Diversity of Cl− Channels
- First Online:
- Cite this article as:
- Suzuki, M., Morita, T. & Iwamoto, T. Cell. Mol. Life Sci. (2006) 63: 12. doi:10.1007/s00018-005-5336-4
Cl− channels are widely found anion pores that are regulated by a variety of signals and that play various roles. On the basis of molecular biologic findings, ligand-gated Cl− channels in synapses, cystic fibrosis transmembrane conductors (CFTRs) and ClC channel types have been established, followed by bestrophin and possibly by tweety, which encode Ca2+-activated Cl− channels. The ClC family has been shown to possess a variety of functions, including stabilization of membrane potential, excitation, cellvolume regulation, fluid transport, protein degradation in endosomal vesicles and possibly cell growth. The molecular structure of Cl− channel types varies from 1 to 12 transmembrane segments. By means of computer-based prediction, functional Cl− channels have been synthesized artificially, revealing that many possible ion pores are hidden in channel, transporter or unidentified hydrophobic membrane proteins. Thus, novel Cl−-conducting pores may be occasionally discovered, and evidence from molecular biologic studies will clarify their physiologic and pathophysiologic roles.
Key words.ClCCFTRbestrophintweetyvolume regulationCa2+ activationpharmacologyknockout mouse
Cl− channels are expressed as selective anion pores, have been found in a variety of physiologic preparations and are ubiquitously distributed, including in oocytes. Cl− channels allow the passive diffusion of negatively charged ions along electrochemical gradients or the transport of positive charges, and they conduct other anions, such as HCO3−, I−, SCN− and NO3−. The physiological roles of Cl− channels in the plasma membrane and in the vesicular membrane of intracellular organelles were vigorously investigated in the 1980s. Measurement of Cl− current in various cells revealed that Cl− channel gates were regulated by membrane voltage, cell volume, extracellular ligands, intracellular ions (such as Ca2+, H+ or anions) or phosphorylation of residues by various protein kinases. Therefore, one method of classification of Cl− channels was based on their functions. To summarize the diversity of function, the following list may conducted on the basis of phenotype in vivo: (i) ligand-gated transmission in the post-synaptic membrane, (ii) stabilization of resting membrane potential in (skeletal) muscle, (iii) depolarization of smooth-muscle cells or possibly of retinal pigment epithelium, (iv) cell-volume regulation in various cells, (v) fluid transport in epithelia and (v) neutralization of H+ ions in lysosomal vesicles.
Identification of a molecule usually leads to a breakthrough in elucidating its function. γ-aminobutyric acid (GABA or glycine receptors are composed of heteromeric subunits forming a Cl− channel that plays roles in post-synaptic membranes, as mentioned above in (i). The most exciting topic in Cl− channel research was the cloning and functional expression of the first member of the ClC family, by Jentsch et al. . Interestingly, mutations in the ClC family have revealed that the ClC family covers functional roles in diverse processes, as mentioned above in (ii) to (vi). Furthermore, the study of mice lacking some ClCs has taught us that morphogenesis is an additional role of Cl− channels in the normal development of organs . These aspects of Cl− channels have been extensively discussed in a recent comprehensive review by Jentsch et al. . In addition, Nilius [3–6] has extensively reviewed volume-sensitive and Ca2+-activated Cl− channels.
Single-channel conductance and endogenous Cl− current.
ClC0 (two opening states)
8, 20 pS
unknown owing to endosomal channels
GABAA (multiple states)
12, 17–20 and 27–30 pS
Amino acid transporter
Glycine receptor (multiple states)
12–14, 18–23, 24–36, 42–49, 59–72, 80–94 and 105–112 pS
TTYH3 (two opening states)
260, 50 pS
steeply outward-rectified by intracellular Ca
weakly outward-rectified by swelling
steeply outward-rectified (large conductance)
Functional transporters or other channels occasionally allow anion conductance. An example is an amino acid, glutamate transporter expressed in Xenopus oocytes, in which a Cl− current has been observed after the binding of glutamate to the transporter . Aquaporin-6 (AQP-6) encodes an Hg2+-sensitive water channel that is simultaneously expressed as a unique acid-dependent Cl− channel .
