Skip to main content
Log in

Nonparametric benchmark analysis in risk assessment: a comparative study by simulation and data analysis

  • Published:
Sankhya B Aims and scope Submit manuscript

Abstract

We consider the finite sample performance of a new nonparametric method for bioassay and benchmark analysis in risk assessment, which averages isotonic MLEs based on disjoint subgroups of dosages, and whose asymptotic behavior is essentially optimal (Bhattacharya and Lin, Stat Probab Lett 80:1947–1953, 2010). It is compared with three other methods, including the leading kernel-based method, called DNP, due to Dette et al. (J Am Stat Assoc 100:503–510, 2005) and Dette and Scheder (J Stat Comput Simul 80(5):527–544, 2010). In simulation studies, the present method, termed NAM, outperforms the DNP in the majority of cases considered, although both methods generally do well. In small samples, NAM and DNP both outperform the MLE.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11
Fig. 12
Fig. 13
Fig. 14
Fig. 15

Similar content being viewed by others

References

  • Ayer, M., H.D. Brunk, G.M. Ewing, W.T. Reid, and E. Silverman. 1955. An empirical distribution function for sampling with incomplete information. Annals of Mathematical Statistics 26:641–647.

    Article  MathSciNet  MATH  Google Scholar 

  • Barlow, R.E., D.J. Bartholomew, J.M. Bremner, and H.D. Brunk. 1972. Statistical inference under order restrictions: The theory and application of isotonic regression. London: Wiley.

    MATH  Google Scholar 

  • Bhattacharya, R., and M. Kong. 2007. Consistency and asymptotic normality of the estimated effective dose in bioassay. Journal of Statistical Planning and Inference 137:643–658.

    Article  MathSciNet  MATH  Google Scholar 

  • Bhattacharya, R., and L. Lin. 2010. An adaptive nonparametric method in benchmark analysis for bioassay and environmental studies. Statistics & Probability Letters 80:1947–1953.

    Article  MathSciNet  MATH  Google Scholar 

  • Bliss, C.I. 1935. The calculations of dose-mortality curve (with an appendix by Fisher, R.A.). Annals of Applied Biology 22:134–167 (Table IV).

    Article  Google Scholar 

  • Cran, G.W. 1980. AS149 amalgamation of means in the case of simple ordering. Applied Statistics 29(2):209–211.

    Article  MATH  Google Scholar 

  • Dette, H., and R. Scheder. 2010. A finite sample comparison of nonparametric estimates of the effective dose in quantal bioassay. Journal of Statistical Computation and Simulation 80(5):527–544.

    Article  MATH  Google Scholar 

  • Dette, H., N. Neumeyer, and K.F. Pliz. 2005. A note on nonparametric estimation of the effective dose in quantal bioassay. Journal of the American Statistical Association 100:503–510.

    Article  MathSciNet  MATH  Google Scholar 

  • Efron, B., and R.J. Tibshirani. 1993. An introduction to the bootstrap. London: Chapman & Hall.

    MATH  Google Scholar 

  • Eubank, R.L. 1999. Nonparametric regression and spline smoothing (2nd ed.). New York: Marcel Dekker.

    MATH  Google Scholar 

  • Györfi, L., M. Kohler, A. Krzyźak, and H. Walk. 2002. A distribution-free theory of nonparametric regression. New York: Springer.

    Book  MATH  Google Scholar 

  • Hall, P.G. 1992. The bootstrap and Edgeworth expansion. New York: Springer.

    Google Scholar 

  • Joseph, V.R. 2004. Efficient Robbins–Monro procedure for binary data. Biometrika 91:461–470.

    Article  MathSciNet  MATH  Google Scholar 

  • Lee, E.T. 1974. A computer program for linear logistic regression analysis. Computer Programs in Biomedicine 4:80–92.

    Article  Google Scholar 

  • Martin, J.T. 1942. The problem of the evaluation of rotenone-containing plants. VI. The toxicity of l-elliptone and of poisons applied jointly, with further observations on the rotenone equivalent method of assessing the toxicity of derris root. Annals of Applied Biology 30:293–300.

    Article  Google Scholar 

  • Morgan, B.J.T. 1992. Analysis of quantal response data. Monographs on statistics and applied probability (vol. 46). Chapman and Hall/CRC.

  • Müller, H.G., and T. Schmitt. 1988. Kernel and probit estimation in quantal bioassay. Journal of the American Statisttical Association 83(403):750–759.

    Article  MATH  Google Scholar 

  • Nitcheva, D.K., W.W. Piegorsch, and R.W. West. 2007. On use of the multistage dose-response model for assessing laboratory animal carcinogenicity. Regulatory Toxicology and Pharmacology 48:135–147.

    Article  Google Scholar 

  • Park, D., and S. Park. 2006. Parametric and nonparametric estimators of ED 100α . Journal of Statistical Computation and Simulation 76(8):661–672.

    Article  MathSciNet  MATH  Google Scholar 

  • Piegorsch, W.W., and A.J. Bailer. 2005. Analyzing environmental data. New York: Wiley.

    Book  Google Scholar 

  • Rice, J. 1984. Bandwidth choice for nonparametric regression. Annals of Statistics 12:1215–1230.

    Article  MathSciNet  MATH  Google Scholar 

  • Robbins, H., and S. Monroe. 1951. A stochastic approximation method. Annals of Mathematical Statistics 22(3):400–407.

    Article  MathSciNet  MATH  Google Scholar 

  • USEPA. 1997. Exposure factors handbook (Final report). U.S. Environmental Protection Agency, Washington, DC, EPA/600/P-95/002F a-c.

  • Wetherill, G.B., and K.D. Glazebrook. 1986. Sequential methods in statistics. Monographs on statistics and applied probability. London: Chapman and Hall.

    Google Scholar 

Download references

Acknowledgements

The authors are indebted to Professor P.K. Sen for his suggestions, and wish to thank the referee for helpful comments and for pointing out to us the use of the Robbins–Monroe approximation procedure for binary quantal response.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Rabi Bhattacharya.

Additional information

Research supported by NIH grant R21-ES016791 and NSF grant DMS 0806011.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Bhattacharya, R., Lin, L. Nonparametric benchmark analysis in risk assessment: a comparative study by simulation and data analysis. Sankhya B 73, 144–163 (2011). https://doi.org/10.1007/s13571-011-0019-7

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13571-011-0019-7

Keywords

Navigation