Theoretical and Applied Genetics

, Volume 109, Issue 7, pp 1448–1458

Development of a standard set of microsatellite reference alleles for identification of grape cultivars

  • P. This
  • A. Jung
  • P. Boccacci
  • J. Borrego
  • R. Botta
  • L. Costantini
  • M. Crespan
  • G. S. Dangl
  • C. Eisenheld
  • F. Ferreira-Monteiro
  • S. Grando
  • J. Ibáñez
  • T. Lacombe
  • V. Laucou
  • R. Magalhães
  • C. P. Meredith
  • N. Milani
  • E. Peterlunger
  • F. Regner
  • L. Zulini
  • E. Maul
Original Paper

DOI: 10.1007/s00122-004-1760-3

Cite this article as:
This, P., Jung, A., Boccacci, P. et al. Theor Appl Genet (2004) 109: 1448. doi:10.1007/s00122-004-1760-3

Abstract

In order to investigate the comparability of microsatellite profiles obtained in different laboratories, ten partners in seven countries analyzed 46 grape cultivars at six loci (VVMD5, VVMD7, VVMD27, VVS2, VrZAG62, and VrZAG79). No effort was made to standardize equipment or protocols. Although some partners obtained very similar results, in other cases different absolute allele sizes and, sometimes, different relative allele sizes were obtained. A strategy for data comparison by means of reference to the alleles detected in well-known cultivars was proposed. For each marker, each allele was designated by a code based on the name of the reference cultivar carrying that allele. Thirty-three cultivars, representing from 13 to 23 alleles per marker, were chosen as references. After the raw data obtained by the different partners were coded, more than 97% of the data were in agreement. Minor discrepancies were attributed to errors, suboptimal amplification and visualization, and misscoring of heterozygous versus homozygous allele pairs. We have shown that coded microsatellite data produced in different laboratories with different protocols and conditions can be compared, and that it is suitable for the identification and SSR allele characterization of cultivars. It is proposed that the six markers employed here, already widely used, be adopted as a minimal standard marker set for future grapevine cultivar analyses, and that additional cultivars be characterized by means of the coded reference alleles presented here. The complete database is available at http://www.genres.de/eccdb/vitis/. Cuttings of the 33 reference cultivars are available on request from the Institut National de la Recherche Agronomique Vassal collection (didier.vares@ensam.inra.fr).

Supplementary material

transformation_data.mdb (462 kb)
Transformation data (mdb 473 KB)
Coded_data-EMS.xls (116 kb)
Coded data (xls 118 KB)
Experimental_conditions.xls (24 kb)
Experimental conditions (xls 24 KB)
Numerical_data-EMS.xls (80 kb)
Numerical data (xls 82 KB)

Copyright information

© Springer-Verlag 2004

Authors and Affiliations

  • P. This
    • 1
  • A. Jung
    • 2
  • P. Boccacci
    • 3
  • J. Borrego
    • 4
  • R. Botta
    • 3
  • L. Costantini
    • 5
  • M. Crespan
    • 6
  • G. S. Dangl
    • 7
  • C. Eisenheld
    • 8
  • F. Ferreira-Monteiro
    • 9
  • S. Grando
    • 5
  • J. Ibáñez
    • 4
  • T. Lacombe
    • 1
  • V. Laucou
    • 1
  • R. Magalhães
    • 10
  • C. P. Meredith
    • 7
  • N. Milani
    • 6
  • E. Peterlunger
    • 11
  • F. Regner
    • 8
  • L. Zulini
    • 11
  • E. Maul
    • 2
  1. 1.Laboratory of Grape Genetics UMR Diversité et Génomes des Plantes Cultivées (DGPC), Institut National de la Recherche Agronomique (INRA)MontpellierFrance
  2. 2.Federal Centre of Breeding Research on Cultivated PlantsInstitute for Grapevine Breeding GeilweilerhofSiebeldingenGermany
  3. 3.Centro di Studio per il Miglioramento Genetico e la Biologia della Vite–CNR, Dipartimento di Colture ArboreeUniversità degli Studi di TorinoGrugliascoItaly
  4. 4.Instituto Madrileño de Investigación Agraria y AlimentariaFinca “El Encín”Alcalá de HenaresSpain
  5. 5.Laboratory of Molecular GeneticsIstituto Agrario S. Michele all’ AdigeTrentoItaly
  6. 6.Sezione Ampelografia e Miglioramento GeneticoIstituto Sperimentale per la ViticolturaSusegana (Treviso)Italy
  7. 7.Department of Viticulture and EnologyUniversity of CaliforniaDavisUSA
  8. 8.Department for Grapevine BreedingHBLA u. BA KlosterneuburgRehgraben 2Austria
  9. 9.Instituto Portugues de Viticultura e Enologia (IPVE)MaiaPortugal
  10. 10.Instituto de Ciencias Biomedicas de Abel Salazar (ICBAS)Universidade do PortoPortoPortugal
  11. 11.Department of Crop Production and Agricultural TechnologyUniversity of UdineUdineItaly