Crystal structural analysis performed on ClC channels has shown a unique homodimeric composition . Interestingly, bacterial ClC shows a characteristics of Cl−/H+ transporters as well as Cl− channels . Such a complex structure-function relation is found only in anion carrying protein, not in cation channels.
On the other hand, functional Cl− channel pores can be artificially designed and synthesized as 20–30 amino acids . These peptides assemble to make a functional pore consisting of a cluster of 4 or 5 molecules. The proposed structure of the peptide shows an a-helix possessing hydrophilic alignment on one side and a hydrophobic cluster of amino acids on the other [21, 22]. As suggested by studies of peptide channels, construction of a non-selective anion or cation selective pore is easier than construction of a Na+ or K+ selective pore. Thus, the Cl− channel may be formed occasionally by unrelated clusters of TMSs that form a hydrophilic pore .
In this review, explanations of the molecular functions of Cl− channels are given, according to the above criteria, and consideration of the Cl− channel pore suggests the possibility of the future discovery of novel Cl− channels. Discussion of ligand-gated Cl− channels is omitted because of detailed reviews elsewhere [24, 25].
Diversity of Cl− channel function
Ligand-gated transmission in the post-synaptic membrane
There are a number of articles and reviews regarding the ligand-gated Cl− channel GABA and glycine receptor .
Stabilization of membrane potential
Excitation of the membrane is generally achieved by an influx of the cations Na+ and/or Ca2+. The subsequent recovery of membrane potential is driven by the efflux of K+ or by the influx of Cl−. The ClC-1 channel is a voltage-dependent type of channel that is a known example of a membrane potential stabilizer and is expressed in skeletal muscle. It has a single-channel conductance of 1 pS and contributes approximately 75% of the resting conductance of the muscle membrane, with a high open probability at negative membrane potential. The ClC-1 channel suppresses depolarizing inputs and stabilizes the membrane potentials [27–29]. Mutations in the ClC-1 channel cause either recessive or dominant congenital myotonia, in which the mutant ClC-1 channels act as dominant negative subunits of the ClC-1 channel pore . Homodimers or heterodimers of mutants with wild-type subunits result in a dramatic shift in voltage dependency. A loss of membrane potential stabilization by the mutant leads to prolonged depolarization of excitable membrane, resulting in a myotonic phenotype. The ClC-2 channel is activated by hyperpolarization, acidic pH and swelling of the cell [31, 32]. Postsynaptic GABAA and glycine receptors are ligand-gated Cl− channels that yield hyperpolarizing or depolarizing currents, depending on the intracellular Cl− concentration . Since the activity of ClC-2 determines intracellular Na+ and Cl− concentration , iCIC-2 is important in GABA and andglycine-induced hyperpolarization and depolarization. Activation of ClC-2 may help the ligandgated Cl− channels to yield hyperpolarizing currents. ClC-2 is thus assumed to play a role in membrane stabilization with hyperpolarizing transmission by GABA and glycine in neurons. The mapping of an epilepsy susceptibility locus close to the CLCN2 gene suggested that Clcn2-/ — mice might suffer from spontaneous seizures [35, 36]. However, the lack of ClC-2 in mice has resulted in retinal degeneration or male infertility without a lowered threshold of seizure by chemicals . This is one example of the unexpected physiological role of Cl− channels revealed from work with knockout animals.
In contrast to excitable membrane in which voltage-dependent cation channels play an important role in suppressive depolarization, in non-excitable cells, such as smooth muscle cells, the opening of Cl− channels drives the membrane potential VCl, which is approximately −20 mV and which is excitable depolarization. When excitatory ligand binds to smooth-muscle cells, a rise in intracellular Ca2+ occurs in response to the second messenger. The CaC channel has been recorded in a variety of electrophysiologic preparations and is ubiquitously distributed across all cell types , although not always fully evident. In isometric tension recordings, niflumic acid, a blocker of the CaC channel, inhibited spontaneous contractions. The CaC channel has received further attention in the study of secretory, epithelial, smooth-muscle and neuronal cell types, but the properties and phenotypic functions of the CaC channel are not as well characterized as those for Ca2+-activated K (CaK) channels [38–40].
