Archives of Microbiology

, Volume 150, Issue 3, pp 254–266

Eubacterium acidaminophilum sp. nov., a versatile amino acid-degrading anaerobe producing or utilizing H2 or formate

Description and enzymatic studies
  • U. Zindel
  • W. Freudenberg
  • M. Rieth
  • J. R. Andreesen
  • J. Schnell
  • F. Widdel
Original Papers

DOI: 10.1007/BF00407789

Cite this article as:
Zindel, U., Freudenberg, W., Rieth, M. et al. Arch. Microbiol. (1988) 150: 254. doi:10.1007/BF00407789

Abstract

An obligately anaerobic, rod-shaped bacterium was isolated on alanine in co-culture with H2-scavenging Desulfovibrio and obtained in pure culture with glycine as sole fermentation substrate. The isolated strain, al-2, was motile by a polar to subpolar flagellum and stained Gram-positive. The guanine plus cytosine content of the DNA was 44.0 mol%. Strain al-2 grew in defined, reduced glycine media supplemented with biotin. The pure culture fermented 4 mol glycine to 3 mol acetate, 4 mol ammonia and 2 mol CO2. Under optimum conditions (34°C, pH 7.3), the doubling time on glycine was 60 min and the molar growth yield 7.6 g cell dry mass. Serine was fermented to acetate, ethanol, CO2, H2 and ammonia. In addition, betaine, sarcosine or creatine served as substrates for growth and acetate production if H2, formate or e.g. valine were added as H-donors. In pure culture on alanine under N2, strain al-2 grew very poorly and produced H2 up to a partial pressure of 3.6 kPa (0.035 atm). Desulfovibrio species, Methanospirillum hungatei and Acetobacterium woodii served as H2-scavengers that allowed good syntrophic growth on alanine. The co-cultures also grew on aspartate, leucine, valine or malate. Alanine and aspartate were stoichiometrically degraded to acetate and ammonia, whereas the reducing equivalents were recovered as H2S, CH4 or newly synthetized acetate, respectively. Growth of strain al-2 in co-culture with the hydrogenase-negative, formate-utilizing Desulfovibrio baarsii indicated that a syntrophy was also possible by interspecies formate transfer. Growth on glycine, or on betaine, sarcosine or creatine (plus H-donors) depended strictly on the addition of selenite (≥0.1 μM); selenite was not required for fermentation of serine, or for degradation of alanine, aspartate or valine by the co-cultures. Cell-free extracts of glycine-grown cells contained active glycine reductase, glycine decarboxylase and reversible methyl viologen-dependent formate dehydrogenase in addition to the other enzymes necessary for an oxidation to CO2. In all reactions NADP was the preferred H-carrier. Both formate and glycine could be synthesized from bicarbonate. Serine-grown cells did not contain serine hydroxymethyl transferase but serine dehydratase and other enzymes commonly involved in pyruvate metabolism to acetate, CO2 and H2. The enzymes involved in glycine metabolism were repressed during growth on serine. By its morphology and physiology, strain al-2 did not resemble described amino acid-degrading species. Therefore, the new isolate is proposed as type strain of a new species, Eubacterium acidaminophilum.

Key words

Interspecies hydrogen transferInterspecies formate transferAlanineSerineGlycine fermentationSeleniumGlycine reductaseSarcosine reductionBetaine reductionEubacterium acidaminophilum

Copyright information

© Springer-Verlag 1988

Authors and Affiliations

  • U. Zindel
    • 1
  • W. Freudenberg
    • 1
  • M. Rieth
    • 1
  • J. R. Andreesen
    • 1
  • J. Schnell
    • 2
  • F. Widdel
    • 2
  1. 1.Institut für MikrobiologieUniversität GöttingenGöttingenFederal Republic of Germany
  2. 2.Fakultät für BiologieUniversität KonstanzKonstanz 1Federal Republic of Germany
  3. 3.Mikrobiologie, FB BiologiePhilipps UniversitätMarburgGermany