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Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition

  • Fungal Microbiology
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Abstract

To minimize the degradation of soil organic matter (SOM) content in conventional sugarcane cropping, it is important to understand how the fungal community contributes to SOM dynamics during the decomposition of sugarcane leaf litter. However, our knowledge of fungal diversity in tropical agroecosystems is currently limited. Thus, we determined the fungal community structure on decomposing sugarcane leaf litter and their response to different soil management systems using the internal transcribed spacer region 1 (ITS1) amplicon sequencing method afforded by Ion Torrent Personal Genome Machine (PGM). The results indicate that no-tillage had positive effects on the relative abundance of Zygomycota and of some taxa that may prefer a moist environment over conventional tillage, whereas bagasse mulching decreased the richness of operational taxonomic units (OTUs) and had positive effect on the relative abundance of slow-growing taxa, which may prefer poor nutrient substrates. Furthermore, a combination of no-tillage and bagasse mulching increased the abundance of unique OTUs. We suggest that the alteration of fungal communities through the changes in soil management practices produces an effect on litter decomposition.

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Acknowledgments

Our study was supported in part by a Grant-in-Aid for the Global COE Program E03 for Global Eco-Risk Management from Asian Viewpoints; the YNU International Environmental Leaders Program in Sustainable Living with Environmental Risk funded by Promoting Science and Technology System Reform of the Promotion of Science and Technology, Japan; and a grant from Yokohama National University and MEXT KAKENHI Grant Number 25220104. We thank the staff at the Gunung Madu Plantations for permitting this study and supporting the field experiment, Prof. John Hendri and Prof. Andi Setiawan in the Department of Chemistry FMIPA at the University of Lampung, and Dr. Udin Hasanuddin in the Department of Agroindustrial Technology, Faculty of Agriculture at the University of Lampung for supporting the field and laboratory experiments. We are also grateful to Dr. T. Nakamori at the Graduate School of Environment and Information Sciences, Yokohama National University, for helpful conversations regarding sequencing analysis. The data parsing processes were performed using the super computer system provided by the National Institute of Genetics (NIG), Japan.

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Authors and Affiliations

  1. Graduate School of Environment and Information Sciences, Yokohama National University, 79-7 Tokiwadai, Hodogaya-ku, Yokohama, 240-8501, Japan

    Toshiko Miura, Koichi Fujie & Nobuhiro Kaneko

  2. Department of Soil Science, University of Lampung, Bandar Lampung, Indonesia

    Ainin Niswati

  3. Department of Plant Pest and Diseases, University of Lampung, Bandar Lampung, Indonesia

    I. G. Swibawa

  4. Research and Development Division of PT Gunung Madu Plantations, Sumatra, Indonesia

    Sri Haryani & Heru Gunito

  5. Environmental Education Center, Miyagi University of Education, Sendai, Japan

    Satoshi Shimano

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  1. Toshiko Miura
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Correspondence to Toshiko Miura.

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Miura, T., Niswati, A., Swibawa, I.G. et al. Diversity of Fungi on Decomposing Leaf Litter in a Sugarcane Plantation and Their Response to Tillage Practice and Bagasse Mulching: Implications for Management Effects on Litter Decomposition. Microb Ecol 70, 646–658 (2015). https://doi.org/10.1007/s00248-015-0620-9

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