CaC and CaK channels are frequently coexpressed and coactivated by elevation of Ca2+ concentration within the cell. Simultaneous activation of CaC and CaK channels may help stabilize plasma membrane potential. For example, vascular smooth-muscle cells possess both channels: one of the CaK channels is a largeconductance channel, called the maxi-K channel when encoded by Drosophila slow poke, but the molecular nature of the CaC channel is not known. Spontaneous transient inward currents (STICs) are associated with the simultaneous opening of a CaC channel after the periodic release of Ca2+ from intracellular stores. STICs are often co-incident with spontaneous transient outward currents carried by CaK channels . In the absence of functional maxi-K channels when a defect in the b-subunit occurs, smooth-muscle cells tend to be constricted, resulting in high blood pressure . Assuming that the remaining CaC function is exaggerated in the absence of the maxi-K channel, CaC would contribute to excitation of smooth muscle, leading to contractions [38, 41].
mClCA1 is isolated from airway epithelia expressing a CaC channel current. An extensive comparison has been made between the currents evoked by mCLCA1 expression and native CaC channel currents in various smooth-muscle cells [12, 13, 42, 43]. Dithiothreitol, a blocker of mCLCA1, had no effect on CaC channels in murine portal vein cells; again, channel kinetics and channel modulation differed. Therefore, most subsequent studies concluded that mCLCA1 alone does not comprise the CaC channel  but is a subunit that aids the expression of endogenous CaC.
Proteins encoded by these genes might be involved in tumorigenesis. hCLCA2 is critical for endothelial adhesion of cancer cells as a complex with integrin b4 [45–47]. This is a novel and interesting mechanism because several studies have suggested that Cl− channels play a role in cell growth and apoptosis, as described below.
Recently, molecular identification of (probably small conductance) CaC channels was achieved . VMD (Best disease; MIM 153700) is an early onset, autosomal dominant disorder in which accumulation of lipofuscinlike material within and beneath the retinal pigment epithelia is associated with a progressive loss of central vision. The gene mutated in VMD, VMD2, was identified in 1998 [48, 49]. Bestrophin, a VMD gene product, is homologous to at least 3 other proteins within the human genome, 4 in the Drosophila genome and 24 in the Caenorhabditis elegans genome. An aberrant electrooculogram is noted when depolarization of retinal pigment epithelial cells is reduced, suggesting that bestrophin encodes a channel contributing to membrane depolarization. Induction of the light peak requires a ‘light-peak substance’ that is secreted by the neurosensory retina . Transduction of the signal that induces the light peak requires signaling across the retinal pigment epithelial cell from a proposed receptor at the apical surface of the cells to activate one or more Cl− channels in the basolateral plasma membrane of the retinal pigment epithelial cell. Bestrophin is involved in the small- to middle-conductance Cl− channel in the basolateral membrane, contributing to depolarization of the membrane and leading to granule secretion. Bestrophin encodes 4 or 6 TMSs and induces a larger Cl− current in HEK cells after an increase in intracellular Ca2+ released from the caged compound activated by light. Human, Drosophila or nematode bestrophins (1 and 2) have different types of current-voltage relationships . Furthermore, the mutant in VMD showed a dominant negative subunit and coexpression of mutant and wildtype heteromeric bestrophin, which provides less current than the wild-type homopolymer . Although HEK cells still possess endogenous Cl− channels, these results strongly indicate that bestrophin encodes CaC channels. Bestrophin is bound to protein phosphatase 2, and this mechanism is considered to be functionally regulated by phosphorylation/dephosphorylation by this enzyme . Exogenous bestrophin increases the magnitude of the Cl− channel current in HEK cells or in HeLa cells after exposure to hypotonic solution. Bestrophin may encode channels responsible for volume-sensitive Cl− channel current proposed to be <6 pS or may help to express these channels in the retinal pigment epithelial cells .
The functional role of CaC in vivo will be clarified in future analyses of these molecules.
Again, the molecular identification of VDCC has been difficult because of the absence of identification of the cell line of VDCCs (endogenous VDCCs in table 1). Various proteins are suspected to be molecular candidates for VDCCs. The three initial candidates, P-glycoprotein (P-gp) , pICln  and ClC-3, have since been discarded. On the basis of the well-known function of CFTR, hypothesized to be a bifunctional multiple-drug transporter, P-gp would adopt two mutually exclusive functional states, either as an adenosine triphosphate (ATP)-dependent drug transporter or a VDCC [61, 62]. However, this is unlikely because other laboratories could not repeat the original experiments on which this hypothesis was based.
