the sources of variability in the comparison of electrophysiological properties, several precautions were taken. Solutions from the same stock were used to fill the patch pipette or to perfuse the intracellular side of the membrane in all three channels. In all experiments the mRNA of the three channels were injected in oocytes harvested from the same animal. Each experiment was repeated at least three times in the same experimental session. Statistical significance of different properties between two channels was analyzed using Student’s t test. For every data set, the current measured after a given chemical manipulation (YiA (I = 1, n)) was normalized (Ai = YiA/XiA) to the current measured in control condition (XiA (i = 1, n)). We used the Shapiro–Wilk test (Shapiro and Wilk 1965) to verify that normalized data had a Gaussian distribution. Variance comparison of normalized data were obtained by using the one sided F variance ratio method (Snedecor and Cochran 1989). Statistical significance was established using Student’s t test. Statistical difference was assumed to be high when ***P < 0.001, medium when **P < 0.01 and marginal when *P < 0.05.
The membrane topology of a single subunit of the CNGA1 channel from bovine rod is composed by six transmembrane segments, named S1, S2, S3, S4, S5, S6 containing seven native cysteines: Cys35, Cys169, Cys186, Cys314, Cys481, Cys505 and Cys573.
Cys35 is located near the N-terminal of the CNGA1 channel at the cytoplasmic side (Brown et al. 1998; Molday et al. 1991) and it is thought to interact with Cys481 in the open state, but not in the closed state (Gordon et al. 1997; Rosenbaum and Gordon 2002). Cys169 and Cys186 are located in S1 and their functional and/or structural role has not been studied in detail. Cys314 in the S5 transmembrane segment can interact with residues at position 380 in the S6 domain (Nair et al. 2006). Cys481 is located in the C-linker region (Brown et al. 1998) and its role in channel function has been extensively studied. Modification of Cys481 in the open state with sulfhydryl reagents potentiates CNGA1 channels (Brown et al. 1998). Cys505 in the CNB domain is accessible to sulfhydryl reagents in the closed state but not in the open state (Matulef et al. 1999; Sun et al. 1996). Finally, Cys573 is located near the C-terminus of the channel. Cys573 does not contribute to the potentiation observed by the application of compounds promoting the formation of disulfide bonds (Gordon et al. 1997) and does not seem to have any structural and functional role. Therefore Cys481 and Cys505 are the native cysteines in the C-linker region and in the CNB domain.
In the CNGA1cys-free the seven native cysteines were replaced by other aminoacids as described (Matulef et al. 1999). In CNGA1tandem channels, the N-terminal of the CNGA1 channel is linked to the C-terminal of another copy of the CNGA1 channel by a few aminoacid linker (Flynn and Zagotta 2003; Gordon and Zagotta 1995; Liu and Siegelbaum 2000; Rosenbaum and Gordon 2002; Varnum and Zagotta 1996).
In the following, an extensive comparison of physiological properties of the CNGA1, CNGA1tandem and CNGA1cys-free channels will be presented.
Electrophysiological differences among the three channels
The dose response, is shown in Fig. 2d for the CNGA1, CNGA1tandem and CNGA1cys-free channels. The cGMP concentration activating a half maximal current (K1/2) was 116.9 ± 7.2 (N = 7 patches), 96.6 ± 7.7 (N = 5) and 27.5 ± 6.1 μM (N = 6) for the three channels, respectively. In agreement with Matulef et al. (1999), the CNGA1cys-free channel has higher cGMP affinity than CNGA1 channel. The Student’s t test indicated that the difference between the K1/2 of CNGA1cys-free and CNGA1 channels is highly significant (***P < 0.0001) and the difference between the K1/2 of CNGA1tandem and CNGA1 channels is only marginal (*P < 0.05) (Fig. 2e).
