European Biophysics Journal

, Volume 37, Issue 5, pp 627–638

Analysis of membrane-localized binding kinetics with FRAP

Authors

  • Omer Dushek
    • Department of MathematicsUniversity of British Columbia
    • Institute of Applied MathematicsUniversity of British Columbia
  • Raibatak Das
    • Department of MathematicsUniversity of British Columbia
    • Department of Microbiology and ImmunologyUniversity of British Columbia
    • Department of MathematicsUniversity of British Columbia
    • Institute of Applied MathematicsUniversity of British Columbia
Original Paper

DOI: 10.1007/s00249-008-0286-z

Cite this article as:
Dushek, O., Das, R. & Coombs, D. Eur Biophys J (2008) 37: 627. doi:10.1007/s00249-008-0286-z

Abstract

Interactions between plasma membrane-associated proteins on interacting cells are critical for many important biological processes. Few experimental techniques, however, can accurately determine the association and the dissociation rates between such interacting pairs when the two molecules diffuse on apposing membranes or lipid bilayers. In this study, we give a theoretical description of how and when fluorescence recovery after photobleaching (FRAP) experiments can be used to quantify these reaction rates. We analyze the effect of binding on FRAP recovery curves with a reaction–diffusion model and systematically identify different regimes in the parameter space of the association and the dissociation constants for which the full model simplifies into equivalent one-parameter models. Based on this analysis, we propose an experimental protocol that may be used to identify the kinetic parameters of binding in the appropriate parameter regime. We present simulated experiments illustrating our protocol and lay down guidelines for parameter estimation.

Keywords

Fluorescence recovery after photobleachingSurface binding kineticsMathematical modelLigand–receptor bindingFRAP

Supplementary material

249_2008_286_MOESM1_ESM.pdf (144 kb)
Supplementary material (145 kb)

Copyright information

© EBSA 2008