The second protein that has been proposed for VDCCs is the ubiquitously expressed pICln . The electrophysiologic and pharmacological properties of pICln-associated Cl− conductance in Xenopus oocytes differ from those of VDCC currents. pICln has a constitutive cytosolic and nuclear location. pICln interacts with splice factors, suggesting a role in gene expression and embryonic development [63, 64].
The ClC-3 protein , a member of the ClC family, was suggested recently as a molecular candidate for VDCCs. However, some characteristics of ClC-3-induced currents, such as single-channel kinetics, biophysical properties such as rectification, modulation by PKC and the large current amplitude under isotonic conditions, are at variance with those of VDCCs [66, 67]. In addition, ClC-3 is mainly located in endosomes, and no changes in VDCCs have been detected in cardiac muscles in mice lacking the ClC-3 gene . Rather, disruption of the ClC-3 gene leads to morphologic abnormalities, suggesting that ClC-3 is important in maintaining pH and Cl− concentration within endosome vesicles, as discussed below. Recently, ClC-3 was again reported to be a fundamental molecular component of VDCCs in epithelial cells , in smooth muscle cells  and on the basis of antisense oligonucleotide experiments . Some associated proteins related to recycling of the plasma membrane and endosomes have been isolated . When the recycling is regulated by signal transduction induced by swelling, the complex of ClC-3 and an associated protein is a leading candidate in VDCCs .
We have reported that Drosophila tweety may encode a large-conductance CaC channel that has been detected on occasion in situ in endothelium, neurons or smoothmuscle cells . These channels have five or six TMSs [15, 79]. There are three members of the family of tweety homologs (TTYH1-3) in mammals. When TTYH1-3 are expressed in Chinese hamster ovary (CHO) cells, a large current is evoked by addition of a Ca2+ ionophore or in 0.1 mM Ca2+ in a pipette fill, which is sensitive to 10–100 mM DIDS but resistant to NPPB or niflumic acid. A spliced variant of TTYH1 was activated in the expressed cells exposed to hypotonic solution. A single-channel recording of TTYH3 showed Cl conductance of 260 pS in a cytosolic Ca2+ concentration of >1 mM, while a 250-pS endogenous Cl− channel can also be found after prolonged depolarization in CHO cells. Mutants of TTYH3 reveal altered selectivity to anion, suggesting that TTYHs may encode large-conductance Cl− channels. The tweety locus is adjacent to the flightless locus and is regulated by the same promoter, but whether tweety is directly related to flying in the fly is not known . The tweety gene is constantly expressed during development from the larva to the adult fly. There are two tweety families in Drosophila, and knockout of these genes has proved to be lethal. Thus, experimentation with tissueor time-specific knockout of these genes is essential to identification of their properties in vivo.
Another Cl− channel, the MID-1-related Cl− channel (MCLC), is a protein of 541 amino acids and four putative TMSs . MID-1 encoded a yeast Saccharomyces cerevisiae membrane protein of two TMS that is expressed as a stretch-activated cation channel in mammalian CHO cells . Using the MID-1 sequence as a probe, human MCLC has been cloned by BLAST search. MCLC is located in intracellular compartments, including the endoplasmic reticulum and the Golgi apparatus, and provides a 70-pS permeable Cl− channel in a planer lipid bilayer. MCLC is also considered to be a new class of VDCC expressed in intracellular compartments .
The mechanism for contribution of Cl− channels to NaCl fluid transport across epithelial cells is well documented and is summarized elsewhere [2, 82, 83]. One of the most striking examples put forward is the case of the ClC-Kb channel. The renal thick ascending loop of Henle is an essential part of the osmotic concentration gradient in the interstitial space, since NaCl is transported from the lumen to the interstitium without movement of free water (fig. 3). Luminal Na+ entering the cell via Na/K/2Cl transport (NKCC) is reabsorbed by the basolateral Na+/K+ pump, whereas K+ is recycled back through apical K+ channels (ROMK and Kir1.1). The accumulated Cl− is transported via the ClC-Kb channel through the basolateral membrane by means of the electrochemical gradient. Finally, NaCl accumulates in the interstitium, and K+ remains in the lumen, where K+ creates positive lumen potential and drives other cations, such as Ca2+ and Mg2+, to the interstitial space through the paracellular pathway. Barttin is a binding protein of the ClC-Kb channel, with a two-membrane spanning domain that plays a role in the membrane expression of this channel. The channels ClC-Ka and ClC-Kb are constitutively open when co-expressed with their subunit Barttin . Both channels are slightly outwardly rectifying, inhibited by extracellular acidosis and potentiated by an increase in extracellular calcium. Functional loss of NKCC, Kir1.1, ClC-Kb or Barttin is a cause of Bartter syndrome, in which nephrogenic diabetes insipides, hypokalemia, hypomagnesemia and hypocalcemia have been observed as variations in phenotype [82–84].