Having compared the cGMP dose response we compared blockage by different compounds added at the intracellular side of the membrane. Blockage by divalent cations (Colamartino et al. 1991), TEA+, TMA+ (Menini 1990; Picco and Menini 1993) and tetracaine (Fodor et al. 1997a, b) was analyzed. These compounds have a different size and blocking mechanism and therefore their blockage can be used to probe the molecular environment of the intracellular side of the channel. TEA+ is a larger organic cation compared to TMA+ and its blocking effect on the current carried by Na+ ions in CNG channels is more effective (Menini 1990; Picco and Menini 1993). The WT CNGA1 channel does not have any cysteine residue in the pore region and therefore any effect of Cd2+ ions on the inner pore of CNGA1 channels cannot be ascribed to interactions with thiol groups. In all channels Cd2+ ions potentiated the amplitude of the cGMP activated current at negative voltages. However, at +100 mV we consistently observed a lower blockage in CNGA1cys-free channels (see Fig. 2f). The different blockage at +100 mV observed in the CNGA1cys-free was statistically significant (t test provides a value of **P < 0.001). The effect caused by the addition of Cd2+ ions were both quickly and entirely reversible as soon as Cd2+ ions were removed from the bathing medium.
The blockage of CNG channel by organic cations requires a concentration of the order of 10−2 M and therefore their blockage is less potent compared to Cd2+ requiring concentrations 10 and 100 times lower. We analyzed blockage by TMA+ and TEA+ when 110 mM Na+ was present on both sides of the membrane and 25, 50 and 75% of Na+ in the intracellular medium was replaced by TMA+ or TEA+. When Na+ ions were replaced by TMA+ differences among the CNGA1, CNGA1tandem and CNGA1cys-free channels were not statistically significant.
In contrast to what observed with TMA+ blockage, TEA+ blocked the cGMP activated current more potently in the CNGA1cys-free channels than in CNGA1 and CNGA1tandem channels. At positive voltages replacing the concentration of intracellular Na+ ions with TEA+ by 25, 50 and 75%, it decreased the cGMP current (see Fig. 2g). Differences between CNGA1 and CNGA1tandem channels were not statistically significant, but the differences of CNGA1cys-free with CNGA1 channels were important: in fact the significance was **P < 0.01 in all three cases. Also at negative voltages, i.e. at −100 mV the presence of 27.5, 55 and 82.5 mM TEA+ at the intracellular side of the membrane reduced the Na+ influx. Similarly to what observed at +100 mV differences between the CNGA1 and CNGA1tandem channels were not statistically significant but differences with the CNGA1cys-free channel were significant with *P < 0.05 in the presence of 25% TEA+ and **P < 0.01 in the presence of 50 and 75% of TEA+. TEA+ effect was analyzed in the presence of a saturating cGMP concentration and therefore the different blockage observed in the CNGA1 and CNGA1cys-free channels cannot be ascribed to their different sensitivity to cGMP, as in the presence of 1 mM cGMP both channels have an open probability about 0.9.
Electrophysiological similarities among the three channels
The presence of the CNGB1 subunit makes the native CNG channel more permeable to Li+ than to Na+ (Kaupp et al. 1989; Körschen et al. 1995). In this analysis, the selectivity to monovalent alkali cations was estimated by measuring Vrev in bi-ionic conditions, in saturating cGMP. The pipette always contained 110 mM NaCl, while the equimolar monovalent alkali cationic solutions were changed at the intracellular side of the patch. Currents were elicited by applying ±40 mV in step of 2 mV across the patch membrane. A comparison of the measured Vrev among the three channels showed that the three channels had similar values of Vrev within the experimental variability.
It is well known that Ca2+ ions permeate through CNG channels but also block the current carried by Na+ ions (Colamartino et al. 1991). Ca2+ ions block CNG channels from the extracellular side rather powerfully and the concentration of Ca2+ blocking half of the maximal current is voltage dependent and is 288 μM at +80 mV and 2.3 μM at −30 mV (Eismann et al. 1994). At the intracellular side Ca2+ ions block CNGA1 channels less powerfully and the Ca2+ concentration blocking half of the maximal cGMP activated current is 2.3 mM at +80 mV and 6.9 mM at −80 mV. Ca2+ blockage is partly mediated by Glu363 at the extracellular mouth of the inner pore (Root and MacKinnon 1993). In none of the three channels under investigation, Ca2+ ions potentiated the cGMP current at negative voltages, as observed in the presence of Cd2+ ions. Similar to Cd2+ ions, at positive voltages Ca2+ ions potently blocked the cGMP activated current in a voltage dependent way. When data from all patches were considered for a statistical analysis, Ca2+ blockage in CNGA1cys-free, CNGA1tandem and in the WT CNGA1 channels was not significantly different.
