Journal of Molecular Evolution

, Volume 54, Issue 1, pp 134–137

Curiously Modern DNA for a ``250 Million-Year-Old'' Bacterium

  • David C.  Nickle
  • Gerald H.  Learn
  • Matthew W.  Rain
  • James I.  Mullins
  • John E.  Mittler

DOI: 10.1007/s00239-001-0025-x

Cite this article as:
Nickle, D., Learn, G., Rain, M. et al. J Mol Evol (2002) 54: 134. doi:10.1007/s00239-001-0025-x

Abstract.

Studies of ancient DNA have attracted considerable attention in scientific journals and the popular press. Several of the more extreme claims for ancient DNA have been questioned on biochemical grounds (i.e., DNA surviving longer than expected) and evolutionary grounds (i.e., nucleotide substitution patterns not matching theoretical expectations for ancient DNA). A recent letter to Nature from Vreeland et al. (2000), however, tops all others with respect to age and condition of the specimen. These researchers extracted and cultured a bacterium from an inclusion body from what they claim is a 250 million-year (Myr)-old salt crystal. If substantiated, this observation could fundamentally alter views about bacterial physiology, ecology and evolution. Here we report on molecular evolutionary analyses of the 16S rDNA from this specimen. We find that 2-9-3 differs from a modern halophile, Salibacillus marismortui, by just 3 unambiguous bp in 16S rDNA, versus the ∼59 bp that would be expected if these bacteria evolved at the same rate as other bacteria. We show, using a Poisson distribution, that unless it can be shown that S. marismortui evolves 5 to 10 times more slowly than other bacteria for which 16S rDNA substitution rates have been established, Vreeland et al.'s claim would be rejected at the 0.05 level. Also, a molecular clock test and a relative rates test fail to substantiate Vreeland et al.'s claim that strain 2-9-3 is a 250-Myr-old bacterium. The report of Vreeland et al. thus falls into a long series of suspect ancient DNA studies.

Key words: Two hundred fifty million-year-old bacterium — Halophiles — Phylogenetic — Molecular clock — Relative rates test — Ancient DNA

Copyright information

© Springer-Verlag New York Inc. 2002

Authors and Affiliations

  • David C.  Nickle
    • 1
  • Gerald H.  Learn
    • 1
  • Matthew W.  Rain
    • 1
  • James I.  Mullins
    • 1
  • John E.  Mittler
    • 1
  1. 1.Department of Microbiology, University of Washington, Seattle, WA 98195-7242, USAUS