A similar schema can be illustrated for the cells of the Stria vascularis, which makes inner-ear fluid. The ClCKa and ClC-Kb channels are involved in the recycling of Cl− that accompanies the secretion of K+. A high concentration of K+ is necessary for hair cells to sense mechanical stimuli. Therefore, congenital deafness accompanied with diabetes insipidus is associated with genetic mutation in the ClC-Ka and ClC-Kb channels and in barttin protein [2, 4, 82, 83].
Another important Cl− channel is encoded by the cystic fibrosis transmembrane conductance regulator (CFTR) [85, 86]. Cystic fibrosis (CF), the most common lethal genetic disease among caucasians, is complicated by abnormal epithelial solute and fluid transport due to mutations in CFTR. CFTR belongs to the ATP-binding cassette (ABC) family of transporters, containing 12 predicted transmembrane helices and five cytoplasmic domains consisting of two nucleotide-binding domains (NBDs), a regulatory (R) domain containing numerous consensus phosphorylation sequences (fig. 1). The ABC superfamily regulates other processes in addition to its own role. For example, the sulfonylurea receptor, SUR, regulates K+ channels. Likewise, CFTR regulates Na channel (ENaC) and outward-rectified Cl− channel (ORCC) by excretion of ATP, although these are still controversial [87–89]. Work with truncation or mutation suggests that the first transmembrane domain (TMD-1) of CFTR, especially predicted a-helices 5 and 6, forms an essential part of the Cl− channel pore, whereas the first NBD domain is essential for its ability to regulate ORCCs . All three functions, Cl− channels, ORCC and Na+ channel together contribute isotonic transport of fluid across the respiratory epithelia .
Neutralization of H+ ions in lysosomal vesicles
The lysosome is an intracellular vesicular organelle that plays a role in protein degradation and has a low interior pH. To maintain this low pH, the vesicle possesses H+-ATPase-accumulating H+ ions. Accumulation of H+ ions is back-leaked by the electrochemical gradient until cationic deflection due to charge accumulation is diminished. To neutralize the voltage deflection and maintain pH, an acid-activated Cl− channel is required in order to accumulate Cl− in the interior of the vesicle. ClC-5, located in renal proximal tubules, is a well-known example of a Cl− channel that plays a role in protein degradation [2, 90–94]. A functional defect in this gene causes progressive renal failure with nephrocalcinosis. A defect in this channel apparently does not show abnormal metabolism of Cl−, water or Na+ ions. Thus, loss of Cl− permeability per se does not induce progressive loss of nephron function. Megalin, which is closely related to metabolism of 1,25(OH)2D3, is degraded in the lysosomes of renal proximal tubules . Similarly, several proteins, such as parathyroid hormone (PTH) and micromolecular proteins are not degraded in the proximal tubules. Lack of degradation of megalin and PTH in mice lacking ClC-5 is believed to lead to a high luminal concentration of these calcitropic proteins, resulting in microalbuminuria, hyperphosphaturia and hypercalciuria . Hypercalciuria, however, has not been observed in ClC-5 knockout mice used in different studies .
A defect in the Cl− channel in lysosomes (ClC-3) may further cause morphologic disorders. ClC-3 knockout mice are viable but smaller. They survive >1 year, but show severe degeneration of the CA1 region of the hippocampus and the retina, resulting in a complete loss of photoreceptors. Electrophysiological analysis of hippocampal slices from juvenile ClC-3 knockout mice revealed no major functional abnormalities, except for a slight increase in the amplitude of miniature excitatory postsynaptic currents . Another model lacking ClC-3 revealed significant kyphosis, in addition to brain anomalies, and no major change in swelling-activated Cl− permeability . Therefore, ClC-3 is an endosomal Cl− channel that is related to the degradation of proteins and that plays a role in morphogenesis in expressed tissue.