Tetracaine at micromolar concentrations added to the intracellular side of the membrane blocks the CNGA1 channels (Fodor et al. 1997b) and is therefore a more potent blocker of CNGA1 channels than divalent cations, TMA+ and TEA+. In the light of this, we have compared tetracaine blockage in the three channels under investigation. The blockage was measured at the end of voltage pulses lasting 100 ms. In the presence of 1 mM cGMP, the tetracaine concentration blocking half of the cGMP activated current T1/2 at +80 mV was 5.3 ± 2.3 (N = 6), 4.2 ± 0.9 (N = 5) and 4.2 ± 0.9 (N = 6) μM for the CNGA1, CNGA1cys-free and CNGA1tandem channels, respectively. At −80 mV the values of T1/2 was 11.77 ± 4.38, 10.32 ± 4.31 and 8.88 ± 1.35 μM, respectively for the three channels. In agreement with a previous report (Fodor et al. 1997b) blockage by tetracaine in the presence of a lower cGMP concentration was stronger in all three channels. These results do not highlight any difference in tetracaine blockage in the three channels. Therefore ionic selectivity, Ca2+ and tetracaine blockage was very similar in the three channels.
Irreversible Cd2+ blockage in cysteine mutants in CNGA1 and CNGA1cys-free channels
The comparison of physiological properties described in the previous sections has not identified any significant difference between the CNGA1 and CNGA1tandem channels, but has indicated differences between the CNGA1 and CNGA1cys-free channels. In the following session, we will attempt to quantify structural differences between these two channels.
The distance between residues in homologous subunits can be estimated by studying which cross-linking reagents, among those shown in Fig. 1, is able to cross-link the mutant channel obtained when these residues are mutated into cysteines. The existence of a residue cross-linked by reagents with different cross-linking span in the CNGA1 and CNGA1cys-free channels provides a quantification of the structural difference between the two channels, at least for that residue. We have scanned the C-linker domain of CNGA1 channels looking for residues which when mutated in a cysteine in the CNGA1 channel background—but not in the CNGA1cys-free channel background—lead to mutant channels blocked by Cd2+ ions. Several residues in this region were identified, such as Asn402, Ala406, Gln409, Asp413, Ala414, Gln417 and Tyr418. In order to find the appropriate residue we looked for a mutant channel where Cd2+ blockage was not altered when neighboring endogenous cysteines were replaced by residues not able to bind Cd2+ ions. With this rationale we identified Ala406 as the suitable residue. Therefore, we have studied the irreversible blockage of the cGMP activated current after a 5 min application of 200 μM Cd2+ to the intracellular side of the membrane patch in the closed state in mutant channels A406C and A406Ccys-free. We use a concentration of 200 μM Cd2+, which does not produce any significant change of the cGMP activated current in the WT CNGA1 channel and causes an irreversible blockage of the cGMP activated current in mutant channels N402C, A406C, Q409C, D413C, A414C and Q417C within 2 or 3 min.
As shown in Fig. 3c Cd2+ blockage although slightly reduced is still observed in the triple mutant channel A406C&C481A&C505T. In the mutant channel A406C the irreversible blockage induced by 200 μM Cd2+ ions was 93 ± 6% (N = 5) and in the triple mutant it was 65 ± 18% (N = 2).
The effect of MTS cross-linkers on mutant channel A406Ccys-free
We have also analyzed blockage of the cGMP current in mutant A406Ccys-free by cross-linkers of increasing length. As shown in Fig. 4c, cross-linkers M–2–M (N = 5) and M–11–M (N = 5) did not block significantly mutant channel A406Ccys-free, while cross-linkers M–4–M (N = 6), M–6–M (N = 4) and M–8–M (N = 6) all blocked the mutant channel A406Ccys-free, with cross-linker M–4–M being the most potent blocker. M–2–M did not block the mutant channel A406Ccys-free probably because of its shorter cross-linking span. M–6–M and M–8–M cross-linkers exist in several rotamers (see Fig. 1) so that they can have an effective cross-linking span similar to that of M–4–M. We examined the effect of the M–2–M and M–4–M cross-linkers applied in the closed state of the mutant channels A406C and A406C&C481A&C505T. 100 μM M–2–M did not block either the mutant channel A406C (10.4 ± 9.4%; N = 5) or the triple mutant channel A406C&C481A&C505T (12 ± 10%; N = 4). Blockage by 100 μM M–4–M was also low with 13 ± 9.7% (N = 5) of the A406C channel and 5 ± 4.5% (N = 4) blockage of the triple mutant channel A406C&C481A&C505T.
The observed blockage of mutant channel 406Ccys-free by the cross-linker M–4–M could be caused by its binding to a single cysteine and a consequent steric blockage of the channel and not by its cross-linking to the two exogenous cysteines. A way to discriminate between these two mechanisms is to compare the effect of MTS compounds with an increasing volume. During the formation of an S–S bond, MTS compounds react and lose one SO2CH3 group. In this way the effective volume of MTS compounds reacting with a cysteine decreases by about 30 Å3. M–X–M cross linkers lose two SO2CH3 groups reducing their effective volume by about 60 Å3 (see Fig. 1). We then compared the blocking effect of 100 μM of different MTS compounds such as MTSET (N = 6), M–4–M (N = 6), MTSPT (N = 4) and MTSPtrEA (N = 8) (see Fig. 4d). MTSET is the shortest of the four compounds and MTS-PtrEA is the bulkiest. As shown in Fig. 4d, MTSET is shorter than M–4–M; in contrast, MTSPT and MTS-PtrEA have the same effective length of M–4–M but have a larger volume. If the mechanism of block caused by M–4–M is not mediated by cross-linking with two exogenous cysteines, also bulkier MTS compounds are expected to block the mutant channel A406Ccys-fre. But as shown in Fig. 4d neither 100 μM MTSET (N = 5) nor the same concentration of MTSPT blocked the mutant A406Ccys-free (N = 4) and the same concentration of the much bulkier compound MTSPtrEA blocked ∼30% (N = 8) of the current observed in the control condition (see Fig. 4d). These results show that the blockage observed by the M–4–M is caused by the cross-linking of exogenous cysteines. The absence of Cd2+ blockage in mutant channel A406Ccys-free is ascribed to the fact that the 3D structure of the CNGA1 and CNGA1cys-free is different and in particular residues at position 406 of the CNGA1cys-free are at a reciprocal distance not compatible with Cd2+ coordination but compatible with the coordination by the cross-linker M–4–M. In the A406C mutant channel residues at position 406 are at a compatible reciprocal distance to coordinate with Cd2+, but not with the longer cross-linkers M–2–M and M–4–M.
Two constructs derived from the CNGA1 channels from bovine rods have been recently proposed as useful tools for the investigation of the relation between structure and function in CNGA1 channels. The first construct is the CNGA1cys-free channels (Matulef et al. 1999), where all endogenous cysteines were replaced with other residues not bearing an S atom. The second construct is the CNGA1tandem where two CNGA1 subunits are joined together by a small linker composed of some tens of residues (Flynn and Zagotta 2003; Liu and Siegelbaum 2000; Matulef and Zagotta 2002; Rosenbaum and Gordon 2002; Rothberg et al. 2002). However, it has not been proven that ionic channels formed by these constructs have a 3D structure identical or very similar to that of the CNGA1 channel. On the basis of their experimental investigation regarding the physiological properties of CNGA1 and CNGA1cys-free channels, Matulef et al. (1999) concluded that mutation of all endogenous cysteines led to functional channels which were gated by cGMP in a way not too different from what observed in the CNGA1 channel. However, the degree of structural similarity between the CNGA1cys-free and CNGA1 was not established. The investigation of electrophysiological properties of CNGA1, CNGA1tandem and CNGA1cys-free channels here presented, does not show any statistically significant difference between the CNGA1 and CNGA1tandem channels. Several electrophysiological properties are remarkably similar and almost identical in CNGA1 and CNGA1cys-free channels, but these two channels differ in a significant way for their sensitivity to cGMP, Ca2+ ions TEA+.
Functional differences between native and cysteine free proteins have already been reported and investigated. Significant differences were observed in the B Glutathione Synthetase from Escherichia coli (Kato et al. 1988), the P-glycoprotein (Taylor et al. 2001) and the rat renal Na+/Pi cotransporter (Kohler et al. 2003), but their structural differences was not quantified. Results obtained with different MTS cross-linkers and reagents suggest that the distance between homologous residues at position 406 in CNGA1cys-free is longer than in the CNGA1 by 3–4 Å.