A defect in ClC-7 in the endosomes of osteoclasts reveals a striking phenotype, osteopetrosis, in which bone remodeling, reabsorption and calcification are not processed inherently. Osteoclasts generate and secrete H+, by means of H+-ATPase, into the surface of bone in order to digest mineral crystals. Ruffled border, a closed space on the reabsorption surface where secreted H+ accumulates, has a pH of 4.0–6.0. Osteoclasts lacking ClC-7 are unable to maintain a low pH. The mechanism is the same as that for maintenance of low pH in lysosomes .
AQP-6 is a member of water channel but is activated by a low pH, to express Cl− channel in renal collecting segments. AQP-6 is located in endosomes, suggesting that the functional role of this channel is similar to the above ClCs, although mice lacking this gene have not yet been studied [11, 97].
Do Cl− channels play a role in tumorigenesis?
Cl− channels are thought to contribute to cell growth. Glioma Cl− channels are upregulated in glioma cells. Some Cl− channel blockers induce suppression of gene p21 . Similarly, blocking of VDCC-related Cl− channels prevents apoptosis of various cells . As described above, the hClCA2 family may be related to tumorigenesis. hClCA1 is also related to carcinoma cells . These data may suggest a novel role for Cl− channels in biology, but evidence at the level of a single gene is needed.
Blockers of Cl− channels
Cl− channel blockers.
1. Classical Blockers
Disulfonic stilbenes (irreversibly binding)
DIDS, SITS 
Disulfonic stilbenes (reversibly binding)
NPPB, FFA, NFA 
Clofibric acid derivatives
CPP, CPPS-(-)CPB 
2. CIC blocker
Metal ions Zn2+, Cd2 
CICKa: 2-(p-chlorophenoxy)-3-phenylpropionic acid 
3. CFTR blocker
glibenclamide, tolbutamide 
DIDS (from inside
Thiazolidinone derivatives 
Scorpion venom 
4. Other blockers
p64:ts-tm-Calix(4)arene, DNDS 
CaC: antimalarial mefloquine, fluoxetin 
Macrolide antibiotics 
Unique reagents are being developed to discriminate between CaC channels and VDCCs. The antimalarial drug mefloquine and the antidepressant fluoxetine (Prozac), considered to be selective 5-hydroxytryptamine reuptake inhibitors, block CaC channels and have IC50 values of approximately 5 mM . VDCCs are inhibited specifically by antioestrogens such as clomiphen, nafoxidine and tamoxifen, and by antimalarials such as mefloquine. A large-conductance, volume-dependent Cl− channel is blocked by Gd3+ . Macloride antibiotics, erythromycin and clarithromycin may inhibit Cl current in some cells .
Structure and permeation of Cl− channels
There are several Cl− channel structures, suggested by their hydrophobic analysis (fig. 1). Mechanisms of Cl− channel permeation have been successfully studied by means of X-ray analysis of ClC channel crystals. This sophisticated method has revealed a complex structure of ClC channels and a binding motif of Cl− ions [19, 108]. The structure revealed a complex fold of 18 α-helices per subunit with at least two Cl− ions bound in the center of each protopore [109, 110]. These studies have shown that a lone Cl− ion bound to the center of the ClC pore is pushed out by a second ion that enters the pore and takes its place. The pushing of an ion by another is favorable for energy barriers that reduce the largest free-energy gap. This center portion is the narrowest part of the pore, formed by residues Tyr-445 and Ser-107  and stabilizes Cl− ions from the water shell, which prevents the passage of uncharged solutes through this gate. A critical glutamic acid residue was identified whose side chain seems to occupy a third Cl− ion binding site in the closed state and that moves away to allow Cl− binding [111, 112]. ClC has double-barreled pores, the pathways of which are determined by mutation analysis [7–9]. Compared with the structure of the K+ channel with six TMSs, the structure of ClC is far more complex and not predicted by hydrophobic analysis. Interestingly, crystallography shows prokaryotic ClC to be a H+/Cl− transporter rather than an anion channel . Furthermore, recent data support this finding, so that ClC0, 1, 2 and Ka/b function as ion channels, and ClC3-7 as Cl−/H+ exchangers .