Electrophysiological differences between the CNGA1 and CNGA1tandem channels
The I/V relations, ionic selectivity, dose response of the cGMP activated current and blockage by Ca2+ and Cd2+ ions, tetracaine, TMA+ and TEA+ in CNGA1tandem and CNGA1 channels are not different. Since there is no electrophysiological difference between these two channels, we can then deduct that their 3D structure is very similar even though we cannot provide a precise estimate of this similarity.
Electrophysiological differences between the CNGA1 and CNGA1cys-free channels
The I/V relations, ionic selectivity, blockage by Ca2+ ions, tetracaine and TMA+ in CNGA1cys-free and CNGA1 channels are not different. However, three quantitative differences were observed in the electrophysiological properties of the CNGA1 and CNGA1cys-free channels. First, as shown in Fig. 2 the concentration of cGMP activating half of the maximal current K1/2 was 116.9 ± 7.2 and 27.5 ± 6.1 for the CNGA1 and CNGA1cys-free channels, respectively, in agreement with what already observed by Matulef et al. (1999). Second, as shown in Fig. 2, at +100 mV, a concentration of 100 μM Cd2+ ions added to the intracellular side of the membrane blocked CNGA1cys-free to a lower extent than CNGA1 channels. Third, as shown in Fig. 2 and discussed in the text when Na+ ions were replaced with TEA+, the cGMP activated current at both +100 and −100 mV decreased more in CNGA1cys-free than in CNGA1 channels. These differences were statistically significant. Blockage by Ca2+ ions and by the organic compound TMA+ was not significantly different in CNGA1 and CNGA1cys-free channels.
Structural differences between the CNGA1 and CNGA1cys-free channels
The remarkable similarity of several functional properties between the CNGA1cys-free and the CNGA1 channels indicates that the 3D structure of the CNGA1 channels does not depend critically on the presence of cysteines and suggests that S–S bridges neither determine the 3D structure of a monomer nor their coassembly in a functional tetrameric channel. The similarity of ionic selectivity and blockage by Ca2+ ions, TMA+ and tetracaine indicates that the 3D structure of the two channels in the pore region is very similar but not identical: indeed Cd2+ and TEA+ blockage is different. The blockage of an ionic channel can be modulated by the position and properties of a single residue (Bucossi et al. 1996; Gordon and Zagotta 1995) and significant functional differences can originate from very small structural changes often of the order of just 1 Å or less. For instance, single channel properties of the CNGA1 channel change when the length of the side chain at position 363 is reduced by 1 Å in the mutant E363D (Bucossi et al. 1997).
The Cα of residues at position 406 of the CNGA1 are at distance of about 8–11 Å, but the distance between the same residues in the CNGA1cys-free channel is longer by several Angstrom, so that one Cd2+ cross-links homologous residues in the CNGA1 channel but not in the CNGA1cys-free channel. In the CNGA1cys-free channel the reagent M–4–M is necessary to cross-link the same homologous residues, so that the distance between their Cα is about 14.5 Å, i.e. approximately 3 Å more than in the CNGA1 channel. As the strength and nature of chemical interactions change drastically when distances are increased by 3–4 Å, the way in which the CNGA1 and CNGA1cys-free channels interact with chemical probes can be completely different. This conclusion is not surprising, as when all cysteines are removed from a protein the overall 3D structure can change quite significantly. Indeed we have previously shown that it was possible to lock the mutant channel F380C channel in the open and closed state, but only to some extent when Phe380 is replaced with a cysteine in the CNGA1cys-free channel (Nair et al. 2006).
It is concluded that physiological properties of the CNGA1 and CNGA1cys-free are remarkably similar, despite the major role of cysteines in the determination of protein structure. However, the 3D structure of these two channels is not identical and indeed distances between homologous residues can be different by some Å.
We are extremely thankful to William Zagotta who very generously supplied us with the clone of the CNGA1 and CNGA1cys-free channels and Claudio Anselmi for helpful discussions. This work was supported by a HFSP grant, a COFIN grant from the Italian Ministry, a grant from CIPE (GRAND FVG) and a FIRB grant from MIUR.